-
Notifications
You must be signed in to change notification settings - Fork 2
/
CHANGES
56 lines (56 loc) · 2.46 KB
/
CHANGES
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
netbenchmark_0.97.1
- Documentation files have been added
netbenchmark_0.97.2
- dependencies have been removed
- added the possibility of specify the desired datasets
- added the possibility of specify the type of noise
netbenchmark_0.97.3
- dependency to igraph added
- linking with Rcpp
- changed the evaluation script to evaluate edgelists
- added a function to convert weighted adjacency matrix to an edgelist (Adj2Edgelist.R)
netbenchmark_0.98.0
- dependency to igraph removed
- Computation time of Adj2Edgelist.R reduced
- added a function to compute a friedman statistical test (StatisticalTest.R)
netbenchmark_0.98.1
- State of the art wrappers included and therefore all the dependecies have been added
- Major changes in evaluate.cpp, now it returns the confusion matrix for each prediction
- Changes in comp.metr.R to calculate metrics with the confusion matrix
- Random network perfomance is simulated with Hypergeometric Distribution
netbenchmark_0.98.2
- Statistical test changed
- Fscore measure is deleted
- Measures based in first x predictions (x fixed by the user): precision and aupr_x
netbenchmark_0.98.3
- Wrapper functions returns adjacency matrix
netbenchmark_0.98.4
- Renaming of function to follow the standard naming
- Simplification of the wrapper functions
- Inference algorithms and metanetworks methods are now specified via
list of characters
- Evaluation of symetric matrices only
- Added function to make undirected network from directed one
netbenchmark_0.98.5
- Renaming of some parameters
netbenchmark_0.98.6
- ALL and ALL.fast options
netbenchmark_0.98.7
- Easier integration of new methods via functions=c(“ALL.fast”,”mymeth.wrap”)
netbenchmark_0.98.8
- Spliting of the data and code in two packages
- New data package grndata_0.99.0
netbenchmark_0.99.0
- First version to Bioconductor
netbenchmark_0.99.1
- Using 'message' instead of 'cat'
- Robust loops with seq_len and seq_along
- Removing backticks of anonymous functions
- C++ namespace hygene
- Adding toy examples to allow check and vignette building
netbenchmark_0.99.2
- Giving credit to the Genie3 author
- Adding minimum version of grndata
- Adding verbose option to reduce clutter in vignette output
- Use of R's garbage collector
- Fix to 'message' use