From c3da405a0675197818ccb06b3e070df2d023a1df Mon Sep 17 00:00:00 2001 From: matentzn Date: Wed, 31 Aug 2022 12:18:45 +0000 Subject: [PATCH] Update imports --- pato-base.json | 4 +- pato-base.obo | 4 +- pato-base.owl | 4 +- pato-full.json | 3424 ++++++++++++++++++++++++++++++++++------------ pato-full.obo | 1236 +++++++++++------ pato-full.owl | 2150 +++++++++++++++++++++-------- pato-simple.json | 4 +- pato-simple.obo | 4 +- pato-simple.owl | 558 ++++---- pato.json | 3424 ++++++++++++++++++++++++++++++++++------------ pato.obo | 4 +- pato.owl | 2140 +++++++++++++++++++++-------- 12 files changed, 9506 insertions(+), 3450 deletions(-) diff --git a/pato-base.json b/pato-base.json index 0ca836b..b89f535 100644 --- a/pato-base.json +++ b/pato-base.json @@ -14605,10 +14605,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2022-08-10" + "val": "2022-08-31" } ], - "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-10/pato-base.json" + "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato-base.json" }, "nodes": [ { diff --git a/pato-base.obo b/pato-base.obo index 3717ff9..f6da83f 100644 --- a/pato-base.obo +++ b/pato-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2022-08-10/pato-base.owl +data-version: pato/releases/2022-08-31/pato-base.owl subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And property_value: http://purl.org/dc/elements/1.1/type IAO:8000001 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: IAO:0000700 PATO:0000001 -property_value: owl:versionInfo "2022-08-10" xsd:string +property_value: owl:versionInfo "2022-08-31" xsd:string [Term] id: CL:0000000 diff --git a/pato-base.owl b/pato-base.owl index daa45db..365079d 100644 --- a/pato-base.owl +++ b/pato-base.owl @@ -12,7 +12,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of phenotypic qualities (properties, attributes or characteristics). PATO - the Phenotype And Trait Ontology @@ -20,7 +20,7 @@ quality 1.2 - 2022-08-10 + 2022-08-31 diff --git a/pato-full.json b/pato-full.json index 5098b69..ff8f0aa 100644 --- a/pato-full.json +++ b/pato-full.json @@ -1896,19 +1896,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000670" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#is_inferred", - "val": "true" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/CL_0000048", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "meta": { "basicPropertyValues": [ @@ -14174,27 +14161,6 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/UBERON_0001171" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "MA" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "ZFA" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "cjm" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/UBERON_0002423", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002110" - }, { "meta": { "basicPropertyValues": [ @@ -14804,6 +14770,19 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002202", "sub": "http://purl.obolibrary.org/obo/UBERON_0005989" }, + { + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#source", + "val": "PMID:15890825" + } + ] + }, + "obj": "http://purl.obolibrary.org/obo/UBERON_0000062", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002328" + }, { "meta": { "basicPropertyValues": [ @@ -17658,19 +17637,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002170", "sub": "http://purl.obolibrary.org/obo/UBERON_0010064" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "cjm" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/UBERON_0001173", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0006242" - }, { "meta": { "basicPropertyValues": [ @@ -19508,11 +19474,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0002294" }, - { - "obj": "http://purl.obolibrary.org/obo/BFO_0000040", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002328" - }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "is_a", @@ -24728,6 +24689,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000036194" }, + { + "obj": "http://purl.obolibrary.org/obo/CHEBI_36080", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000045358" + }, { "obj": "http://purl.obolibrary.org/obo/CHEBI_36235", "pred": "http://purl.obolibrary.org/obo/RO_0002233", @@ -28158,6 +28124,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_4023083" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000099", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_4023159" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000100", "pred": "http://purl.obolibrary.org/obo/BFO_0000051", @@ -28523,11 +28494,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002202", "sub": "http://purl.obolibrary.org/obo/CL_0000030" }, - { - "obj": "http://purl.obolibrary.org/obo/CL_0000133", - "pred": "http://purl.obolibrary.org/obo/RO_0002202", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/CL_0000133", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -30313,6 +30279,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_2000032" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000540", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_4023168" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000541", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -31798,11 +31769,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002473", "sub": "http://purl.obolibrary.org/obo/UBERON_0001016" }, - { - "obj": "http://purl.obolibrary.org/obo/CL_0002319", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/CL_0002319", "pred": "is_a", @@ -33518,6 +33484,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000525" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_2000073", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0000569" + }, { "obj": "http://purl.obolibrary.org/obo/CL_3000004", "pred": "is_a", @@ -33550,13 +33521,13 @@ }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003133" + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0000990" }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", "pred": "http://purl.obolibrary.org/obo/RO_0002216", - "sub": "http://purl.obolibrary.org/obo/UBERON_0000990" + "sub": "http://purl.obolibrary.org/obo/UBERON_0003133" }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", @@ -37733,6 +37704,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0003096" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0003014", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0097254" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0003015", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -39123,6 +39099,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0019899" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0005515", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0043559" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0005515", "pred": "is_a", @@ -43983,11 +43964,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002211", "sub": "http://purl.obolibrary.org/obo/GO_0044062" }, - { - "obj": "http://purl.obolibrary.org/obo/GO_0007588", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" - }, { "obj": "http://purl.obolibrary.org/obo/GO_0007588", "pred": "http://purl.obolibrary.org/obo/RO_0002353", @@ -43998,6 +43974,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0030421" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007588", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0097254" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007588", "pred": "is_a", @@ -44028,6 +44009,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0007606" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007600", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0019233" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007600", "pred": "is_a", @@ -44045,19 +44031,24 @@ }, { "obj": "http://purl.obolibrary.org/obo/GO_0007601", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002104" + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/CL_0008028" }, { "obj": "http://purl.obolibrary.org/obo/GO_0007601", "pred": "http://purl.obolibrary.org/obo/RO_0002216", - "sub": "http://purl.obolibrary.org/obo/CL_0008028" + "sub": "http://purl.obolibrary.org/obo/UBERON_0002104" }, { "obj": "http://purl.obolibrary.org/obo/GO_0007605", "pred": "http://purl.obolibrary.org/obo/RO_0002215", "sub": "http://purl.obolibrary.org/obo/UBERON_0016490" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007605", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002105" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007606", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -51148,6 +51139,31 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002213", "sub": "http://purl.obolibrary.org/obo/GO_1904457" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/GO_0062149" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002211", + "sub": "http://purl.obolibrary.org/obo/GO_0051930" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002212", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002213", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0019318", "pred": "is_a", @@ -56378,6 +56394,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051970" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0031645", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0031646", "pred": "is_a", @@ -56388,6 +56409,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051971" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0031646", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0031965", "pred": "http://purl.obolibrary.org/obo/RO_0002234", @@ -65818,6 +65844,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002215", "sub": "http://purl.obolibrary.org/obo/UBERON_0002530" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0046903", + "pred": "http://purl.obolibrary.org/obo/RO_0002215", + "sub": "http://purl.obolibrary.org/obo/UBERON_8450002" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0046903", "pred": "is_a", @@ -70743,6 +70774,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050962" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050906", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0062149" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050907", "pred": "http://purl.obolibrary.org/obo/RO_0002215", @@ -70753,6 +70789,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050912" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050907", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050968" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050909", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -70923,6 +70964,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0007605" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050954", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050975" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050962", "pred": "http://purl.obolibrary.org/obo/RO_0002215", @@ -70933,6 +70979,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050908" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050975", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050994", "pred": "is_a", @@ -74018,6 +74069,21 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051904" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051930", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051930", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051931", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0051930" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0051937", "pred": "is_a", @@ -77488,6 +77554,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/GO_0061102" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0062149", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050968" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0062237", "pred": "is_a", @@ -80088,6 +80159,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002213", "sub": "http://purl.obolibrary.org/obo/GO_1900143" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0097254", + "pred": "http://purl.obolibrary.org/obo/RO_0002215", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0097272", "pred": "is_a", @@ -88818,6 +88894,16 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_88770" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131209", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_2684882" + }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131221", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_131209" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131221", "pred": "is_a", @@ -88898,6 +88984,16 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3312" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_1437180", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3372" + }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_1445966", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3378" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_147537", "pred": "http://purl.obolibrary.org/obo/RO_0002233", @@ -88968,6 +89064,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_33682" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_2684882", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3176" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_2698737", "pred": "is_a", @@ -89503,6 +89604,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_7711" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_3372", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_1445966" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_337687", "pred": "is_a", @@ -102038,6 +102144,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PATO_0015013" }, + { + "obj": "http://purl.obolibrary.org/obo/PATO_0070061", + "pred": "http://purl.obolibrary.org/obo/RO_0000053", + "sub": "http://purl.obolibrary.org/obo/CL_4023159" + }, { "obj": "http://purl.obolibrary.org/obo/PCO_0000000", "pred": "is_a", @@ -102398,6 +102509,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000036194" }, + { + "obj": "http://purl.obolibrary.org/obo/PR_000000001", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000045358" + }, { "obj": "http://purl.obolibrary.org/obo/PR_000001002", "pred": "http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part", @@ -104528,6 +104644,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000001850" }, + { + "obj": "http://purl.obolibrary.org/obo/PR_000045358", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000009054" + }, { "obj": "http://purl.obolibrary.org/obo/PR_000050216", "pred": "is_a", @@ -106118,16 +106239,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002433", "sub": "http://purl.obolibrary.org/obo/UBERON_0001808" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000012", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" - }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000012", - "pred": "http://purl.obolibrary.org/obo/RO_0002433", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000013", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -107913,11 +108024,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002087", "sub": "http://purl.obolibrary.org/obo/UBERON_0000107" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000106", - "pred": "http://purl.obolibrary.org/obo/RO_0002224", - "sub": "http://purl.obolibrary.org/obo/UBERON_0000104" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000107", "pred": "http://purl.obolibrary.org/obo/BFO_0000062", @@ -109333,11 +109439,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0001007" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", "pred": "is_a", @@ -109416,7 +109517,7 @@ { "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_3011048" + "sub": "http://purl.obolibrary.org/obo/UBERON_8450002" }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000468", @@ -112383,11 +112484,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002608", "sub": "http://purl.obolibrary.org/obo/GO_0007610" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0001017", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001017", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -115103,6 +115199,11 @@ "pred": "http://purl.obolibrary.org/obo/uberon/core#channels_from", "sub": "http://purl.obolibrary.org/obo/UBERON_0001529" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001508", + "pred": "http://purl.obolibrary.org/obo/uberon/core#channels_from", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001584" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001514", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -120568,6 +120669,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/UBERON_0001173" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0002294", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002110" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0002294", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -124888,6 +124994,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0005398" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0003942", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_4023168" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0003942", "pred": "http://purl.obolibrary.org/obo/RO_0002385", @@ -125543,11 +125654,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0010371" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0004122", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_3011048" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0004122", "pred": "http://purl.obolibrary.org/obo/RO_0002296", @@ -134098,6 +134204,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0010743" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0034932", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002029" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0034932", "pred": "is_a", @@ -134508,11 +134619,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_3000977" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_3011048", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0004176" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_4000013", "pred": "is_a", @@ -134638,6 +134744,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0002148" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_8450002", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_8480007", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -134963,18 +135074,6 @@ } ] }, - { - "definedClassId": "http://purl.obolibrary.org/obo/CL_0000047", - "genusIds": [ - "http://purl.obolibrary.org/obo/CL_0000048" - ], - "restrictions": [ - { - "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001017", - "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" - } - ] - }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0000048", "genusIds": [ @@ -141583,6 +141682,30 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_4023159", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000099" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/PATO_0070061", + "propertyId": "http://purl.obolibrary.org/obo/RO_0000053" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_4023168", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000540" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0003942", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_4028001", "genusIds": [ @@ -166687,6 +166810,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0050968", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0009593" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0050994", "genusIds": [ @@ -168079,6 +168214,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0051930", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002211" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0051931", "genusIds": [ @@ -172731,6 +172878,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0062149", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0051606" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0062237", "genusIds": [ @@ -184051,6 +184210,30 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_1904057", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002212" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_1904058", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002213" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_1904062", "genusIds": [ @@ -195142,11 +195325,11 @@ { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0001008", "genusIds": [ - "http://purl.obolibrary.org/obo/UBERON_0000467" + "http://purl.obolibrary.org/obo/UBERON_8450002" ], "restrictions": [ { - "fillerId": "http://purl.obolibrary.org/obo/GO_0007588", + "fillerId": "http://purl.obolibrary.org/obo/GO_0097254", "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" } ] @@ -198267,7 +198450,7 @@ "restrictions": [ { "fillerId": "http://purl.obolibrary.org/obo/GO_0000003", - "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" + "propertyId": "http://purl.obolibrary.org/obo/RO_0002216" } ] }, @@ -200731,18 +200914,6 @@ } ] }, - { - "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0003942", - "genusIds": [ - "http://purl.obolibrary.org/obo/UBERON_0001032" - ], - "restrictions": [ - { - "fillerId": "http://purl.obolibrary.org/obo/UBERON_0000012", - "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" - } - ] - }, { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0003952", "genusIds": [ @@ -212415,6 +212586,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/UBERON_8450002", + "genusIds": [ + "http://purl.obolibrary.org/obo/UBERON_0000467" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0046903", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_8470000", "genusIds": [ @@ -212516,10 +212699,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2022-08-10" + "val": "2022-08-31" } ], - "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-10/pato-full.json" + "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato-full.json" }, "nodes": [ { @@ -239562,6 +239745,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000037", "lbl": "hematopoietic stem cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative." ], @@ -239575,6 +239764,9 @@ "http://en.wikipedia.org/wiki/Hematopoietic_stem_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239751,43 +239943,6 @@ }, "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000047", - "lbl": "neuronal stem cell", - "meta": { - "definition": { - "val": "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors.", - "xrefs": [ - "GOC:tfm", - "MESH:D058953", - "PMID:15247488", - "http://en.wikipedia.org/wiki/Neural_stem_cell" - ] - }, - "synonyms": [ - { - "pred": "hasExactSynonym", - "val": "NSC" - }, - { - "pred": "hasExactSynonym", - "val": "neural stem cell" - } - ], - "xrefs": [ - { - "val": "BTO:0002881" - }, - { - "val": "CALOHA:TS-2360" - }, - { - "val": "FMA:86684" - } - ] - }, - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000048", "lbl": "multi fate stem cell", @@ -239828,6 +239983,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000049", "lbl": "common myeloid progenitor", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059)." ], @@ -239839,6 +240000,9 @@ "MESH:D023461" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239906,6 +240070,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000050", "lbl": "megakaryocyte-erythroid progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2." ], @@ -239920,6 +240090,9 @@ "http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239958,6 +240131,10 @@ "lbl": "common lymphoid progenitor", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000044" @@ -239976,6 +240153,9 @@ "PMID:16551251" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240111,6 +240291,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000057", "lbl": "fibroblast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative." ], @@ -240122,6 +240308,9 @@ "http://en.wikipedia.org/wiki/Fibroblast" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000452" @@ -240193,6 +240382,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000066", "lbl": "epithelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.", "xrefs": [ @@ -240201,6 +240396,9 @@ "MESH:D004847" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240265,12 +240463,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000071", "lbl": "blood vessel endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that lines the vasculature.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240284,13 +240491,22 @@ "id": "http://purl.obolibrary.org/obo/CL_0000075", "lbl": "columnar/cuboidal epithelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.", "xrefs": [ "GO:0002065", "https://orcid.org/0000-0001-5208-3432" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -240310,6 +240526,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000077", "lbl": "mesothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A flattened epithelial cell of mesenchymal origin that lines the serous cavity.", "xrefs": [ @@ -240317,6 +240539,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240423,6 +240648,10 @@ "lbl": "T cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000804" @@ -240440,6 +240669,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240486,6 +240718,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000092", "lbl": "osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid." ], @@ -240501,6 +240739,9 @@ "PMID:17380158" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -240528,6 +240769,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000094", "lbl": "granulocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A leukocyte with abundant granules in the cytoplasm.", "xrefs": [ @@ -240537,6 +240784,9 @@ "http://en.wikipedia.org/wiki/Granulocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240601,6 +240851,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000099", "lbl": "interneuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.", "xrefs": [ @@ -240608,6 +240864,9 @@ "MESH:D007395" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003811" @@ -240804,6 +241063,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000115", "lbl": "endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]." ], @@ -240817,6 +241082,9 @@ "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241105,6 +241373,10 @@ "lbl": "fat cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000450" @@ -241116,6 +241388,9 @@ "MESH:D017667" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241227,6 +241502,10 @@ "lbl": "melanocyte", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000572" @@ -241238,6 +241517,9 @@ "SANBI:mhl" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasNarrowSynonym", @@ -241302,6 +241584,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000151", "lbl": "secretory cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell that specializes in controlled release of one or more substances.", "xrefs": [ @@ -241309,6 +241597,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003659" @@ -241379,6 +241670,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000158", "lbl": "club cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium.", "xrefs": [ @@ -241389,6 +241686,9 @@ "PMID:7905712" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241467,12 +241767,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000165", "lbl": "neuroendocrine cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals.", "xrefs": [ "MESH:D055099" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241506,6 +241815,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000169", "lbl": "type B pancreatic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression." ], @@ -241517,6 +241832,9 @@ "http://en.wikipedia.org/wiki/Pancreatic_b_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241634,6 +241952,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000171", "lbl": "pancreatic A cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.", "xrefs": [ @@ -241641,6 +241965,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241669,6 +241996,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000173", "lbl": "pancreatic D cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.", "xrefs": [ @@ -241676,6 +242009,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241717,6 +242053,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000182", "lbl": "hepatocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive." ], @@ -241730,6 +242072,9 @@ "http://en.wikipedia.org/wiki/Hepatocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000575" @@ -241804,12 +242149,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000188", "lbl": "cell of skeletal muscle", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A somatic cell located in skeletal muscle.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241835,6 +242189,10 @@ "lbl": "smooth muscle cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000191" @@ -241848,6 +242206,9 @@ "http://en.wikipedia.org/wiki/Smooth_muscle_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -242238,6 +242599,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000232", "lbl": "erythrocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.", "xrefs": [ @@ -242245,6 +242612,9 @@ "MESH:D004912" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242298,6 +242668,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000235", "lbl": "macrophage", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid." ], @@ -242311,6 +242687,9 @@ "PMID:1919437" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242337,16 +242716,41 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0000240", + "lbl": "stratified squamous epithelial cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0000242", "lbl": "Merkel cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber.", "xrefs": [ "MESH:D018862" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242373,6 +242777,22 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0000287", + "lbl": "eye photoreceptor cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0000293", "lbl": "structural cell", @@ -242475,6 +242895,10 @@ "lbl": "keratinocyte", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002185" @@ -242494,6 +242918,9 @@ "http://en.wikipedia.org/wiki/Keratinocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242522,6 +242949,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000313", "lbl": "serous secreting cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.", "xrefs": [ @@ -242530,6 +242963,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242768,6 +243204,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000359", "lbl": "vascular associated smooth muscle cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A smooth muscle cell associated with the vasculature.", "xrefs": [ @@ -242775,6 +243217,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242954,6 +243399,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000451", "lbl": "dendritic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative).", "xrefs": [ @@ -242961,6 +243412,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -243171,12 +243625,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000509", "lbl": "gastrin secreting cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A peptide hormone secreting cell that secretes gastrin.", "xrefs": [ "GO:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -243275,6 +243738,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000525", "lbl": "syncytiotrophoblast cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy.", "xrefs": [ @@ -243282,6 +243751,9 @@ "ISBN:0323052908" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243308,6 +243780,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000526", "lbl": "afferent neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A neuron which conveys sensory information centrally from the periphery.", "xrefs": [ @@ -243315,6 +243793,9 @@ "MESH:D009475" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243352,6 +243833,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000540", "lbl": "neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma." ], @@ -243362,6 +243849,9 @@ "http://en.wikipedia.org/wiki/Neuron" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243420,6 +243910,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000542", "lbl": "lymphocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)" ], @@ -243431,6 +243927,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000775" @@ -243661,6 +244160,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000553", "lbl": "megakaryocyte progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative." ], @@ -243672,6 +244177,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243748,6 +244256,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000556", "lbl": "megakaryocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Megakaryocytes are reportedly CD181-positive and CD182-positive." ], @@ -243759,6 +244273,9 @@ "http://en.wikipedia.org/wiki/Megakaryocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243898,6 +244415,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000559", "lbl": "promonocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid." ], @@ -243908,6 +244431,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004657" @@ -244024,12 +244550,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000573", "lbl": "retinal cone cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.", "xrefs": [ "MESH:D017949" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001036" @@ -244049,6 +244584,10 @@ "lbl": "corneal epithelial cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:1000431" @@ -244060,6 +244599,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244087,6 +244629,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000576", "lbl": "monocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid." ], @@ -244097,6 +244645,9 @@ "MESH:D009000" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000876" @@ -244221,12 +244772,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000604", "lbl": "retinal rod cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.", "xrefs": [ "MESH:D017948" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001024" @@ -244302,6 +244862,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000646", "lbl": "basal cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament.", "xrefs": [ @@ -244309,6 +244875,9 @@ "ISBN:0517223651" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000939" @@ -244602,12 +245171,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000740", "lbl": "retinal ganglion cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.", "xrefs": [ "GOC:dph" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244641,6 +245219,10 @@ "lbl": "cardiac muscle cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "FMA:83808" @@ -244659,6 +245241,9 @@ "PMID:4711263" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -244705,12 +245290,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000748", "lbl": "retinal bipolar neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.", "xrefs": [ "PMID:14689473" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -244718,12 +245312,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000763", "lbl": "myeloid cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.", "xrefs": [ "GOC:add" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001441" @@ -244743,6 +245346,10 @@ "lbl": "erythroid lineage cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002156" @@ -244758,6 +245365,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244830,6 +245440,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000775", "lbl": "neutrophil", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.", "xrefs": [ @@ -244839,6 +245455,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -244946,6 +245565,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000778", "lbl": "mononuclear osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: mononuclear, highly vesicular." ], @@ -244959,7 +245584,10 @@ "PMID:17380158", "PMID:9415452" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -244967,6 +245595,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000779", "lbl": "multinuclear osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: multinucleated, highly vesicular." ], @@ -244978,6 +245612,9 @@ "PMID:9415452" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -245114,6 +245751,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000836", "lbl": "promyelocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative.", "xrefs": [ @@ -245124,6 +245767,9 @@ "http://www.cap.org" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "CALOHA:TS-0825" @@ -245139,6 +245785,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000837", "lbl": "hematopoietic multipotent progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Markers differ between mouse and human." ], @@ -245150,6 +245802,9 @@ "PMID:19022770" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -245394,6 +246049,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000990", "lbl": "conventional dendritic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive." ], @@ -245405,6 +246066,9 @@ "PMID:17850486" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -245724,8 +246388,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "adiehl" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -245746,6 +246410,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0001054", "lbl": "CD14-positive monocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes." ], @@ -245756,6 +246426,9 @@ "PMID:22343568" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasNarrowSynonym", @@ -245852,8 +246525,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -245876,11 +246549,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T18:53:32Z" } ], @@ -245909,11 +246582,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T19:16:26Z" } ], @@ -245952,11 +246625,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T19:39:12Z" } ], @@ -246036,8 +246709,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246071,8 +246744,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246099,8 +246772,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246127,8 +246800,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246156,8 +246829,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246186,8 +246859,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246214,8 +246887,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246242,8 +246915,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246273,8 +246946,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246301,8 +246974,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246329,8 +247002,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246357,8 +247030,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246381,8 +247054,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246409,8 +247082,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246447,8 +247120,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246485,8 +247158,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246512,8 +247185,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246545,8 +247218,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246573,8 +247246,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246590,6 +247267,9 @@ "http://www.copewithcytokines.de/cope.cgi?key=pancreatic%20acinar%20cells" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -246616,8 +247296,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246645,8 +247325,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246692,8 +247372,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246745,8 +247425,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246774,8 +247454,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246803,8 +247483,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246832,8 +247512,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246861,8 +247541,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246896,8 +247576,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246912,6 +247596,9 @@ "PMID:14740223" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:63099" @@ -246926,8 +247613,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246943,6 +247634,9 @@ "PMID:8185160" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -246967,8 +247661,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246996,8 +247690,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247030,8 +247724,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247079,8 +247773,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247117,8 +247811,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247132,6 +247830,9 @@ "ISBN:068340007X" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -247152,8 +247853,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247189,8 +247890,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247238,8 +247939,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247252,6 +247957,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004956" @@ -247272,8 +247980,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247287,6 +247999,9 @@ "ISBN:0517223651" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:70542" @@ -247301,8 +248016,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247333,8 +248048,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247361,8 +248076,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247385,8 +248100,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247417,8 +248132,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247449,8 +248164,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247482,8 +248197,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247515,8 +248230,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247543,8 +248258,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247571,8 +248286,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247614,8 +248329,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247646,8 +248361,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247681,8 +248396,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247710,8 +248425,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247726,6 +248445,9 @@ "http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67559" @@ -247740,8 +248462,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247768,8 +248490,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247796,8 +248518,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247836,8 +248558,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247876,8 +248598,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247900,8 +248622,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247932,8 +248654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247973,8 +248695,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248005,8 +248727,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248021,6 +248747,9 @@ "Wiki:Decidualization&oldid=908981933#Endometrial_stromal_cells_(ESCs)" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248044,8 +248773,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248077,8 +248806,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248096,6 +248829,9 @@ "ISBN:0618947256" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:63134" @@ -248110,8 +248846,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248138,8 +248874,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248180,8 +248916,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248222,8 +248958,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248264,8 +249000,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248281,6 +249021,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248315,8 +249058,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248349,8 +249092,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248381,8 +249124,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248420,8 +249163,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248457,8 +249200,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248485,8 +249228,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248499,7 +249246,10 @@ "GOC:tfm", "PMID:18757316" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -248509,8 +249259,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248533,8 +249283,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248557,8 +249307,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248603,8 +249353,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248639,8 +249389,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248663,8 +249413,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248687,8 +249437,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248702,6 +249456,9 @@ "ISBN:978-0-7020-2958-5" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248721,8 +249478,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248755,8 +249512,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248793,8 +249550,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248838,8 +249595,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248867,8 +249624,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248903,8 +249660,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248929,8 +249686,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248963,11 +249720,11 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-1773-2692" + "val": "https://orcid.org/0000-0002-1773-2692" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249033,8 +249790,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249067,8 +249824,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249091,8 +249848,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249116,8 +249873,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249143,8 +249900,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249167,8 +249924,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249213,8 +249970,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249244,8 +250001,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249273,8 +250030,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249287,6 +250048,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -249302,8 +250066,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249335,8 +250099,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249363,8 +250127,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249386,8 +250150,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249409,8 +250173,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249427,6 +250195,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -249454,8 +250225,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249480,8 +250251,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249503,8 +250274,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249532,8 +250303,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249549,8 +250320,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249580,8 +250351,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249603,8 +250374,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249626,8 +250397,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249655,8 +250426,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249678,8 +250449,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249692,6 +250467,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001220" @@ -249712,8 +250490,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249725,7 +250507,10 @@ "xrefs": [ "GOC:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -249735,8 +250520,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249758,8 +250543,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249771,7 +250560,10 @@ "xrefs": [ "GOC:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -249781,8 +250573,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249804,8 +250596,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249827,8 +250619,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249841,6 +250637,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003336" @@ -249855,8 +250654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249878,8 +250677,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249901,14 +250700,21 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2011-03-06T05:46:39Z" } ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004402" @@ -249923,8 +250729,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249946,8 +250752,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249969,8 +250775,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249992,8 +250798,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250015,8 +250821,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250038,8 +250844,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250052,6 +250862,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001255" @@ -250069,8 +250882,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250086,8 +250899,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250109,8 +250922,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250132,8 +250945,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250160,8 +250973,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250188,8 +251001,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250216,8 +251029,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250247,8 +251060,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250275,8 +251088,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250319,8 +251132,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250344,8 +251157,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250368,8 +251181,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250392,8 +251205,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250487,8 +251300,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250522,8 +251335,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250545,8 +251358,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250709,12 +251522,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0008024", "lbl": "pancreatic endocrine cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endocrine cell that is part of the pancreas.", "xrefs": [ "GOC:dos" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -250724,8 +251546,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250757,8 +251579,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250772,7 +251598,8 @@ ] }, "subsets": [ - "http://purl.obolibrary.org/obo/cl#added_for_HCA" + "http://purl.obolibrary.org/obo/cl#added_for_HCA", + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ] }, "type": "CLASS" @@ -250783,8 +251610,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250856,8 +251683,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -250884,8 +251711,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -250898,7 +251729,8 @@ ] }, "subsets": [ - 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"pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251010,8 +251842,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -251041,8 +251873,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251069,8 +251901,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251097,8 +251929,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -251149,8 +251981,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -251180,8 +252012,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -251205,8 +252037,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251233,8 +252065,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251255,8 +252087,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -251283,8 +252115,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -251314,12 +252146,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2021-11-30T16:13:30Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2021-11-30T16:13:30Z" } ], "definition": { @@ -251352,12 +252184,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2021-12-13T13:53:01Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2021-12-13T13:53:01Z" } ], "definition": { @@ -251390,12 +252222,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2021-12-13T13:56:42Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2021-12-13T13:56:42Z" } ], "definition": { @@ -251428,12 +252260,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2021-12-13T14:01:05Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2021-12-13T14:01:05Z" } ], "definition": { @@ -251467,12 +252299,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2021-12-13T14:39:25Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2021-12-13T14:39:25Z" } ], "definition": { @@ -251505,12 +252337,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2022-02-21T15:39:10Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2022-02-21T15:39:10Z" } ], "definition": { @@ -251530,12 +252362,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2022-03-17T12:00:44Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2022-03-17T12:00:44Z" } ], "definition": { @@ -251561,8 +252393,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "GOC:cjm" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-6601-2165" } ], "definition": { @@ -251583,8 +252415,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "GOC:cjm" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-6601-2165" } ], "definition": { @@ -251599,6 +252431,22 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0010008", + "lbl": "cardiac endothelial cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010009", "lbl": "camera-type eye photoreceptor cell", @@ -251618,8 +252466,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", @@ -251774,8 +252622,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251790,8 +252638,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251806,8 +252654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251822,8 +252670,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251842,8 +252690,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251868,8 +252716,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251946,8 +252794,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tberardini" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-3837-8864" } ], "definition": { @@ -251968,8 +252816,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -251991,8 +252839,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252020,8 +252868,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252043,8 +252891,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252066,8 +252914,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252089,8 +252937,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252112,11 +252960,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-05-07T16:03:27Z" } ], @@ -252141,11 +252989,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-05-07T17:29:51Z" } ], @@ -252153,7 +253005,8 @@ "val": "Any chondrocyte that is part of the tracheobronchial tree." }, "subsets": [ - "http://purl.obolibrary.org/obo/cl#added_for_HCA" + "http://purl.obolibrary.org/obo/cl#added_for_HCA", + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms": [ { @@ -252170,11 +253023,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-07-21T12:42:48Z" } ], @@ -252184,6 +253041,9 @@ "PMID:9108778" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252199,11 +253059,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-07-21T12:50:22Z" } ], @@ -252213,6 +253077,9 @@ "PMID:10853867" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252228,11 +253095,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-03T12:24:24Z" } ], @@ -252260,11 +253127,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-09T13:56:47Z" } ], @@ -252304,11 +253171,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-10T12:38:29Z" } ], @@ -252342,6 +253209,38 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_1000223", + "lbl": "lung neuroendocrine cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_1000271", + "lbl": "lung ciliated cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_1000274", "lbl": "trophectodermal cell", @@ -252413,12 +253312,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000279", "lbl": "smooth muscle cell of large intestine", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A smooth muscle cell that is part of the large intestine.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252606,12 +253514,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000309", "lbl": "epicardial adipocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A fat cell that is part of the epicardial fat.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252834,6 +253751,12 @@ "id": "http://purl.obolibrary.org/obo/CL_1000398", "lbl": "endothelial cell of hepatic sinusoid", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates.", "xrefs": [ @@ -252841,6 +253764,9 @@ "PMID:3926620" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252995,12 +253921,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000412", "lbl": "endothelial cell of arteriole", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the arteriole.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67760" @@ -253017,6 +253952,10 @@ "lbl": "endothelial cell of artery", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002542" @@ -253028,6 +253967,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253052,12 +253994,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000414", "lbl": "endothelial cell of venule", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the venule.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67762" @@ -253068,7 +254019,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_1000415", - "lbl": "epithelial cell of gall bladder", + "lbl": "epithelial cell of gallbladder", "meta": { "definition": { "val": "An epithelial cell that is part of the gallbladder.", @@ -253205,12 +254156,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000457", "lbl": "mesothelial cell of visceral peritoneum", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A mesothelial cell that is part of the visceral peritoneum.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:72143" @@ -253223,12 +254183,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000458", "lbl": "melanocyte of skin", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A melanocyte that is part of the skin of body.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253411,12 +254380,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000493", "lbl": "mesothelial cell of visceral pleura", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A mesothelial cell that is part of the visceral pleura.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:86739" @@ -253429,12 +254407,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1001433", "lbl": "epithelial cell of exocrine pancreas", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An epithelial cell of the exocrine pancreas.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253483,6 +254470,15 @@ "id": "http://purl.obolibrary.org/obo/CL_1001568", "lbl": "pulmonary artery endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -253723,25 +254719,25 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_1001592", - "lbl": "gall bladder glandular cell", + "lbl": "gallbladder glandular cell", "meta": { "definition": { - "val": "Glandular cell of gall bladder epithelium.", + "val": "Glandular cell of gallbladder epithelium.", "xrefs": [ "NPX:PDR" ] }, "synonyms": [ { - "pred": "hasRelatedSynonym", - "val": "gall bladder glandular cells", + "pred": "hasExactSynonym", + "val": "gall bladder glandular cell", "xrefs": [ - "CALOHA:TS-1278" + "FMA:7202" ] }, { "pred": "hasRelatedSynonym", - "val": "gallbladder glandular cell", + "val": "gall bladder glandular cells", "xrefs": [ "CALOHA:TS-1278" ] @@ -253845,6 +254841,12 @@ "id": "http://purl.obolibrary.org/obo/CL_1001599", "lbl": "pancreas exocrine glandular cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.", "xrefs": [ @@ -253852,6 +254854,9 @@ "NPX:PDR" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -253999,8 +255004,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254025,8 +255030,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254048,8 +255053,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254071,8 +255076,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254084,7 +255093,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254094,8 +255106,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254117,8 +255129,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254140,8 +255152,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254163,8 +255175,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254191,8 +255203,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254214,8 +255226,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254237,8 +255249,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254260,8 +255272,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254283,8 +255295,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254326,8 +255338,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254349,8 +255361,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254372,8 +255384,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254395,8 +255407,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254418,8 +255430,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254441,8 +255453,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254457,7 +255473,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254467,8 +255486,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254499,8 +255518,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254550,8 +255569,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254576,8 +255595,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254592,7 +255615,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254602,8 +255628,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254628,8 +255654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254654,8 +255680,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254670,7 +255700,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254680,8 +255713,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254696,7 +255733,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254706,8 +255746,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254732,8 +255772,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254758,8 +255798,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254784,8 +255824,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254810,8 +255850,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254823,7 +255863,16 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "cardiac neural crest cell", + "xrefs": [ + "PMID:33060096" + ] + } + ] }, "type": "CLASS" }, @@ -254833,8 +255882,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254859,8 +255908,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254888,8 +255937,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254911,8 +255960,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254924,7 +255977,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254934,8 +255990,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254957,8 +256013,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "CellBLAST" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q97529981" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254981,8 +256037,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "CellBLAST" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q97529981" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -255005,8 +256061,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255038,8 +256094,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255071,8 +256127,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255104,8 +256160,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255132,8 +256188,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255154,8 +256210,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255181,8 +256237,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255218,8 +256274,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255240,8 +256296,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255262,8 +256318,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255284,8 +256340,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255306,8 +256362,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255326,7 +256382,7 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0001-7258-9596" + "val": "https://orcid.org/0000-0001-7258-9596" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", @@ -255342,14 +256398,52 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_4023159", + "lbl": "double bouquet cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "http://orcid.org/0000-0001-7258-9596" + } + ], + "definition": { + "val": "An interneuron that has double bouquet morphology.", + "xrefs": [ + "PMID:15378039" + ] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_4023168", + "lbl": "somatosensory neuron", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "http://orcid.org/0000-0001-7258-9596" + } + ], + "definition": { + "val": "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.", + "xrefs": [ + "PMID:22865660" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_4028001", "lbl": "pulmonary capillary endothelial cell", "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-3293-5463" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-3293-5463" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -255375,7 +256469,7 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-1773-2692" + "val": "https://orcid.org/0000-0002-1773-2692" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -293058,6 +294152,40 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0019233", + "lbl": "sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.", + "xrefs": [ + "GOC:curators" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "nociception" + }, + { + "pred": "hasNarrowSynonym", + "val": "perception of physiological pain" + } + ], + "xrefs": [ + { + "val": "Wikipedia:Nociception" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0019318", "lbl": "hexose metabolic process", @@ -338952,6 +340080,96 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0050968", + "lbl": "detection of chemical stimulus involved in sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal.", + "xrefs": [ + "GOC:ai" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "perception of pain, detection of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "perception of pain, sensory detection of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "perception of pain, sensory transduction of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "sensory detection of chemical stimulus during perception of pain" + }, + { + "pred": "hasExactSynonym", + "val": "sensory transduction of chemical stimulus during perception of pain" + }, + { + "pred": "hasRelatedSynonym", + "val": "chemical nociception", + "xrefs": [ + "GOC:pr" + ] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/GO_0050975", + "lbl": "sensory perception of touch", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).", + "xrefs": [ + "GOC:ai" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "perception of touch" + }, + { + "pred": "hasExactSynonym", + "val": "tactile sense" + }, + { + "pred": "hasExactSynonym", + "val": "taction" + }, + { + "pred": "hasExactSynonym", + "val": "tactition" + } + ], + "xrefs": [ + { + "val": "Wikipedia:Touch" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0050994", "lbl": "regulation of lipid catabolic process", @@ -343797,6 +345015,25 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0051930", + "lbl": "regulation of sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal.", + "xrefs": [ + "GOC:ai" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0051931", "lbl": "regulation of sensory perception", @@ -355891,6 +357128,33 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0062149", + "lbl": "detection of stimulus involved in sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "dph" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2019-09-13T13:48:47Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal.", + "xrefs": [ + "PMID:19837031" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0062237", "lbl": "protein localization to postsynapse", @@ -365051,6 +366315,39 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0097254", + "lbl": "renal tubular secretion", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000233", + "val": "https://github.com/geneontology/go-ontology/issues/22368" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "pr" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2012-03-05T02:03:58Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs.", + "xrefs": [ + "GOC:rph", + "PMID:25287933", + "Wikipedia:Renal_secretion#Secretion" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0097272", "lbl": "ammonium homeostasis", @@ -404565,6 +405862,264 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_1904057", + "lbl": "negative regulation of sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "sl" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2015-03-18T20:33:57Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain.", + "xrefs": [ + "GOC:TermGenie", + "GO_REF:0000058", + "PMID:17167094" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "down regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down-regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down-regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "downregulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "downregulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "negative regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "down regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "down-regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "downregulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "negative regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/GO_1904058", + "lbl": "positive regulation of sensory perception of pain", 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"up regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "up-regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "upregulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_1904062", "lbl": "regulation of cation transmembrane transport", @@ -437562,6 +439117,55 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_131209", + "lbl": "Zygnemophyceae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_class" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#common_name", + "val": "gamophytes" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Conjugatophyceae" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gamophyceae" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gamophyta" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Zygnematophyceae" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_131221", "lbl": "Streptophytina", @@ -437785,6 +439389,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_1445966", + "lbl": "Gnetidae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_subclass" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_147537", "lbl": "Saccharomycotina", @@ -438388,6 +440014,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_2684882", + "lbl": "Zygnematophycidae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_subclass" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_2698737", "lbl": "Sar", @@ -438554,6 +440202,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3176", + "lbl": "Zygnematales", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_order" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_3193", "lbl": "Embryophyta", @@ -439104,6 +440774,40 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3372", + "lbl": "Gnetopsida", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_class" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "synonyms": [ + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Chlamydospermopsida" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gneticae" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_337687", "lbl": "Muroidea", @@ -439132,6 +440836,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3378", + "lbl": "Gnetales", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_order" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_3398", "lbl": "Magnoliopsida", @@ -512362,6 +514088,45 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/PR_000009054", + "lbl": "insulin gene translation product", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "protein" + } + ], + "comments": [ + "Category=gene." + ], + "definition": { + "val": "An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof.", + "xrefs": [ + "PRO:DNx" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/pr#PRO-short-label", + "val": "INS", + "xrefs": [ + "PRO:DNx" + ] + }, + { + "pred": "hasBroadSynonym", + "val": "insulin", + "xrefs": [ + "PRO:DAN" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/PR_000009127", "lbl": "integrin alpha-IIb", @@ -513055,6 +514820,38 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/PR_000045358", + "lbl": "insulin family protein", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "protein" + } + ], + "comments": [ + "Category=family." + ], + "definition": { + "val": "A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide.", + "xrefs": [ + "PRO:DAN" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/pr#PRO-short-label", + "val": "fam:INS", + "xrefs": [ + "PRO:DAN" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/PR_000050216", "lbl": "receptor-type tyrosine-protein phosphatase C isoform CD45R", @@ -541144,6 +542941,10 @@ "pred": "http://purl.obolibrary.org/obo/UBPROP_0000202", "val": "http://purl.obolibrary.org/obo/FMA_75572" }, + { + "pred": "http://purl.org/dc/terms/date", + "val": "2022-06-10T18:22:34Z" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "uberon" @@ -541168,7 +542969,7 @@ ], "synonyms": [ { - "pred": "hasRelatedSynonym", + "pred": "hasNarrowSynonym", "synonymType": "http://purl.obolibrary.org/obo/uberon/core#PLURAL", "val": "genitalia" }, @@ -541181,7 +542982,7 @@ ] }, { - "pred": "hasRelatedSynonym", + "pred": "hasNarrowSynonym", "val": "genital system" }, { @@ -542510,7 +544311,7 @@ } ], "definition": { - "val": "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products..", + "val": "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.", "xrefs": [ "DOI:10.1371/journal.pone.0099864", "GO:0072001" @@ -542524,7 +544325,7 @@ ], "synonyms": [ { - "pred": "hasExactSynonym", + "pred": "hasBroadSynonym", "val": "excretory system" }, { @@ -542539,13 +544340,6 @@ "pred": "hasRelatedSynonym", "val": "renal/urinary system" }, - { - "pred": "hasExactSynonym", - "val": "renal system", - "xrefs": [ - "GO:0001977" - ] - }, { "pred": "hasExactSynonym", "val": "systema urinaria", @@ -552318,7 +554112,7 @@ } ], "definition": { - "val": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO].", + "val": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO].", "xrefs": [ "GO:0031016" ] @@ -573684,10 +575478,6 @@ "lbl": "visual system", "meta": { "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/RO_0002171", - "val": "http://purl.obolibrary.org/obo/UBERON_0002105" - }, { "pred": "http://purl.obolibrary.org/obo/UBPROP_0000001", "val": "The sensory system used for sight.[AAO]" @@ -574301,7 +576091,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0002110", - "lbl": "gall bladder", + "lbl": "gallbladder", "meta": { "basicPropertyValues": [ { @@ -574384,9 +576174,9 @@ }, { "pred": "hasExactSynonym", - "val": "gallbladder", + "val": "cholecyst", "xrefs": [ - "FMA:7202" + "WikipediaVersioned:Gallbladder&oldid=1092217922" ] } ], @@ -607843,7 +609633,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0003942", - "lbl": "somatic sensory system", + "lbl": "somatosensory system", "meta": { "basicPropertyValues": [ { @@ -607880,13 +609670,6 @@ { "pred": "hasExactSynonym", "val": "system for detection of somatic senses" - }, - { - "pred": "hasExactSynonym", - "val": "somatosensory system", - "xrefs": [ - "NLXANAT:090818" - ] } ], "xrefs": [ @@ -612091,7 +613874,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004240", - "lbl": "gall bladder smooth muscle", + "lbl": "gallbladder smooth muscle", "meta": { "basicPropertyValues": [ { @@ -612108,49 +613891,46 @@ "synonyms": [ { "pred": "hasExactSynonym", - "val": "gall bladder involuntary muscle", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gallbladder smooth muscle tissue" }, { "pred": "hasExactSynonym", - "val": "gall bladder non-striated muscle", + "val": "gall bladder involuntary muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gall bladder smooth muscle tissue", + "val": "gall bladder non-striated muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder involuntary muscle", + "val": "gall bladder smooth muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder non-striated muscle", + "val": "gall bladder smooth muscle tissue", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder smooth muscle", + "val": "gallbladder involuntary muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder smooth muscle tissue", + "val": "gallbladder non-striated muscle", "xrefs": [ "OBOL:automatic" ] @@ -619012,7 +620792,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004781", - "lbl": "gall bladder lamina propria", + "lbl": "gallbladder lamina propria", "meta": { "basicPropertyValues": [ { @@ -619029,21 +620809,18 @@ "synonyms": [ { "pred": "hasExactSynonym", - "val": "gall bladder lamina propria mucosa", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gallbladder lamina propria mucosa" }, { "pred": "hasExactSynonym", - "val": "gallbladder lamina propria", + "val": "gall bladder lamina propria", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder lamina propria mucosa", + "val": "gall bladder lamina propria mucosa", "xrefs": [ "OBOL:automatic" ] @@ -619184,7 +620961,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004783", - "lbl": "gall bladder serosa", + "lbl": "gallbladder serosa", "meta": { "basicPropertyValues": [ { @@ -619210,14 +620987,11 @@ }, { "pred": "hasExactSynonym", - "val": "gall bladder serous membrane", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gall bladder serous membrane" }, { "pred": "hasExactSynonym", - "val": "gallbladder serosa", + "val": "gall bladder serosa", "xrefs": [ "OBOL:automatic" ] @@ -635242,7 +637016,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0006242", - "lbl": "gall bladder primordium", + "lbl": "gallbladder primordium", "meta": { "basicPropertyValues": [ { @@ -635260,6 +637034,12 @@ "subsets": [ "http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2" ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "gall bladder primordium" + } + ], "xrefs": [ { "val": "EHDAA2:0000700" @@ -670168,40 +671948,6 @@ }, "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/UBERON_3011048", - "lbl": "genital system", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/UBPROP_0000004", - "val": "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val": "uberon" - } - ], - "definition": { - "val": "Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs.", - "xrefs": [ - "XAO:0000142", - "https://www.merriam-webster.com/dictionary/genitalia" - ] - }, - "synonyms": [ - { - "pred": "hasBroadSynonym", - "val": "genitalia" - }, - { - "pred": "hasBroadSynonym", - "val": "reproductive system" - } - ] - }, - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/UBERON_4000013", "lbl": "mineralized skeletal tissue", @@ -671124,6 +672870,33 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/UBERON_8450002", + "lbl": "excretory system", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-6095-8718" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2022-05-25T18:21:29Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "uberon" + } + ], + "definition": { + "val": "An anatomical system that eliminates waste products that arise as a result of metabolic activity.", + "xrefs": [ + "GO:0007588" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/UBERON_8470000", "lbl": "placental blood", @@ -672260,21 +674033,11 @@ "lbl": "keratinizing barrier epithelial cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000240", - "lbl": "stratified squamous epithelial cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000257", "lbl": "Eumycetozoan cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000287", - "lbl": "eye photoreceptor cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000311", "lbl": "keratin accumulating cell", @@ -672355,11 +674118,6 @@ "lbl": "His-Purkinje system cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0010008", - "lbl": "cardiac endothelial cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0010020", "lbl": "cardiac glial cell", @@ -672380,16 +674138,6 @@ "lbl": "stomach neuroendocrine cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_1000223", - "lbl": "lung neuroendocrine cell", - "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/CL_1000271", - "lbl": "lung ciliated cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_1000272", "lbl": "lung secretory cell", diff --git a/pato-full.obo b/pato-full.obo index 7c34d76..4b28a80 100644 --- a/pato-full.obo +++ b/pato-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2022-08-10/pato-full.owl +data-version: pato/releases/2022-08-31/pato-full.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -58,13 +58,37 @@ subsetdef: unverified_taxonomic_grouping "" subsetdef: upper_level "" subsetdef: value_slim "Value slim" subsetdef: vertebrate_core "" +synonymtypedef: ABBREVIATION "" +synonymtypedef: abbreviation "" +synonymtypedef: blast_name "" +synonymtypedef: common_name "" +synonymtypedef: DEPRECATED "" +synonymtypedef: DUBIOUS "" +synonymtypedef: equivalent_name "" +synonymtypedef: genbank_common_name "" +synonymtypedef: Gene-based "" +synonymtypedef: HUMAN_PREFERRED "" +synonymtypedef: in_part "" +synonymtypedef: INCONSISTENT "" +synonymtypedef: INN "" +synonymtypedef: IUPAC_NAME "" +synonymtypedef: LATIN "" +synonymtypedef: MISSPELLING "" +synonymtypedef: PENDING_REVIEW "" +synonymtypedef: PLURAL "" +synonymtypedef: PRO-short-label "" +synonymtypedef: scientific_name "" +synonymtypedef: SENSU "" +synonymtypedef: syngo_official_label "" +synonymtypedef: synonym "" +synonymtypedef: systematic_synonym "" default-namespace: quality ontology: pato/pato-full property_value: http://purl.org/dc/elements/1.1/description "An ontology of phenotypic qualities (properties, attributes or characteristics)." xsd:string property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And Trait Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: IAO:0000700 PATO:0000001 -property_value: owl:versionInfo "2022-08-10" xsd:string +property_value: owl:versionInfo "2022-08-31" xsd:string [Term] id: BFO:0000002 @@ -7359,6 +7383,7 @@ id: CL:0000037 name: hematopoietic stem cell def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Hematopoietic_stem_cell, PMID:19022770] comment: Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative. +subset: human_reference_atlas synonym: "blood forming stem cell" EXACT [] synonym: "colony forming unit hematopoietic" RELATED [] synonym: "hemopoietic stem cell" EXACT [] @@ -7401,6 +7426,7 @@ relationship: lacks_plasma_membrane_part PR:000001839 ! T-cell surface glycoprot relationship: lacks_plasma_membrane_part PR:000001889 ! CD14 molecule relationship: lacks_plasma_membrane_part PR:000002978 ! lymphocyte antigen 6G relationship: lacks_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000038 @@ -7475,22 +7501,6 @@ relationship: has_part PR:000007857 ! erythroid transcription factor relationship: has_part PR:000010799 ! myb proto-oncogene protein relationship: has_part PR:000014362 ! runt-related transcription factor 1 -[Term] -id: CL:0000047 -name: neuronal stem cell -def: "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488] -synonym: "neural stem cell" EXACT [] -synonym: "NSC" EXACT [] -xref: BTO:0002881 -xref: CALOHA:TS-2360 -xref: FMA:86684 -is_a: CL:0000048 {is_inferred="true"} ! multi fate stem cell -is_a: CL:0002319 ! neural cell -intersection_of: CL:0000048 ! multi fate stem cell -intersection_of: part_of UBERON:0001017 ! central nervous system -relationship: develops_from CL:0000133 ! neurectodermal cell -relationship: part_of UBERON:0001017 ! central nervous system - [Term] id: CL:0000048 name: multi fate stem cell @@ -7512,6 +7522,7 @@ id: CL:0000049 name: common myeloid progenitor def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages." [GOC:add, ISBN:0878932437, MESH:D023461] comment: This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059). +subset: human_reference_atlas synonym: "CFU-GEMM" RELATED [ISBN:0878932437] synonym: "CFU-S" RELATED [ISBN:0878932437] synonym: "CMP" EXACT [ISBN:0878932437] @@ -7525,12 +7536,14 @@ is_a: CL:0002032 {is_inferred="true"} ! hematopoietic oligopotent progenitor cel disjoint_from: CL:0000050 ! megakaryocyte-erythroid progenitor cell disjoint_from: CL:0000051 ! common lymphoid progenitor disjoint_from: CL:0000557 ! granulocyte monocyte progenitor cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000050 name: megakaryocyte-erythroid progenitor cell def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [GOC:add, GOC:dsd, GOC:tfm, http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell, MESH:D055015, PMID:16647566] comment: MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2. +subset: human_reference_atlas synonym: "CFU-EM" EXACT [] synonym: "CFU-MegE" EXACT [] synonym: "colony forming unit erythroid megakaryocyte" EXACT [] @@ -7548,6 +7561,7 @@ disjoint_from: CL:0000557 ! granulocyte monocyte progenitor cell disjoint_from: CL:0002009 ! macrophage dendritic cell progenitor relationship: capable_of GO:0030218 ! erythrocyte differentiation relationship: capable_of GO:0030219 ! megakaryocyte differentiation +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000051 @@ -7555,6 +7569,7 @@ name: common lymphoid progenitor alt_id: CL:0000044 def: "A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251] comment: CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. +subset: human_reference_atlas synonym: "CLP" EXACT [] synonym: "committed lymphopoietic stem cell" RELATED [] synonym: "common lymphocyte precursor" EXACT [] @@ -7569,6 +7584,7 @@ is_a: CL:0011026 ! progenitor cell intersection_of: CL:0002032 ! hematopoietic oligopotent progenitor cell intersection_of: capable_of GO:0030098 ! lymphocyte differentiation relationship: capable_of GO:0030098 ! lymphocyte differentiation +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000052 @@ -7605,12 +7621,14 @@ id: CL:0000057 name: fibroblast def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://en.wikipedia.org/wiki/Fibroblast, ISBN:0517223651, MESH:D005347] comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. +subset: human_reference_atlas xref: BTO:0000452 xref: CALOHA:TS-0362 xref: FMA:63877 xref: VHOG:0001482 is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal stem cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000058 @@ -7639,6 +7657,7 @@ relationship: has_part GO:0005929 ! cilium id: CL:0000066 name: epithelial cell def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:D004847] +subset: human_reference_atlas synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 xref: CALOHA:TS-2026 @@ -7650,6 +7669,7 @@ is_a: BFO:0000004 ! independent continuant is_a: CL:0000548 ! animal cell disjoint_from: CL:0000738 ! leukocyte relationship: part_of UBERON:0000483 ! epithelium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000067 @@ -7680,6 +7700,7 @@ is_a: CL:0000068 ! duct epithelial cell id: CL:0000071 name: blood vessel endothelial cell def: "An endothelial cell that lines the vasculature." [GOC:tfm] +subset: human_reference_atlas synonym: "cuboidal endothelial cell of vascular tree" EXACT [] is_a: CL:0000076 {is_inferred="true"} ! squamous epithelial cell is_a: CL:0002139 ! endothelial cell of vascular tree @@ -7687,13 +7708,16 @@ intersection_of: CL:0000076 ! squamous epithelial cell intersection_of: part_of UBERON:0004638 ! blood vessel endothelium relationship: develops_from CL:0002546 ! embryonic blood vessel endothelial progenitor cell relationship: part_of UBERON:0004638 ! blood vessel endothelium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000075 name: columnar/cuboidal epithelial cell def: "A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube." [GO:0002065, https://orcid.org/0000-0001-5208-3432] +subset: human_reference_atlas is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000076 @@ -7705,11 +7729,13 @@ is_a: CL:0000066 ! epithelial cell id: CL:0000077 name: mesothelial cell def: "A flattened epithelial cell of mesenchymal origin that lines the serous cavity." [GOC:tfm, ISBN:0721662544] +subset: human_reference_atlas synonym: "mesotheliocyte" EXACT [] xref: FMA:66773 is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000079 @@ -7771,6 +7797,7 @@ name: T cell alt_id: CL:0000804 alt_id: CL:0000812 def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] +subset: human_reference_atlas synonym: "immature T cell" RELATED [] synonym: "mature T cell" RELATED [] synonym: "T lymphocyte" EXACT [] @@ -7786,12 +7813,14 @@ intersection_of: CL:0000542 ! lymphocyte intersection_of: capable_of GO:0002456 ! T cell mediated immunity relationship: capable_of GO:0002456 ! T cell mediated immunity relationship: develops_from CL:0000827 ! pro-T cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000092 name: osteoclast def: "A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149, PMID:10428500, PMID:15055519, PMID:17380158] comment: Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. +subset: human_reference_atlas synonym: "chondroclast" RELATED [] xref: BTO:0000968 xref: CALOHA:TS-0721 @@ -7818,11 +7847,13 @@ relationship: has_part PR:000007597 ! protein c-Fos relationship: has_part PR:000011178 ! nuclear factor NF-kappa-B p100 subunit relationship: RO:0002104 PR:000001954 ! has plasma membrane part tumor necrosis factor receptor superfamily member 11A relationship: RO:0002104 PR:000002062 ! has plasma membrane part macrophage colony-stimulating factor 1 receptor +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000094 name: granulocyte def: "A leukocyte with abundant granules in the cytoplasm." [GOC:amm, GOC:tfm, http://en.wikipedia.org/wiki/Granulocyte, MESH:D006098] +subset: human_reference_atlas synonym: "granular leucocyte" EXACT [] synonym: "granular leukocyte" EXACT [] synonym: "polymorphonuclear leukocyte" EXACT [] @@ -7850,6 +7881,7 @@ relationship: lacks_plasma_membrane_part PR:000001084 ! T-cell surface glycoprot relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M relationship: RO:0002104 PR:000001332 ! has plasma membrane part carcinoembryonic antigen-related cell adhesion molecule 8 relationship: RO:0002104 PR:000001969 ! has plasma membrane part urokinase plasminogen activator surface receptor +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000095 @@ -7874,11 +7906,13 @@ intersection_of: capable_of GO:0050906 ! detection of stimulus involved in senso id: CL:0000099 name: interneuron def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [GOC:tfm, MESH:D007395] +subset: human_reference_atlas xref: BTO:0003811 xref: FBbt:00005125 xref: FMA:67313 xref: WBbt:0005113 is_a: CL:0000540 ! neuron +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000100 @@ -7964,12 +7998,14 @@ id: CL:0000115 name: endothelial cell def: "An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm." [GOC:tfm, http://en.wikipedia.org/wiki/Endothelial_cell, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855, MESH:D042783, PMID:21275341] comment: From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]. +subset: human_reference_atlas synonym: "endotheliocyte" EXACT [] xref: BTO:0001176 xref: CALOHA:TS-0278 xref: FMA:66772 is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000117 @@ -8073,6 +8109,7 @@ id: CL:0000136 name: fat cell alt_id: CL:0000450 def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:D017667] +subset: human_reference_atlas synonym: "adipocyte" EXACT [] synonym: "adipose cell" EXACT [] xref: BTO:0000443 @@ -8081,6 +8118,7 @@ xref: FMA:63880 is_a: CL:0000325 ! stuff accumulating cell is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal stem cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000138 @@ -8120,6 +8158,7 @@ id: CL:0000148 name: melanocyte alt_id: CL:0000572 def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] +subset: human_reference_atlas synonym: "melanophore" NARROW [] xref: BTO:0000847 xref: CALOHA:TS-0613 @@ -8134,6 +8173,7 @@ intersection_of: develops_from CL:0000541 ! melanoblast intersection_of: has_part GO:0042470 ! melanosome relationship: develops_from CL:0000541 ! melanoblast relationship: has_part GO:0042470 ! melanosome +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000149 @@ -8156,6 +8196,7 @@ relationship: part_of UBERON:0006799 ! glandular epithelium id: CL:0000151 name: secretory cell def: "A cell that specializes in controlled release of one or more substances." [GOC:tfm, ISBN:0721662544] +subset: human_reference_atlas xref: BTO:0003659 xref: FMA:86916 is_a: BFO:0000040 ! material entity @@ -8163,6 +8204,7 @@ is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: capable_of GO:0032940 ! secretion by cell relationship: capable_of GO:0032940 ! secretion by cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000152 @@ -8204,6 +8246,7 @@ relationship: capable_of GO:0043129 ! surfactant homeostasis id: CL:0000158 name: club cell def: "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." [DOI:10.1183/09031936.00146609, DOI:https\://doi.org/10.1378/chest.12-2762, GOC:tfm, PMID:28128362, PMID:7905712] +subset: human_reference_atlas synonym: "bronchiolar non-ciliated cell" EXACT [] synonym: "Clara cell" EXACT [] synonym: "club cell of bronchiole" EXACT [] @@ -8218,6 +8261,7 @@ intersection_of: capable_of GO:0043129 ! surfactant homeostasis intersection_of: RO:0002104 GO:0005902 ! has plasma membrane part microvillus relationship: bearer_of PATO:0001789 ! domed relationship: RO:0002104 GO:0005902 ! has plasma membrane part microvillus +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000159 @@ -8258,12 +8302,14 @@ is_a: CL:0000163 ! endocrine cell id: CL:0000165 name: neuroendocrine cell def: "An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals." [MESH:D055099] +subset: human_reference_atlas synonym: "neurosecretory cell" EXACT [] xref: BTO:0002691 xref: FMA:83810 is_a: CL:0000163 ! endocrine cell is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000710 ! neurecto-epithelial cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000167 @@ -8288,6 +8334,7 @@ id: CL:0000169 name: type B pancreatic cell def: "A cell that secretes insulin and is located towards the center of the islets of Langerhans." [GOC:tfm, http://en.wikipedia.org/wiki/Pancreatic_b_cell, ISBN:0517223651] comment: Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression. +subset: human_reference_atlas synonym: "B-cell of pancreatic islet" EXACT [FMA:70586] synonym: "beta cell" BROAD [ZFA:0009102] synonym: "beta cell islet" RELATED [MA:0002419] @@ -8312,6 +8359,7 @@ intersection_of: capable_of GO:0030073 ! insulin secretion intersection_of: part_of UBERON:0000006 ! islet of Langerhans relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas relationship: part_of UBERON:0000006 ! islet of Langerhans +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000170 @@ -8328,6 +8376,7 @@ relationship: capable_of GO:0070091 ! glucagon secretion id: CL:0000171 name: pancreatic A cell def: "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon." [GOC:tfm, ISBN:0721662544] +subset: human_reference_atlas synonym: "alpha cell of islet of Langerhans" EXACT [] synonym: "pancreatic alpha cell" EXACT [] xref: BTO:0000990 @@ -8340,6 +8389,7 @@ intersection_of: CL:0002067 ! type A enteroendocrine cell intersection_of: part_of UBERON:0001264 ! pancreas relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas relationship: part_of UBERON:0000006 ! islet of Langerhans +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000172 @@ -8353,6 +8403,7 @@ relationship: capable_of GO:0070253 ! somatostatin secretion id: CL:0000173 name: pancreatic D cell def: "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin." [FMA:0517223651, GOC:tfm] +subset: human_reference_atlas synonym: "D-cell of pancreatic islet" EXACT [] synonym: "delta cell of islet" EXACT [] synonym: "delta cell of pancreatic islet" EXACT [] @@ -8368,6 +8419,7 @@ intersection_of: CL:0000502 ! type D enteroendocrine cell intersection_of: part_of UBERON:0001264 ! pancreas relationship: develops_from CL:0002351 ! progenitor cell of endocrine pancreas relationship: part_of UBERON:0000006 ! islet of Langerhans +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000174 @@ -8382,6 +8434,7 @@ id: CL:0000182 name: hepatocyte def: "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated." [GOC:tfm, http://en.wikipedia.org/wiki/Hepatocyte, ISBN:0412046911, MESH:D022781, PMID:19717280] comment: Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive. +subset: human_reference_atlas xref: BTO:0000575 xref: CALOHA:TS-0454 xref: FMA:14515 @@ -8393,6 +8446,7 @@ relationship: capable_of GO:0006699 ! bile acid biosynthetic process relationship: capable_of GO:0098754 ! detoxification relationship: develops_from CL:0005026 ! hepatoblast relationship: part_of UBERON:0002107 ! liver +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000183 @@ -8423,6 +8477,7 @@ relationship: develops_from CL:0000056 ! myoblast id: CL:0000188 name: cell of skeletal muscle def: "A somatic cell located in skeletal muscle." [GOC:tfm] +subset: human_reference_atlas synonym: "skeletal muscle cell" EXACT [] xref: BTO:0004392 xref: CALOHA:TS-2158 @@ -8432,12 +8487,14 @@ is_a: CL:0002371 ! somatic cell intersection_of: CL:0002371 ! somatic cell intersection_of: part_of UBERON:0001134 ! skeletal muscle tissue relationship: part_of UBERON:0001134 ! skeletal muscle tissue +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000192 name: smooth muscle cell alt_id: CL:0000191 def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [http://en.wikipedia.org/wiki/Smooth_muscle_cell, MESH:D032389, PMID:9315361] +subset: human_reference_atlas synonym: "myocytes, smooth muscle" EXACT [MESH:D032389] synonym: "non-striated muscle cell" BROAD [] synonym: "SMCs" EXACT [PMID:9315361] @@ -8448,6 +8505,7 @@ xref: FMA:14072 is_a: CL:0008000 ! non-striated muscle cell is_a: CL:0008007 ! visceral muscle cell relationship: develops_from CL:0000514 ! smooth muscle myoblast +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000197 @@ -8636,6 +8694,7 @@ relationship: bearer_of PATO:0001908 ! multinucleate id: CL:0000232 name: erythrocyte def: "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen." [GOC:tfm, MESH:D004912] +subset: human_reference_atlas synonym: "RBC" EXACT [] synonym: "red blood cell" EXACT [] xref: BTO:0000424 @@ -8654,6 +8713,7 @@ relationship: bearer_of PATO:0002039 ! biconcave relationship: develops_from CL:0000558 ! reticulocyte relationship: lacks_part GO:0005840 ! ribosome relationship: lacks_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000234 @@ -8674,6 +8734,7 @@ id: CL:0000235 name: macrophage def: "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:16213494, PMID:1919437] comment: Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. +subset: human_reference_atlas synonym: "histiocyte" EXACT [] xref: BTO:0000801 xref: CALOHA:TS-0587 @@ -8689,6 +8750,7 @@ intersection_of: capable_of GO:0006909 ! phagocytosis intersection_of: capable_of GO:0031268 ! pseudopodium organization relationship: capable_of GO:0031268 ! pseudopodium organization relationship: develops_from CL:0000576 ! monocyte +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000237 @@ -8701,19 +8763,23 @@ relationship: develops_from CL:0000114 ! surface ectodermal cell [Term] id: CL:0000240 name: stratified squamous epithelial cell +subset: human_reference_atlas is_a: CL:0000076 ! squamous epithelial cell is_a: CL:0000079 ! stratified epithelial cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000242 name: Merkel cell def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [MESH:D018862] +subset: human_reference_atlas synonym: "Merkel's cell" EXACT [] xref: FMA:70548 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) is_a: CL:0000312 {xref="PMID:19782676"} ! keratinocyte is_a: CL:0000710 ! neurecto-epithelial cell relationship: part_of UBERON:0002025 ! stratum basale of epidermis +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000255 @@ -8735,10 +8801,12 @@ relationship: only_in_taxon NCBITaxon:142796 ! Eumycetozoa [Term] id: CL:0000287 name: eye photoreceptor cell +subset: human_reference_atlas is_a: CL:0000210 ! photoreceptor cell intersection_of: CL:0000210 ! photoreceptor cell intersection_of: part_of UBERON:0000970 ! eye relationship: part_of UBERON:0000970 ! eye +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000293 @@ -8794,6 +8862,7 @@ name: keratinocyte alt_id: CL:0002185 def: "An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell." [GOC:dsd, http://en.wikipedia.org/wiki/Keratinocyte, MESH:D015603, PMID:15582983, PMID:15749908, PMID:19727116] comment: Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive. +subset: human_reference_atlas synonym: "keratinized cell of epidermis" EXACT [] synonym: "malpighian cell" EXACT [] xref: BTO:0000667 @@ -8808,15 +8877,18 @@ relationship: capable_of GO:0002775 ! antimicrobial peptide production relationship: capable_of GO:0002776 ! antimicrobial peptide secretion relationship: capable_of GO:0090023 ! positive regulation of neutrophil chemotaxis relationship: part_of UBERON:0001003 ! skin epidermis +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000313 name: serous secreting cell def: "Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid." [GOC:tfm, ISBN:0517223651, ISBN:0721662544] +subset: human_reference_atlas synonym: "serous cell" EXACT [] xref: BTO:0003687 xref: FMA:62511 is_a: CL:0000159 ! seromucus secreting cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000319 @@ -8960,12 +9032,14 @@ relationship: part_of UBERON:0004590 ! sphincter muscle id: CL:0000359 name: vascular associated smooth muscle cell def: "A smooth muscle cell associated with the vasculature." [GOC:dsd, GOC:tfm] +subset: human_reference_atlas synonym: "vascular smooth muscle cell" EXACT [] synonym: "VSMC" EXACT [] is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0002049 ! vasculature relationship: part_of UBERON:0002049 ! vasculature +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000362 @@ -9080,6 +9154,7 @@ is_a: CL:0000151 ! secretory cell id: CL:0000451 name: dendritic cell def: "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] +subset: human_reference_atlas synonym: "interdigitating cell" RELATED [] synonym: "veiled cell" RELATED [] xref: BTO:0002042 @@ -9109,6 +9184,7 @@ relationship: lacks_plasma_membrane_part PR:000001003 ! CD34 molecule relationship: lacks_plasma_membrane_part PR:000001020 ! CD3 epsilon relationship: lacks_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 relationship: lacks_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000457 @@ -9200,7 +9276,9 @@ relationship: part_of UBERON:0004997 ! mucosa of pyloric antrum id: CL:0000509 name: gastrin secreting cell def: "A peptide hormone secreting cell that secretes gastrin." [GO:tfm] +subset: human_reference_atlas is_a: CL:0000167 ! peptide hormone secreting cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000513 @@ -9255,6 +9333,7 @@ relationship: only_in_taxon NCBITaxon:4751 ! Fungi id: CL:0000525 name: syncytiotrophoblast cell def: "A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy." [GOC:tfm, ISBN:0323052908] +subset: human_reference_atlas synonym: "plasmidotrophoblast" EXACT [] synonym: "syncytial trophoblast" EXACT [] synonym: "syntrophoblast" EXACT [] @@ -9263,14 +9342,17 @@ is_a: CL:0000228 ! multinucleate cell is_a: CL:2000060 ! placental villous trophoblast intersection_of: CL:0000351 ! trophoblast cell intersection_of: bearer_of PATO:0001908 ! multinucleate +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000526 name: afferent neuron def: "A neuron which conveys sensory information centrally from the periphery." [GOC:tfm, MESH:D009475] +subset: human_reference_atlas synonym: "input neuron" EXACT [] xref: FMA:87653 is_a: CL:0000540 ! neuron +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000527 @@ -9297,6 +9379,7 @@ id: CL:0000540 name: neuron def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [http://en.wikipedia.org/wiki/Neuron, MESH:D009474] comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. +subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: CALOHA:TS-0683 @@ -9310,6 +9393,7 @@ is_a: CL:0000404 ! electrically signaling cell is_a: CL:0002319 ! neural cell relationship: capable_of GO:0019226 ! transmission of nerve impulse relationship: develops_from CL:0000031 {gci_relation="in_taxon", gci_filler="NCBITaxon:7742", xref="https://github.com/obophenotype/cell-ontology/issues/757"} ! neuroblast (sensu Vertebrata) +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000541 @@ -9328,6 +9412,7 @@ id: CL:0000542 name: lymphocyte def: "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149] comment: Editors note: consider adding taxon constraint to vertebrata (PMID:18025161) +subset: human_reference_atlas xref: BTO:0000775 xref: CALOHA:TS-0583 xref: FMA:62863 @@ -9344,6 +9429,7 @@ relationship: develops_from CL:0000051 ! common lymphoid progenitor relationship: has_part CL:0017500 ! neutrophillic cytoplasm relationship: has_part CL:0017505 ! increased nucleus size relationship: has_part GO:0000792 ! heterochromatin +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000547 @@ -9459,6 +9545,7 @@ id: CL:0000553 name: megakaryocyte progenitor cell def: "The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative)." [GOC:dsd, GOC:tfm, ISBN:0721601464] comment: Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative. +subset: human_reference_atlas synonym: "CFU-Meg" EXACT [PMID:11722431, PMID:12482498] synonym: "colony-forming unit-megakaryocyte" EXACT [] synonym: "Meg-CFC" EXACT [PMCID:PMC1794060] @@ -9505,12 +9592,14 @@ relationship: lacks_plasma_membrane_part PR:000001839 ! T-cell surface glycoprot relationship: lacks_plasma_membrane_part PR:000001889 ! CD14 molecule relationship: lacks_plasma_membrane_part PR:000002978 ! lymphocyte antigen 6G relationship: lacks_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000556 name: megakaryocyte def: "A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm." [http://en.wikipedia.org/wiki/Megakaryocyte, ISBN:0721601464, MESH:D008533] comment: Megakaryocytes are reportedly CD181-positive and CD182-positive. +subset: human_reference_atlas synonym: "megacaryocyte" EXACT [] synonym: "megalocaryocyte" EXACT [] synonym: "megalokaryocyte" EXACT [] @@ -9525,6 +9614,7 @@ intersection_of: part_of UBERON:0002371 ! bone marrow disjoint_from: CL:0000764 ! erythroid lineage cell relationship: bearer_of PATO:0001393 ! euploid relationship: develops_from CL:0000553 ! megakaryocyte progenitor cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000557 @@ -9602,6 +9692,7 @@ id: CL:0000559 name: promonocyte def: "A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules." [GOC:tfm, ISBN:0721601464] comment: Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. +subset: human_reference_atlas xref: BTO:0004657 xref: FMA:83551 is_a: CL:0000763 ! myeloid cell @@ -9613,6 +9704,7 @@ intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alp relationship: develops_from CL:0000040 ! monoblast relationship: has_part GO:0042582 ! azurophil granule relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000562 @@ -9675,6 +9767,7 @@ id: CL:0000569 name: cardiac mesenchymal cell def: "A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field." [PMID:18816864] is_a: CL:0008019 ! mesenchymal cell +is_a: CL:2000073 ! migratory cardiac neural crest cell intersection_of: CL:0008019 ! mesenchymal cell intersection_of: RO:0002203 CL:0002494 ! develops into cardiocyte relationship: RO:0002203 CL:0002494 ! develops into cardiocyte @@ -9683,17 +9776,20 @@ relationship: RO:0002203 CL:0002494 ! develops into cardiocyte id: CL:0000573 name: retinal cone cell def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [MESH:D017949] +subset: human_reference_atlas xref: BTO:0001036 xref: CALOHA:TS-0866 xref: FMA:67748 is_a: CL:0010009 ! camera-type eye photoreceptor cell relationship: develops_from CL:0002672 ! retinal progenitor cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000575 name: corneal epithelial cell alt_id: CL:1000431 def: "An epithelial cell of the cornea." [GOC:tfm] +subset: human_reference_atlas synonym: "epithelial cell of cornea" EXACT [FMA:70551] xref: BTO:0004298 xref: CALOHA:TS-0173 @@ -9703,12 +9799,14 @@ is_a: CL:0002159 ! general ecto-epithelial cell intersection_of: CL:0000076 ! squamous epithelial cell intersection_of: part_of UBERON:0001772 ! corneal epithelium relationship: part_of UBERON:0001772 ! corneal epithelium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000576 name: monocyte def: "Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells." [GO_REF:0000031, MESH:D009000] comment: Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. +subset: human_reference_atlas xref: BTO:0000876 xref: CALOHA:TS-0638 xref: FMA:62864 @@ -9724,6 +9822,7 @@ relationship: capable_of GO:0030225 ! macrophage differentiation relationship: capable_of GO:0030316 ! osteoclast differentiation relationship: capable_of GO:0043011 ! myeloid dendritic cell differentiation relationship: develops_from CL:0000559 ! promonocyte +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000586 @@ -9777,11 +9876,13 @@ relationship: bearer_of PATO:0070015 ! pyramidal family morphology id: CL:0000604 name: retinal rod cell def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [MESH:D017948] +subset: human_reference_atlas xref: BTO:0001024 xref: CALOHA:TS-0870 xref: FMA:67747 is_a: CL:0010009 ! camera-type eye photoreceptor cell relationship: develops_from CL:0002672 ! retinal progenitor cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000622 @@ -9807,9 +9908,11 @@ is_a: CL:0000003 ! native cell id: CL:0000646 name: basal cell def: "Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament." [GOC:tfm, ISBN:0517223651] +subset: human_reference_atlas xref: BTO:0000939 xref: FMA:62516 is_a: CL:0000036 ! epithelial fate stem cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000667 @@ -9961,6 +10064,7 @@ relationship: part_of UBERON:0002405 ! immune system id: CL:0000740 name: retinal ganglion cell def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [GOC:dph] +subset: human_reference_atlas synonym: "gangliocyte" EXACT [] synonym: "ganglion cell of retina" EXACT [] synonym: "RGC" EXACT [] @@ -9969,6 +10073,7 @@ xref: FMA:67765 xref: MESH:D012165 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) relationship: RO:0002100 UBERON:0000966 ! has soma location retina +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000746 @@ -9976,6 +10081,7 @@ name: cardiac muscle cell alt_id: FMA:83808 def: "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908, PMID:22426062, PMID:4711263] comment: This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. +subset: human_reference_atlas synonym: "cardiac muscle fiber" EXACT [GO:0048739] synonym: "cardiac myocyte" EXACT [] synonym: "cardiocyte" BROAD [] @@ -9995,11 +10101,13 @@ intersection_of: participates_in GO:0060047 ! heart contraction relationship: bearer_of PATO:0002478 ! transversely striated relationship: develops_from CL:0000513 ! cardiac muscle myoblast relationship: participates_in GO:0060047 ! heart contraction +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000748 name: retinal bipolar neuron def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [PMID:14689473] +subset: human_reference_atlas is_a: CL:0000103 ! bipolar neuron is_a: CL:0000679 ! glutamatergic neuron is_a: CL:0008028 ! visual system neuron @@ -10007,11 +10115,13 @@ is_a: CL:0009004 ! retinal cell intersection_of: CL:0000103 ! bipolar neuron intersection_of: RO:0002100 UBERON:0000966 ! has soma location retina relationship: RO:0002100 UBERON:0000966 ! has soma location retina +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000763 name: myeloid cell def: "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [GOC:add] +subset: human_reference_atlas xref: BTO:0001441 xref: CALOHA:TS-0647 xref: MESH:D022423 @@ -10020,6 +10130,7 @@ is_a: CL:0000988 {is_inferred="true"} ! hematopoietic cell intersection_of: CL:0000988 ! hematopoietic cell intersection_of: develops_from CL:0000049 ! common myeloid progenitor relationship: develops_from CL:0000049 ! common myeloid progenitor +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000764 @@ -10027,11 +10138,13 @@ name: erythroid lineage cell alt_id: CL:0002156 def: "A immature or mature cell in the lineage leading to and including erythrocytes." [GOC:add, GOC:tfm] comment: Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes. +subset: human_reference_atlas synonym: "erythropoietic cell" EXACT [] xref: CALOHA:TS-0290 xref: FMA:62845 xref: FMA:83516 is_a: CL:0000763 ! myeloid cell +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000765 @@ -10088,6 +10201,7 @@ intersection_of: develops_from CL:0000049 ! common myeloid progenitor id: CL:0000775 name: neutrophil def: "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464] +subset: human_reference_atlas synonym: "neutrocyte" EXACT [] synonym: "neutrophil leucocyte" EXACT [] synonym: "neutrophil leukocyte" EXACT [] @@ -10110,6 +10224,7 @@ intersection_of: RO:0002104 PR:000001479 ! has plasma membrane part low affinity intersection_of: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin relationship: RO:0002104 PR:000001479 ! has plasma membrane part low affinity immunoglobulin gamma Fc region receptor II relationship: RO:0002104 PR:000001879 ! has plasma membrane part leukosialin +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000776 @@ -10131,22 +10246,26 @@ id: CL:0000778 name: mononuclear osteoclast def: "A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts." [GOC:add, GOC:tfm, PMID:12713016, PMID:15055519, PMID:17380158, PMID:9415452] comment: Morphology: mononuclear, highly vesicular. +subset: human_reference_atlas is_a: CL:0000092 {is_inferred="true"} ! osteoclast is_a: CL:0000842 ! mononuclear cell intersection_of: CL:0000092 ! osteoclast intersection_of: bearer_of PATO:0001407 ! mononucleate +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000779 name: multinuclear osteoclast def: "A specialized multinuclear osteoclast associated with the absorption and removal of bone." [GOC:add, PMID:12713016, PMID:9415452] comment: Morphology: multinucleated, highly vesicular. +subset: human_reference_atlas synonym: "multinucleated osteoclast" EXACT [] is_a: CL:0000092 {is_inferred="true"} ! osteoclast is_a: CL:0000228 ! multinucleate cell intersection_of: CL:0000092 ! osteoclast intersection_of: bearer_of PATO:0001908 ! multinucleate relationship: develops_from CL:0000778 ! mononuclear osteoclast +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000782 @@ -10216,6 +10335,7 @@ relationship: lacks_part GO:0042582 ! azurophil granule id: CL:0000836 name: promyelocyte def: "A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative." [GOC:add, GOC:amm, GOC:tfm, http://www.cap.org, ISBN:0721601464] +subset: human_reference_atlas xref: CALOHA:TS-0825 xref: FMA:83530 is_a: CL:0000763 ! myeloid cell @@ -10240,12 +10360,14 @@ relationship: lacks_plasma_membrane_part PR:000001483 ! low affinity immunoglobu relationship: lacks_plasma_membrane_part PR:000001932 ! signal transducer CD24 relationship: RO:0002104 PR:000001456 ! has plasma membrane part alpha-(1,3)-fucosyltransferase 4 relationship: RO:0002104 PR:000001892 ! has plasma membrane part CD33 molecule +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000837 name: hematopoietic multipotent progenitor cell def: "A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans." [GOC:add, GOC:tfm, PMID:19022770] comment: Markers differ between mouse and human. +subset: human_reference_atlas synonym: "hemopoietic progenitor cell" EXACT [] synonym: "MPP" EXACT [] xref: BTO:0000725 @@ -10285,6 +10407,7 @@ relationship: lacks_plasma_membrane_part PR:000001889 ! CD14 molecule relationship: lacks_plasma_membrane_part PR:000002978 ! lymphocyte antigen 6G relationship: lacks_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000838 @@ -10390,6 +10513,7 @@ id: CL:0000990 name: conventional dendritic cell def: "Conventional dendritic cell is a dendritic cell that is CD11c-high." [GO_REF:0000031, GOC:amm, PMID:17850486] comment: Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive. +subset: human_reference_atlas synonym: "cDC" EXACT [] synonym: "DC1" EXACT [] synonym: "dendritic reticular cell" EXACT [] @@ -10401,6 +10525,7 @@ is_a: CL:0000451 {is_inferred="true"} ! dendritic cell intersection_of: CL:0000451 ! dendritic cell intersection_of: RO:0015015 PR:000001013 ! has high plasma membrane amount integrin alpha-X relationship: RO:0015015 PR:000001013 ! has high plasma membrane amount integrin alpha-X +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0000995 @@ -10628,8 +10753,8 @@ is_a: BFO:0000004 ! independent continuant is_a: CL:0000548 {is_inferred="true"} ! animal cell intersection_of: CL:0000548 ! animal cell intersection_of: part_of UBERON:0001474 ! bone element +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 relationship: part_of UBERON:0001474 ! bone element -created_by: adiehl creation_date: 2011-11-16T04:28:16Z [Term] @@ -10637,6 +10762,7 @@ id: CL:0001054 name: CD14-positive monocyte def: "A monocyte that expresses CD14 and is negative for the lineage markers CD3, CD19, and CD20." [GOC:add, PMID:22343568] comment: This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes. +subset: human_reference_atlas synonym: "monocyte" NARROW [PMID:22343568] is_a: CL:0000576 ! monocyte intersection_of: CL:0000576 ! monocyte @@ -10648,6 +10774,7 @@ relationship: lacks_plasma_membrane_part PR:000001002 ! CD19 molecule relationship: lacks_plasma_membrane_part PR:000001020 ! CD3 epsilon relationship: lacks_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: RO:0002104 PR:000001889 ! has plasma membrane part CD14 molecule +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0001059 @@ -10698,6 +10825,7 @@ intersection_of: lacks_plasma_membrane_part PR:000001839 ! T-cell surface glycop intersection_of: lacks_plasma_membrane_part PR:000001889 ! CD14 molecule intersection_of: lacks_plasma_membrane_part PR:000002978 ! lymphocyte antigen 6G intersection_of: lacks_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_plasma_membrane_part PR:000001002 ! CD19 molecule relationship: lacks_plasma_membrane_part PR:000001004 ! CD4 molecule relationship: lacks_plasma_membrane_part PR:000001012 ! integrin alpha-M @@ -10710,7 +10838,6 @@ relationship: lacks_plasma_membrane_part PR:000001839 ! T-cell surface glycoprot relationship: lacks_plasma_membrane_part PR:000001889 ! CD14 molecule relationship: lacks_plasma_membrane_part PR:000002978 ! lymphocyte antigen 6G relationship: lacks_plasma_membrane_part PR:000002981 ! lymphocyte antigen 76 (mouse) -created_by: tmeehan creation_date: 2010-01-06T03:43:27Z [Term] @@ -10723,8 +10850,8 @@ is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell intersection_of: bearer_of PATO:0000460 ! abnormal relationship: bearer_of PATO:0000460 ! abnormal -relationship: dc-creator http://orcid.org/0000-0001-9990-8331 -property_value: http://purl.org/dc/elements/1.1/date 2017-01-30T18:53:32Z xsd:dateTime +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 +property_value: http://purl.org/dc/terms/date 2017-01-30T18:53:32Z xsd:dateTime [Term] id: CL:0001063 @@ -10738,8 +10865,8 @@ is_a: CL:0001061 ! abnormal cell intersection_of: CL:0001061 ! abnormal cell intersection_of: bearer_of PATO:0002011 ! neoplastic relationship: bearer_of PATO:0002011 ! neoplastic -relationship: dc-creator http://orcid.org/0000-0001-9990-8331 -property_value: http://purl.org/dc/elements/1.1/date 2017-01-30T19:16:26Z xsd:dateTime +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 +property_value: http://purl.org/dc/terms/date 2017-01-30T19:16:26Z xsd:dateTime [Term] id: CL:0001064 @@ -10752,8 +10879,8 @@ is_a: CL:0001063 ! neoplastic cell intersection_of: CL:0001063 ! neoplastic cell intersection_of: bearer_of PATO:0002097 ! neoplastic, malignant relationship: bearer_of PATO:0002097 ! neoplastic, malignant -relationship: dc-creator http://orcid.org/0000-0001-9990-8331 -property_value: http://purl.org/dc/elements/1.1/date 2017-01-30T19:39:12Z xsd:dateTime +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 +property_value: http://purl.org/dc/terms/date 2017-01-30T19:39:12Z xsd:dateTime [Term] id: CL:0001066 @@ -10811,6 +10938,7 @@ intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A intersection_of: lacks_plasma_membrane_part PR:000009127 ! integrin alpha-IIb intersection_of: RO:0002104 PR:000001345 ! has plasma membrane part endoglin intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002006 ! Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell relationship: lacks_plasma_membrane_part GO:0033001 ! Fc-gamma receptor III complex relationship: lacks_plasma_membrane_part PR:000001833 ! SLAM family member 1 @@ -10820,7 +10948,6 @@ relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/ relationship: lacks_plasma_membrane_part PR:000009127 ! integrin alpha-IIb relationship: RO:0002104 PR:000001345 ! has plasma membrane part endoglin relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor -created_by: tmeehan creation_date: 2010-04-26T10:14:16Z [Term] @@ -10833,10 +10960,10 @@ intersection_of: CL:0000557 ! granulocyte monocyte progenitor cell intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: RO:0002104 PR:000001865 ! has plasma membrane part interleukin-3 receptor class 2 alpha chain +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0001026 ! CD34-positive, CD38-positive common myeloid progenitor relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -created_by: tmeehan creation_date: 2010-01-13T03:19:22Z [Term] @@ -10850,11 +10977,11 @@ intersection_of: lacks_plasma_membrane_part PR:000001015 ! receptor-type tyrosin intersection_of: lacks_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule intersection_of: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: lacks_plasma_membrane_part PR:000001865 ! interleukin-3 receptor class 2 alpha chain relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule relationship: RO:0002104 PR:000001408 ! has plasma membrane part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 -created_by: tmeehan creation_date: 2010-01-13T03:43:10Z [Term] @@ -10871,6 +10998,7 @@ intersection_of: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 recepto intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor intersection_of: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_plasma_membrane_part PR:000001003 ! CD34 molecule relationship: lacks_plasma_membrane_part PR:000001479 ! low affinity immunoglobulin gamma Fc region receptor II relationship: lacks_plasma_membrane_part PR:000001843 ! Thy-1 membrane glycoprotein @@ -10878,7 +11006,6 @@ relationship: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 receptor s relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: RO:0015016 GO:0033001 ! has low plasma membrane amount Fc-gamma receptor III complex -created_by: tmeehan creation_date: 2010-01-13T03:43:12Z [Term] @@ -10894,8 +11021,8 @@ intersection_of: capable_of GO:0030224 ! monocyte differentiation intersection_of: capable_of GO:0043011 ! myeloid dendritic cell differentiation relationship: capable_of GO:0030224 ! monocyte differentiation relationship: capable_of GO:0043011 ! myeloid dendritic cell differentiation +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell -created_by: tmeehan creation_date: 2010-01-19T02:51:58Z [Term] @@ -10910,13 +11037,13 @@ intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A intersection_of: RO:0002104 PR:000002981 ! has plasma membrane part lymphocyte antigen 76 (mouse) intersection_of: RO:0015015 PR:000001945 ! has high plasma membrane amount transferrin receptor protein 1 intersection_of: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002000 ! Kit-positive erythroid progenitor cell relationship: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: RO:0002104 PR:000002981 ! has plasma membrane part lymphocyte antigen 76 (mouse) relationship: RO:0015015 PR:000001945 ! has high plasma membrane amount transferrin receptor protein 1 relationship: RO:0015016 PR:000002065 ! has low plasma membrane amount mast/stem cell growth factor receptor -created_by: tmeehan creation_date: 2010-04-26T10:31:56Z [Term] @@ -10930,12 +11057,12 @@ intersection_of: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 recepto intersection_of: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002012 ! Kit-low proerythroblast relationship: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha relationship: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) -created_by: tmeehan creation_date: 2010-04-26T10:41:22Z [Term] @@ -10949,12 +11076,12 @@ intersection_of: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 recepto intersection_of: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002014 ! Kit-negative, Ly-76 high basophilic erythroblast relationship: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha relationship: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) -created_by: tmeehan creation_date: 2010-04-26T10:53:11Z [Term] @@ -10969,13 +11096,13 @@ intersection_of: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth intersection_of: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) intersection_of: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002015 ! Kit-negative, Ly-76 high polychromatophilic erythroblast relationship: lacks_plasma_membrane_part PR:000001869 ! interleukin-7 receptor subunit alpha relationship: lacks_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor relationship: lacks_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) relationship: RO:0015016 PR:000001945 ! has low plasma membrane amount transferrin receptor protein 1 -created_by: tmeehan creation_date: 2010-04-26T11:04:15Z [Term] @@ -10986,9 +11113,9 @@ comment: Marker associated with mouse cells. is_a: CL:0002422 {is_inferred="true"} ! enucleated reticulocyte intersection_of: CL:0002422 ! enucleated reticulocyte intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002017 ! Kit-negative, Ly-76 high orthochromatophilic erythroblasts relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) -created_by: tmeehan creation_date: 2010-04-26T11:37:00Z [Term] @@ -10999,9 +11126,9 @@ comment: Marker is associated with mouse cell types. is_a: CL:0000595 {is_inferred="true"} ! enucleate erythrocyte intersection_of: CL:0000595 ! enucleate erythrocyte intersection_of: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002019 ! Ly-76 high reticulocyte relationship: RO:0015015 PR:000002981 ! has high plasma membrane amount lymphocyte antigen 76 (mouse) -created_by: tmeehan creation_date: 2010-04-26T11:51:27Z [Term] @@ -11014,8 +11141,8 @@ intersection_of: CL:0000988 ! hematopoietic cell intersection_of: bearer_of PATO:0001400 ! unipotent disjoint_from: CL:0002032 ! hematopoietic oligopotent progenitor cell relationship: bearer_of PATO:0001400 ! unipotent +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002032 ! hematopoietic oligopotent progenitor cell -created_by: tmeehan creation_date: 2010-01-06T03:43:20Z [Term] @@ -11028,8 +11155,8 @@ is_a: CL:0008001 ! hematopoietic precursor cell intersection_of: CL:0000988 ! hematopoietic cell intersection_of: bearer_of PATO:0001401 ! oligopotent relationship: bearer_of PATO:0001401 ! oligopotent +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000837 ! hematopoietic multipotent progenitor cell -created_by: tmeehan creation_date: 2010-01-06T03:43:27Z [Term] @@ -11044,10 +11171,10 @@ intersection_of: CL:0001008 ! Kit and Sca1-positive hematopoietic stem cell intersection_of: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002034 ! long term hematopoietic stem cell relationship: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 relationship: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule -created_by: tmeehan creation_date: 2010-01-08T09:19:25Z [Term] @@ -11063,10 +11190,10 @@ intersection_of: lacks_plasma_membrane_part PR:000001003 ! CD34 molecule intersection_of: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 intersection_of: RO:0015016 PR:000001843 ! has low plasma membrane amount Thy-1 membrane glycoprotein +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_plasma_membrane_part PR:000001003 ! CD34 molecule relationship: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 relationship: RO:0015016 PR:000001843 ! has low plasma membrane amount Thy-1 membrane glycoprotein -created_by: tmeehan creation_date: 2010-01-08T09:19:28Z [Term] @@ -11080,12 +11207,12 @@ intersection_of: lacks_plasma_membrane_part PR:000001833 ! SLAM family member 1 intersection_of: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002036 ! Slamf1-positive multipotent progenitor cell relationship: lacks_plasma_membrane_part PR:000001833 ! SLAM family member 1 relationship: lacks_plasma_membrane_part PR:000002001 ! receptor-type tyrosine-protein kinase FLT3 relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 -created_by: tmeehan creation_date: 2010-01-08T11:16:33Z [Term] @@ -11100,11 +11227,11 @@ intersection_of: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family intersection_of: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor intersection_of: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 disjoint_from: CL:0002043 ! CD34-positive, CD38-negative multipotent progenitor cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002033 ! short term hematopoietic stem cell relationship: RO:0002104 PR:000001833 ! has plasma membrane part SLAM family member 1 relationship: RO:0002104 PR:000002065 ! has plasma membrane part mast/stem cell growth factor receptor relationship: RO:0002104 PR:000002979 ! has plasma membrane part lymphocyte antigen 6A-2/6E-1 -created_by: tmeehan creation_date: 2010-01-08T11:16:35Z [Term] @@ -11118,17 +11245,18 @@ intersection_of: lacks_plasma_membrane_part PR:000001015 ! receptor-type tyrosin intersection_of: lacks_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 intersection_of: lacks_plasma_membrane_part PR:000001843 ! Thy-1 membrane glycoprotein intersection_of: RO:0002104 PR:000001003 ! has plasma membrane part CD34 molecule +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0001024 ! CD34-positive, CD38-negative hematopoietic stem cell relationship: lacks_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA relationship: lacks_plasma_membrane_part PR:000001408 ! ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 relationship: lacks_plasma_membrane_part PR:000001843 ! Thy-1 membrane glycoprotein -created_by: tmeehan creation_date: 2010-01-12T11:14:15Z [Term] id: CL:0002064 name: pancreatic acinar cell def: "A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key=pancreatic%20acinar%20cells, ISBN:0517223651, PMID:20395539] +subset: human_reference_atlas synonym: "acinar cell of pancreas" EXACT [] xref: BTO:0000028 xref: CALOHA:TS-0737 @@ -11137,9 +11265,10 @@ is_a: CL:0000622 {is_inferred="true"} ! acinar cell is_a: CL:1001599 ! pancreas exocrine glandular cell intersection_of: CL:0000622 ! acinar cell intersection_of: part_of UBERON:0001263 ! pancreatic acinus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: has_part GO:0042589 ! zymogen granule membrane relationship: part_of UBERON:0001263 ! pancreatic acinus -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-06-24T03:16:29Z [Term] @@ -11151,7 +11280,7 @@ is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000170 ! glucagon secreting cell intersection_of: CL:0000164 ! enteroendocrine cell intersection_of: capable_of GO:0070091 ! glucagon secretion -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-10T10:48:54Z [Term] @@ -11164,7 +11293,7 @@ synonym: "Purkinje muscle cell" EXACT [] xref: BTO:0001032 xref: FMA:14146 is_a: CL:0002086 ! specialized cardiac myocyte -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-28T08:36:15Z [Term] @@ -11178,7 +11307,7 @@ synonym: "pacemaker cell" BROAD [] xref: BTO:0004190 xref: FMA:67101 is_a: CL:0002086 ! specialized cardiac myocyte -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-29T11:41:37Z [Term] @@ -11187,7 +11316,7 @@ name: transitional myocyte def: "Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes." [FMA:67142, GOC:tfm] xref: FMA:67142 is_a: CL:0002086 ! specialized cardiac myocyte -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-29T02:39:32Z [Term] @@ -11197,7 +11326,7 @@ def: "The myoendocrine cellis a specialized myocyte localized mainly in the righ xref: FMA:67111 is_a: CL:0000163 ! endocrine cell is_a: CL:0002086 ! specialized cardiac myocyte -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-06-29T11:50:47Z [Term] @@ -11207,8 +11336,8 @@ def: "An epithelial cell derived from endoderm." [FMA:69075, GOC:tfm] xref: FMA:69075 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000223 ! endodermal cell -created_by: tmeehan creation_date: 2010-06-29T03:38:14Z [Term] @@ -11220,8 +11349,8 @@ is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: develops_from CL:0000221 ! ectodermal cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000221 ! ectodermal cell -created_by: tmeehan creation_date: 2010-06-29T03:38:22Z [Term] @@ -11234,14 +11363,15 @@ is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: develops_from CL:0000222 ! mesodermal cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000222 ! mesodermal cell -created_by: tmeehan creation_date: 2010-06-29T03:49:14Z [Term] id: CL:0002079 name: pancreatic ductal cell def: "Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH." [FMA:63099, GOC:tfm, PMID:14740223] +subset: human_reference_atlas xref: FMA:63099 is_a: BFO:0000040 ! material entity is_a: CL:0000069 ! branched duct epithelial cell @@ -11250,14 +11380,16 @@ intersection_of: CL:0000083 ! epithelial cell of pancreas intersection_of: capable_of GO:0015106 ! bicarbonate transmembrane transporter activity intersection_of: part_of UBERON:0001064 ! ventral pancreatic duct relationship: capable_of GO:0015106 ! bicarbonate transmembrane transporter activity +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001064 ! ventral pancreatic duct -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-06-30T08:49:43Z [Term] id: CL:0002080 name: pancreatic centro-acinar cell def: "A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types." [GOC:tfm, PMID:12142741, PMID:20018761, PMID:8185160] +subset: human_reference_atlas synonym: "centroacinar cell of Langerhans" EXACT [] synonym: "pancreatic centroacinar cell" EXACT [] xref: FMA:62455 @@ -11267,8 +11399,9 @@ intersection_of: CL:0000083 ! epithelial cell of pancreas intersection_of: capable_of GO:0015106 ! bicarbonate transmembrane transporter activity intersection_of: part_of UBERON:0001263 ! pancreatic acinus relationship: capable_of GO:0015106 ! bicarbonate transmembrane transporter activity +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001263 ! pancreatic acinus -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-06-30T08:49:52Z [Term] @@ -11277,7 +11410,7 @@ name: specialized cardiac myocyte def: "A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart." [FMA:67968, GOC:tfm] xref: FMA:67968 is_a: CL:0000746 ! cardiac muscle cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-07-21T01:33:38Z [Term] @@ -11289,8 +11422,8 @@ xref: FMA:62855 is_a: CL:0000738 {is_inferred="true"} ! leukocyte intersection_of: CL:0000738 ! leukocyte intersection_of: lacks_part GO:0030141 ! secretory granule +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_part GO:0030141 ! secretory granule -created_by: tmeehan creation_date: 2010-07-22T11:30:33Z [Term] @@ -11307,7 +11440,7 @@ is_a: CL:0000710 {is_inferred="true"} ! neurecto-epithelial cell intersection_of: CL:0000710 ! neurecto-epithelial cell intersection_of: capable_of GO:0043134 ! regulation of hindgut contraction relationship: capable_of GO:0043134 ! regulation of hindgut contraction -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-07-22T03:26:00Z [Term] @@ -11321,19 +11454,21 @@ xref: MESH:D001854 is_a: CL:0001035 {is_inferred="true"} ! bone cell intersection_of: CL:0001035 ! bone cell intersection_of: part_of UBERON:0002371 ! bone marrow +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002371 ! bone marrow -created_by: tmeehan creation_date: 2010-07-22T04:48:15Z [Term] id: CL:0002095 name: hilus cell of ovary def: "A cell in the hilum of the ovary that produces androgens." [GOC:tfm, ISBN:068340007X] +subset: human_reference_atlas synonym: "hilar cell of ovary" EXACT [] xref: FMA:18710 is_a: CL:0000593 ! androgen secreting cell is_a: CL:0002132 ! stromal cell of ovary -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-08-23T11:18:18Z [Term] @@ -11345,8 +11480,8 @@ xref: FMA:72299 is_a: CL:0000499 ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0000992 ! ovary +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000992 ! ovary -created_by: tmeehan creation_date: 2010-08-23T12:10:31Z [Term] @@ -11360,32 +11495,36 @@ xref: BTO:0001854 xref: CALOHA:TS-1106 xref: FMA:67755 is_a: CL:0000115 ! endothelial cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-24T02:06:40Z [Term] id: CL:0002144 name: capillary endothelial cell def: "An endothelial cell found in capillaries." [GOC:tfm] +subset: human_reference_atlas xref: BTO:0004956 xref: CALOHA:TS-0112 xref: FMA:67756 is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0001915 ! endothelium of capillary +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001915 ! endothelium of capillary -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-08-24T10:15:00Z [Term] id: CL:0002145 name: ciliated columnar cell of tracheobronchial tree def: "A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree." [GOC:tfm, ISBN:0517223651] +subset: human_reference_atlas xref: FMA:70542 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0005012 ! multi-ciliated epithelial cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002209 ! intermediate epitheliocyte -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-08-24T03:38:29Z [Term] @@ -11397,8 +11536,8 @@ xref: FMA:256161 is_a: CL:0002076 {is_inferred="true"} ! endo-epithelial cell intersection_of: CL:0002076 ! endo-epithelial cell intersection_of: part_of UBERON:0000995 ! uterus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000995 ! uterus -created_by: tmeehan creation_date: 2010-08-24T10:45:54Z [Term] @@ -11407,7 +11546,7 @@ name: general ecto-epithelial cell def: "Epithelial cells derived from general body ectoderm and ectoderm placodes." [GOC:tfm] xref: FMA:70556 is_a: CL:0002077 ! ecto-epithelial cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-26T08:31:08Z [Term] @@ -11419,8 +11558,8 @@ is_a: CL:0002251 ! epithelial cell of alimentary canal is_a: CL:0002336 ! buccal mucosa cell intersection_of: CL:0000237 ! keratinizing barrier epithelial cell intersection_of: part_of UBERON:0003729 ! mouth mucosa +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0003729 ! mouth mucosa -created_by: tmeehan creation_date: 2010-08-26T02:51:30Z [Term] @@ -11432,8 +11571,8 @@ xref: FMA:62948 is_a: CL:0002251 {is_inferred="true"} ! epithelial cell of alimentary canal intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000945 ! stomach +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000945 ! stomach -created_by: tmeehan creation_date: 2010-08-25T03:22:08Z [Term] @@ -11445,8 +11584,8 @@ xref: FMA:63464 is_a: CL:0002659 ! glandular cell of stomach intersection_of: CL:0002178 ! epithelial cell of stomach intersection_of: part_of UBERON:0001199 ! mucosa of stomach +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001199 ! mucosa of stomach -created_by: tmeehan creation_date: 2010-08-25T03:38:51Z [Term] @@ -11460,8 +11599,8 @@ is_a: CL:0000152 ! exocrine cell is_a: CL:0002180 ! mucous cell of stomach intersection_of: CL:0000048 ! multi fate stem cell intersection_of: part_of UBERON:0000325 ! gastric gland +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000325 ! gastric gland -created_by: tmeehan creation_date: 2010-08-25T03:57:08Z [Term] @@ -11476,7 +11615,7 @@ is_a: CL:0011026 ! progenitor cell is_a: CL:1000428 ! stem cell of epidermis intersection_of: CL:0000646 ! basal cell intersection_of: part_of UBERON:0001003 ! skin epidermis -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-26T03:12:49Z [Term] @@ -11488,7 +11627,7 @@ is_a: CL:0000839 {is_inferred="true"} ! myeloid lineage restricted progenitor ce intersection_of: CL:0000839 ! myeloid lineage restricted progenitor cell intersection_of: capable_of GO:0030851 ! granulocyte differentiation relationship: capable_of GO:0030851 ! granulocyte differentiation -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-30T12:54:27Z [Term] @@ -11500,7 +11639,7 @@ is_a: CL:0000839 {is_inferred="true"} ! myeloid lineage restricted progenitor ce intersection_of: CL:0000839 ! myeloid lineage restricted progenitor cell intersection_of: capable_of GO:0030224 ! monocyte differentiation relationship: capable_of GO:0030224 ! monocyte differentiation -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-08-30T01:27:48Z [Term] @@ -11512,9 +11651,9 @@ xref: FMA:86577 is_a: CL:0000048 {is_inferred="true"} ! multi fate stem cell intersection_of: CL:0000048 ! multi fate stem cell intersection_of: part_of UBERON:0002107 ! liver +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002107 ! liver property_value: seeAlso https://github.com/obophenotype/cell-ontology/issues/800 xsd:string -created_by: tmeehan creation_date: 2010-08-30T02:00:42Z [Term] @@ -11526,8 +11665,8 @@ xref: FMA:66816 is_a: CL:0002632 ! epithelial cell of lower respiratory tract intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0007196 ! tracheobronchial tree +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0007196 ! tracheobronchial tree -created_by: tmeehan creation_date: 2010-09-02T02:09:14Z [Term] @@ -11537,7 +11676,7 @@ def: "An epithelial cell present in the trachea and bronchi; columnar in shape; synonym: "undifferentiated columnar cell of tracheobronchial tree" EXACT [] xref: FMA:69060 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-02T02:53:59Z [Term] @@ -11548,21 +11687,23 @@ xref: FMA:70950 is_a: CL:0000066 ! epithelial cell is_a: CL:0000306 ! crystallin accumulating cell is_a: CL:0002371 ! somatic cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000965 ! lens of camera-type eye -created_by: tmeehan creation_date: 2010-09-07T10:38:03Z [Term] id: CL:0002224 name: lens epithelial cell def: "A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth." [GOC:tfm, http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium, ISBN:0721662544] +subset: human_reference_atlas xref: FMA:67559 is_a: CL:0000075 {is_inferred="true"} ! columnar/cuboidal epithelial cell is_a: CL:0002222 ! vertebrate lens cell intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell intersection_of: part_of UBERON:0001803 ! epithelium of lens +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001803 ! epithelium of lens -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-07T10:45:47Z [Term] @@ -11574,7 +11715,7 @@ is_a: CL:0000057 ! fibroblast is_a: CL:0002092 ! bone marrow cell intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002371 ! bone marrow -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-07T02:25:18Z [Term] @@ -11586,7 +11727,7 @@ is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: bearer_of PATO:0002505 ! nucleated relationship: bearer_of PATO:0002505 ! nucleated -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-07T03:32:33Z [Term] @@ -11599,9 +11740,9 @@ xref: FMA:70611 is_a: CL:0000358 {is_inferred="true"} ! sphincter associated smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0001607 ! sphincter pupillae +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000133 ! neurectodermal cell relationship: part_of UBERON:0001607 ! sphincter pupillae -created_by: tmeehan creation_date: 2010-09-08T08:53:42Z [Term] @@ -11616,8 +11757,8 @@ is_a: CL:0000037 {is_inferred="true"} ! hematopoietic stem cell is_a: CL:0000080 ! circulating cell intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: part_of UBERON:0000178 ! blood +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000178 ! blood -created_by: tmeehan creation_date: 2010-09-07T03:57:09Z [Term] @@ -11627,8 +11768,8 @@ def: "An epithelial cell of the musculomembranous digestive tube extending from is_a: CL:0002076 ! endo-epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001555 ! digestive tract +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001555 ! digestive tract -created_by: tmeehan creation_date: 2010-09-08T09:26:53Z [Term] @@ -11640,8 +11781,8 @@ xref: FMA:63071 is_a: CL:0002251 {is_inferred="true"} ! epithelial cell of alimentary canal intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001043 ! esophagus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001043 ! esophagus -created_by: tmeehan creation_date: 2010-09-08T09:28:20Z [Term] @@ -11655,8 +11796,8 @@ xref: FMA:256157 is_a: CL:0002563 {is_inferred="true"} ! intestinal epithelial cell intersection_of: CL:0002563 ! intestinal epithelial cell intersection_of: part_of UBERON:0000059 ! large intestine +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000059 ! large intestine -created_by: tmeehan creation_date: 2010-09-08T09:28:22Z [Term] @@ -11668,22 +11809,24 @@ xref: FMA:256159 is_a: CL:0002563 {is_inferred="true"} ! intestinal epithelial cell intersection_of: CL:0002563 ! intestinal epithelial cell intersection_of: part_of UBERON:0002108 ! small intestine +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002108 ! small intestine -created_by: tmeehan creation_date: 2010-09-08T09:41:46Z [Term] id: CL:0002255 name: stromal cell of endometrium def: "Connective tissue cells of the endometrium, these cells are fibroblastic in appearance. During decidualization they tranform into decidual (stromal) cells, swellling up and adopt an epithelial cell-like appearance due to the accumulation of glycogen and lipid droplets." [PMID:11331626, PMID:30013421, Wiki:Decidualization&oldid=908981933#Endometrial_stromal_cells_(ESCs)] +subset: human_reference_atlas synonym: "endometrial stromal cell" EXACT [] xref: CALOHA:TS-1266 xref: FMA:86490 is_a: CL:0000499 {is_inferred="true"} ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0001295 ! endometrium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001295 ! endometrium -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-08T09:50:04Z [Term] @@ -11693,7 +11836,7 @@ alt_id: CL:1000446 def: "An endothelial cell found in the mucosa associated with the facial skeleton." [GOC:tfm, ISBN:0618947256] xref: FMA:70627 is_a: CL:0002076 ! endo-epithelial cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-14T10:40:12Z [Term] @@ -11701,12 +11844,14 @@ id: CL:0002262 name: endothelial cell of sinusoid alt_id: CL:1000403 def: "An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver." [GOC:tfm, ISBN:0618947256] +subset: human_reference_atlas xref: FMA:63134 is_a: CL:0000115 ! endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0003909 ! sinusoid +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0003909 ! sinusoid -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-14T10:57:26Z [Term] @@ -11718,7 +11863,7 @@ is_a: CL:0002067 ! type A enteroendocrine cell is_a: CL:0002659 ! glandular cell of stomach intersection_of: CL:0002067 ! type A enteroendocrine cell intersection_of: part_of UBERON:0000945 ! stomach -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-10T10:54:42Z [Term] @@ -11733,7 +11878,7 @@ is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0009042 ! enteroendocrine cell of colon intersection_of: CL:0000502 ! type D enteroendocrine cell intersection_of: part_of UBERON:0001155 ! colon -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-10T11:37:35Z [Term] @@ -11748,7 +11893,7 @@ is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0009006 ! enteroendocrine cell of small intestine intersection_of: CL:0000502 ! type D enteroendocrine cell intersection_of: part_of UBERON:0002108 ! small intestine -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-10T01:34:22Z [Term] @@ -11763,7 +11908,7 @@ is_a: CL:0000502 ! type D enteroendocrine cell is_a: CL:0002659 ! glandular cell of stomach intersection_of: CL:0000502 ! type D enteroendocrine cell intersection_of: part_of UBERON:0000945 ! stomach -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-10T01:36:03Z [Term] @@ -11771,6 +11916,7 @@ id: CL:0002275 name: pancreatic PP cell def: "A PP cell located in the islets of the pancreas." [GOC:tfm] comment: The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell. +subset: human_reference_atlas synonym: "pancreatic polypeptide-secreting cell" EXACT [] synonym: "PP cell of pancreatic islet" EXACT [] synonym: "PP-cell of pancreatic islet" EXACT [] @@ -11783,8 +11929,9 @@ is_a: CL:0008024 ! pancreatic endocrine cell intersection_of: CL:0000696 ! PP cell intersection_of: part_of UBERON:0000006 ! islet of Langerhans intersection_of: part_of UBERON:0001264 ! pancreas +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000006 ! islet of Langerhans -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-10T03:30:31Z [Term] @@ -11796,8 +11943,8 @@ xref: FMA:70657 is_a: CL:0002159 ! general ecto-epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0002419 ! skin gland +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002419 ! skin gland -created_by: tmeehan creation_date: 2010-09-14T12:00:07Z [Term] @@ -11811,8 +11958,8 @@ is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000548 ! animal cell intersection_of: part_of UBERON:0001016 ! nervous system +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001016 ! nervous system -created_by: tmeehan creation_date: 2010-09-15T01:34:57Z [Term] @@ -11828,8 +11975,8 @@ is_a: CL:0000548 ! animal cell is_a: CL:0002371 {is_inferred="true"} ! somatic cell intersection_of: CL:0002371 ! somatic cell intersection_of: part_of UBERON:0002384 ! connective tissue +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002384 ! connective tissue -created_by: tmeehan creation_date: 2010-09-15T03:01:54Z [Term] @@ -11841,7 +11988,7 @@ xref: FMA:82840 xref: FMA:82841 xref: WBbt:0007028 is_a: CL:0000548 ! animal cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-15T03:39:21Z [Term] @@ -11852,19 +11999,21 @@ xref: BTO:0002922 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0002185 ! bronchus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002031 ! epithelium of bronchus -created_by: tmeehan creation_date: 2010-09-20T02:00:00Z [Term] id: CL:0002332 name: ciliated cell of the bronchus def: "A ciliated cell of the bronchus." [GOC:tfm, PMID:18757316] +subset: human_reference_atlas is_a: CL:0002145 ! ciliated columnar cell of tracheobronchial tree is_a: CL:0002328 ! bronchial epithelial cell intersection_of: CL:0000064 ! ciliated cell intersection_of: part_of UBERON:0002185 ! bronchus -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-20T02:21:12Z [Term] @@ -11874,8 +12023,8 @@ def: "A fat cell derived from a neural crest cell." [GOC:tfm, PMID:17507398] is_a: CL:0000136 ! fat cell intersection_of: CL:0000136 ! fat cell intersection_of: develops_from CL:0000333 ! migratory neural crest cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000005 ! fibroblast neural crest derived -created_by: tmeehan creation_date: 2010-09-20T02:25:25Z [Term] @@ -11883,7 +12032,7 @@ id: CL:0002336 name: buccal mucosa cell def: "An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek." [GOC:tfm, MESH:D009061] is_a: CL:0002261 ! endothelial cell of viscerocranial mucosa -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-20T02:52:54Z [Term] @@ -11897,8 +12046,8 @@ xref: FMA:75621 is_a: CL:0010008 ! cardiac endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0002165 ! endocardium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002165 ! endocardium -created_by: tmeehan creation_date: 2010-09-21T04:33:05Z [Term] @@ -11908,7 +12057,7 @@ def: "A progenitor cell that is able to differentiate into the pancreas alpha, b synonym: "pancreatic endocrine progenitor" EXACT [] synonym: "pancreatic islet progenitor cell" EXACT [] is_a: CL:0011026 ! progenitor cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-21T04:41:06Z [Term] @@ -11918,8 +12067,8 @@ def: "A hematopoietic stem cell that exists during embryogenesis." [GOC:tfm, ISB is_a: CL:0000037 ! hematopoietic stem cell intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: part_of UBERON:0000922 ! embryo +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000922 ! embryo -created_by: tmeehan creation_date: 2010-09-22T09:05:13Z [Term] @@ -11929,21 +12078,23 @@ def: "A hematopoietic stem cell of the placenta. This cell type is first observe is_a: CL:0002352 ! gestational hematopoietic stem cell intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: part_of UBERON:0001987 ! placenta +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001987 ! placenta -created_by: tmeehan creation_date: 2010-09-22T10:30:02Z [Term] id: CL:0002363 name: keratocyte def: "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate." [GOC:tfm, ISBN:978-0-7020-2958-5] +subset: human_reference_atlas synonym: "corneal fibroblast" EXACT [] synonym: "corneal keratocyte" EXACT [] is_a: CL:0000005 ! fibroblast neural crest derived intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001777 ! substantia propria of cornea +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001777 ! substantia propria of cornea -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2010-09-22T01:57:40Z [Term] @@ -11955,8 +12106,8 @@ xref: BTO:0004533 is_a: CL:0002076 {is_inferred="true"} ! endo-epithelial cell intersection_of: CL:0002076 ! endo-epithelial cell intersection_of: part_of UBERON:0000065 ! respiratory tract +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000065 ! respiratory tract -created_by: tmeehan creation_date: 2010-09-23T04:38:49Z [Term] @@ -11968,7 +12119,7 @@ xref: BTO:0001268 xref: FMA:72300 xref: WBbt:0008378 is_a: CL:0000003 ! native cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-24T09:44:42Z [Term] @@ -11986,7 +12137,7 @@ intersection_of: bearer_of PATO:0001908 ! multinucleate intersection_of: bearer_of PATO:0002478 ! transversely striated intersection_of: has_part GO:0030017 ! sarcomere relationship: bearer_of PATO:0002478 ! transversely striated -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-24T01:13:01Z [Term] @@ -11996,8 +12147,8 @@ def: "A giioblast cell that develops from a migratory neural crest cell. The SCP synonym: "Schwann cell precursor cell" EXACT [] is_a: CL:0000030 ! glioblast is_a: CL:0011026 ! progenitor cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000333 ! migratory neural crest cell -created_by: tmeehan creation_date: 2010-09-24T02:06:10Z [Term] @@ -12007,8 +12158,8 @@ def: "A glial cell that develops from a Schwann cell precursor. The immature Sch synonym: "Schwann cell" BROAD [] xref: ZFA:0001725 is_a: CL:0002573 ! Schwann cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0002375 ! Schwann cell precursor -created_by: tmeehan creation_date: 2010-09-24T02:10:31Z [Term] @@ -12019,7 +12170,7 @@ is_a: CL:0000558 {is_inferred="true"} ! reticulocyte is_a: CL:0002242 ! nucleate cell intersection_of: CL:0000558 ! reticulocyte intersection_of: bearer_of PATO:0002505 ! nucleated -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-10-15T09:24:05Z [Term] @@ -12033,8 +12184,8 @@ is_a: CL:0000558 {is_inferred="true"} ! reticulocyte intersection_of: CL:0000558 ! reticulocyte intersection_of: bearer_of PATO:0001405 ! anucleate intersection_of: has_part GO:0005840 ! ribosome +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: has_part GO:0005840 ! ribosome -created_by: tmeehan creation_date: 2010-10-15T09:24:08Z [Term] @@ -12045,12 +12196,12 @@ comment: This cell type can be purified from optic nerves and other regions of t synonym: "O-2A/OPC" BROAD [PMID:24133281] synonym: "O2A/OPC" BROAD [PMID:11756508] synonym: "oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell" BROAD [PMID:2253328] -synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {http://purl.org/dc/terms/contributor="http://orcid.org/0000-0002-0819-0473"} +synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} xref: MESH:D000073637 is_a: CL:0011026 ! progenitor cell +relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) -property_value: dc-contributor http://orcid.org/0000-0002-1773-2692 xsd:string -created_by: tmeehan creation_date: 2010-11-10T02:51:34Z [Term] @@ -12063,9 +12214,9 @@ is_a: CL:0002465 {is_inferred="true"} ! CD11b-positive dendritic cell intersection_of: CL:0002465 ! CD11b-positive dendritic cell intersection_of: lacks_plasma_membrane_part PR:000001004 ! CD4 molecule intersection_of: lacks_plasma_membrane_part PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: lacks_plasma_membrane_part PR:000001004 ! CD4 molecule relationship: lacks_plasma_membrane_part PR:000001084 ! T-cell surface glycoprotein CD8 alpha chain -created_by: tmeehan creation_date: 2010-11-22T01:10:28Z [Term] @@ -12075,8 +12226,8 @@ def: "A conventional dendritic cell that expresses CD11b (ITGAM)." [GOC:tfm, htt is_a: CL:0000990 {is_inferred="true"} ! conventional dendritic cell intersection_of: CL:0000990 ! conventional dendritic cell intersection_of: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: RO:0002104 PR:000001012 ! has plasma membrane part integrin alpha-M -created_by: tmeehan creation_date: 2010-11-23T01:50:05Z [Term] @@ -12086,8 +12237,8 @@ def: "A melanocyte that produces pigment in the dermis." [GOC:cjm, GOC:tfm, MP:0 is_a: CL:1000458 ! melanocyte of skin intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0002067 ! dermis +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002067 ! dermis -created_by: tmeehan creation_date: 2010-12-03T03:17:05Z [Term] @@ -12098,8 +12249,8 @@ comment: The text defintion reference to the MP term appears to reference an epi is_a: CL:0000148 {is_inferred="true"} ! melanocyte intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0000483 ! epithelium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000483 ! epithelium -created_by: tmeehan creation_date: 2010-12-03T03:17:14Z [Term] @@ -12109,8 +12260,8 @@ def: "A melanocyte of the retina. This cell type is distinct from pigmented reti is_a: CL:0000148 {is_inferred="true"} ! melanocyte intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0000966 ! retina +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000966 ! retina -created_by: tmeehan creation_date: 2010-12-03T03:25:32Z [Term] @@ -12128,8 +12279,8 @@ is_a: CL:0000548 ! animal cell is_a: CL:0002371 {is_inferred="true"} ! somatic cell intersection_of: CL:0002371 ! somatic cell intersection_of: part_of UBERON:0007100 ! primary circulatory organ +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0007100 ! primary circulatory organ -created_by: tmeehan creation_date: 2010-12-07T09:37:22Z [Term] @@ -12142,8 +12293,8 @@ is_a: CL:0000630 ! supporting cell is_a: CL:0002320 ! connective tissue cell intersection_of: CL:0002320 ! connective tissue cell intersection_of: part_of UBERON:0005742 ! adventitia +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0005742 ! adventitia -created_by: tmeehan creation_date: 2010-12-07T04:03:56Z [Term] @@ -12154,20 +12305,22 @@ synonym: "intestinal smooth muscle cell" EXACT [] is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0000160 ! intestine +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000160 ! intestine -created_by: tmeehan creation_date: 2011-01-17T03:39:38Z [Term] id: CL:0002521 name: subcutaneous fat cell def: "A fat cell that is part of subcutaneous adipose tissue." [GOC:tfm] +subset: human_reference_atlas synonym: "subcutaneous adipocyte" EXACT [] is_a: CL:0000136 {is_inferred="true"} ! fat cell intersection_of: CL:0000136 ! fat cell intersection_of: part_of UBERON:0002190 ! subcutaneous adipose tissue +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002190 ! subcutaneous adipose tissue -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-02-21T02:51:22Z [Term] @@ -12178,8 +12331,8 @@ synonym: "small bile duct cholangiocyte" EXACT [PMID:23720296] is_a: CL:1000488 {is_inferred="true"} ! cholangiocyte intersection_of: CL:1000488 ! cholangiocyte intersection_of: part_of UBERON:0004823 ! intrahepatic bile duct epithelium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0004823 ! intrahepatic bile duct epithelium -created_by: tmeehan creation_date: 2011-02-28T01:20:20Z [Term] @@ -12190,8 +12343,8 @@ xref: BTO:0004577 is_a: CL:0019018 ! blood vessel smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0004178 ! aorta smooth muscle tissue +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0004178 ! aorta smooth muscle tissue -created_by: tmeehan creation_date: 2011-02-28T01:42:12Z [Term] @@ -12202,7 +12355,7 @@ is_a: CL:0000134 ! mesenchymal stem cell is_a: CL:0002092 ! bone marrow cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0002371 ! bone marrow -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-02-28T01:47:47Z [Term] @@ -12212,8 +12365,8 @@ def: "A mesenchymal stem cell of the chorionic membrane." [GOC:tfm] is_a: CL:0000134 ! mesenchymal stem cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0003124 ! chorion membrane +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0003124 ! chorion membrane -created_by: tmeehan creation_date: 2011-02-28T03:04:35Z [Term] @@ -12221,6 +12374,7 @@ id: CL:0002543 name: vein endothelial cell alt_id: CL:1000393 def: "An endothelial cell that is part of the vein." [GOC:tfm] +subset: human_reference_atlas synonym: "endothelial cell of vein" EXACT [] synonym: "venous endothelial cell" EXACT [] xref: FMA:62104 @@ -12228,8 +12382,9 @@ xref: KUPO:0001099 is_a: CL:0000071 {is_inferred="true"} ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0001638 ! vein +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001638 ! vein -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-02-28T03:48:11Z [Term] @@ -12239,7 +12394,7 @@ def: "An endothelial progenitor cell that participates in angiogenesis during de comment: See CL:0002619. is_a: CL:0000222 ! mesodermal cell is_a: CL:0002371 ! somatic cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-02-28T04:20:39Z [Term] @@ -12249,8 +12404,8 @@ def: "A fibroblast of the aortic adventitia." [GOC:tfm] is_a: CL:1000306 {is_inferred="true"} ! fibroblast of tunica adventitia of artery intersection_of: CL:1000306 ! fibroblast of tunica adventitia of artery intersection_of: part_of UBERON:0004664 ! aorta tunica adventitia +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0004664 ! aorta tunica adventitia -created_by: tmeehan creation_date: 2011-02-28T04:43:41Z [Term] @@ -12262,8 +12417,8 @@ is_a: CL:0000057 {is_inferred="true"} ! fibroblast is_a: CL:0002494 {is_inferred="true"} ! cardiocyte intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0000948 ! heart +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000948 ! heart -created_by: tmeehan creation_date: 2011-02-28T04:57:44Z [Term] @@ -12272,8 +12427,8 @@ name: fibroblast of dermis is_a: CL:0002620 {is_inferred="true"} ! skin fibroblast intersection_of: CL:0002620 ! skin fibroblast intersection_of: part_of UBERON:0002067 ! dermis +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002067 ! dermis -created_by: tmeehan creation_date: 2011-02-28T05:05:33Z [Term] @@ -12285,8 +12440,8 @@ xref: CALOHA:TS-0575 is_a: CL:0000057 {is_inferred="true"} ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002048 ! lung +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002048 ! lung -created_by: tmeehan creation_date: 2011-02-28T05:11:03Z [Term] @@ -12296,8 +12451,8 @@ def: "A fibroblast of pulmonary artery." [GOC:tfm] is_a: CL:0000057 {is_inferred="true"} ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002012 ! pulmonary artery +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002012 ! pulmonary artery -created_by: tmeehan creation_date: 2011-02-28T05:22:27Z [Term] @@ -12307,8 +12462,8 @@ def: "An epithelial cell of the intestine." [GOC:tfm] is_a: CL:0002251 ! epithelial cell of alimentary canal intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000160 ! intestine +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001277 ! intestinal epithelium -created_by: tmeehan creation_date: 2011-03-01T05:18:31Z [Term] @@ -12319,8 +12474,8 @@ synonym: "mesenchymal stem cell of adipose" EXACT [] is_a: CL:0000134 ! mesenchymal stem cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0001013 ! adipose tissue +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001013 ! adipose tissue -created_by: tmeehan creation_date: 2011-03-01T09:57:17Z [Term] @@ -12331,32 +12486,36 @@ is_a: CL:0000134 {is_inferred="true"} ! mesenchymal stem cell is_a: CL:0002195 ! hepatic stem cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0002107 ! liver -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-03-01T09:58:51Z [Term] id: CL:0002573 name: Schwann cell def: "A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function." [GOC:tfm] +subset: human_reference_atlas xref: BTO:0001220 xref: CALOHA:TS-0898 xref: MESH:D012583 is_a: CL:0000125 ! glial cell intersection_of: CL:0000125 ! glial cell intersection_of: part_of UBERON:0000010 ! peripheral nervous system +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000010 ! peripheral nervous system -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-02T01:19:27Z [Term] id: CL:0002574 name: stromal cell of pancreas def: "A stromal cell of the pancreas." [GOC:tfm] +subset: human_reference_atlas is_a: CL:0000499 {is_inferred="true"} ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0001264 ! pancreas +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001264 ! pancreas -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-02T02:40:41Z [Term] @@ -12367,20 +12526,22 @@ is_a: CL:0000066 ! epithelial cell is_a: CL:0000349 {is_inferred="true"} ! extraembryonic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001987 ! placenta +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001987 ! placenta -created_by: tmeehan creation_date: 2011-03-02T03:21:30Z [Term] id: CL:0002585 name: retinal blood vessel endothelial cell def: "A blood vessel endothelial cell that is part of the retina." [GOC:tfm] +subset: human_reference_atlas is_a: CL:0000071 {is_inferred="true"} ! blood vessel endothelial cell is_a: CL:0009004 ! retinal cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0000966 ! retina +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000966 ! retina -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T03:28:27Z [Term] @@ -12390,8 +12551,8 @@ def: "A smooth muscle cell of the bachiocephalic vasculature." [GOC:tfm] is_a: CL:0019018 ! blood vessel smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001529 ! brachiocephalic artery +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001529 ! brachiocephalic artery -created_by: tmeehan creation_date: 2011-03-06T05:00:58Z [Term] @@ -12402,20 +12563,22 @@ is_a: CL:0000359 {is_inferred="true"} ! vascular associated smooth muscle cell is_a: CL:0002319 ! neural cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0000955 ! brain +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000955 ! brain -created_by: tmeehan creation_date: 2011-03-06T05:01:20Z [Term] id: CL:0002591 name: smooth muscle cell of the pulmonary artery def: "A smooth muscle of the pulmonary artery." [GOC:tfm] +subset: human_reference_atlas xref: BTO:0003336 is_a: CL:0019018 ! blood vessel smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0002012 ! pulmonary artery +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002012 ! pulmonary artery -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T05:01:28Z [Term] @@ -12425,8 +12588,8 @@ def: "A smooth muscle cell of the subclavian artery." [GOC:tfm] is_a: CL:0019018 ! blood vessel smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0001533 ! subclavian artery +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001533 ! subclavian artery -created_by: tmeehan creation_date: 2011-03-06T05:01:52Z [Term] @@ -12436,19 +12599,21 @@ def: "Smooth muscle cell of the carotid artery." [GOC:tfm] is_a: CL:0019018 ! blood vessel smooth muscle cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0005396 ! carotid artery segment +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0005396 ! carotid artery segment -created_by: tmeehan creation_date: 2011-03-06T05:01:56Z [Term] id: CL:0002598 name: bronchial smooth muscle cell +subset: human_reference_atlas xref: BTO:0004402 is_a: CL:0019019 ! tracheobronchial smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0002185 ! bronchus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002185 ! bronchus -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-06T05:46:39Z [Term] @@ -12458,8 +12623,8 @@ def: "A smooth muscle cell of the esophagus." [GOC:tfm] is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0001043 ! esophagus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001043 ! esophagus -created_by: tmeehan creation_date: 2011-03-06T05:48:17Z [Term] @@ -12469,8 +12634,8 @@ def: "A smooth muscle cell of the trachea." [GOC:tfm] is_a: CL:0019019 ! tracheobronchial smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0003126 ! trachea +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0003126 ! trachea -created_by: tmeehan creation_date: 2011-03-06T05:50:28Z [Term] @@ -12480,8 +12645,8 @@ def: "A smooth muscle cell of the uterus." [GOC:tfm] is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0000995 ! uterus +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000995 ! uterus -created_by: tmeehan creation_date: 2011-03-06T05:53:28Z [Term] @@ -12492,8 +12657,8 @@ is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: RO:0002100 UBERON:0004684 ! has soma location raphe nuclei +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: RO:0002100 UBERON:0004684 ! has soma location raphe nuclei -created_by: tmeehan creation_date: 2011-03-06T07:42:06Z [Term] @@ -12504,21 +12669,23 @@ is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: RO:0002100 UBERON:0002257 ! has soma location ventral horn of spinal cord +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: RO:0002100 UBERON:0002257 ! has soma location ventral horn of spinal cord -created_by: tmeehan creation_date: 2011-03-06T07:46:03Z [Term] id: CL:0002620 name: skin fibroblast def: "A fibroblast of skin." [GOC:tfm] +subset: human_reference_atlas xref: BTO:0001255 xref: CALOHA:TS-0935 is_a: CL:0000057 {is_inferred="true"} ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002097 ! skin of body +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002097 ! skin of body -created_by: tmeehan +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2011-03-14T12:31:49Z [Term] @@ -12527,8 +12694,8 @@ name: epithelial cell of lower respiratory tract is_a: CL:0002368 {is_inferred="true"} ! respiratory epithelial cell intersection_of: CL:0002368 ! respiratory epithelial cell intersection_of: part_of UBERON:0001558 ! lower respiratory tract +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001558 ! lower respiratory tract -created_by: tmeehan creation_date: 2011-06-21T12:29:31Z [Term] @@ -12538,8 +12705,8 @@ def: "An epithelial cell of the anal column." [GOC:tfm] is_a: CL:0002253 ! epithelial cell of large intestine intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0009882 ! anal column +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0009882 ! anal column -created_by: tmeehan creation_date: 2011-07-08T12:11:38Z [Term] @@ -12551,7 +12718,7 @@ is_a: CL:0002634 ! epithelial cell of anal column is_a: CL:0009066 ! stratified squamous epithelial cell of anal canal intersection_of: CL:0000237 ! keratinizing barrier epithelial cell intersection_of: part_of UBERON:0000159 ! anal canal -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-07-08T02:08:40Z [Term] @@ -12562,8 +12729,8 @@ xref: FMA:86489 is_a: CL:1001591 ! oviduct glandular cell intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0001295 ! endometrium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0001295 ! endometrium -created_by: tmeehan creation_date: 2011-07-08T03:54:08Z [Term] @@ -12575,7 +12742,7 @@ is_a: CL:0000150 {is_inferred="true"} ! glandular epithelial cell is_a: CL:0002252 {is_inferred="true"} ! epithelial cell of esophagus intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0001043 ! esophagus -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-07-08T03:55:57Z [Term] @@ -12587,7 +12754,7 @@ is_a: CL:0000150 {is_inferred="true"} ! glandular epithelial cell is_a: CL:0002253 ! epithelial cell of large intestine intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0000059 ! large intestine -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-07-08T04:03:01Z [Term] @@ -12600,7 +12767,7 @@ is_a: CL:0000150 {is_inferred="true"} ! glandular epithelial cell is_a: CL:0002178 ! epithelial cell of stomach intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0000945 ! stomach -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-07-11T01:20:35Z [Term] @@ -12611,8 +12778,8 @@ xref: FMA:83389 is_a: CL:0002074 {is_inferred="true"} ! myocardial endocrine cell intersection_of: CL:0002074 ! myocardial endocrine cell intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0002081 ! cardiac atrium -created_by: tmeehan creation_date: 2011-07-11T02:45:39Z [Term] @@ -12623,7 +12790,7 @@ comment: Discrepancy in develops from origins prevents me from making the assert synonym: "cardiovascular progenitor cell" EXACT [PMID:17519333, PMID:19745164] synonym: "CPC" EXACT [PMID:19745164] is_a: CL:0000048 ! multi fate stem cell -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-07-11T03:15:38Z [Term] @@ -12631,8 +12798,8 @@ id: CL:0002672 name: retinal progenitor cell def: "A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells." [GOC:tfm, PMID:20959166, PMID:21148186] is_a: CL:0000048 ! multi fate stem cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000133 ! neurectodermal cell -created_by: tmeehan creation_date: 2011-08-16T02:38:01Z [Term] @@ -12642,8 +12809,8 @@ def: "A skeletal muscle cell that is part of the tongue." [GOC:tfm, PMID:1881685 is_a: CL:0008002 ! skeletal muscle fiber intersection_of: CL:0008002 ! skeletal muscle fiber intersection_of: part_of UBERON:0000378 ! tongue muscle +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0000378 ! tongue muscle -created_by: tmeehan creation_date: 2011-08-16T03:10:02Z [Term] @@ -12652,8 +12819,8 @@ name: neural crest derived neuroblast def: "A neuroblast derived from a neural crest cell." [GOC:tfm, PMID:17407019] is_a: CL:0000031 ! neuroblast (sensu Vertebrata) is_a: CL:0011026 ! progenitor cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: develops_from CL:0000333 ! migratory neural crest cell -created_by: tmeehan creation_date: 2011-08-22T09:24:15Z [Term] @@ -12664,7 +12831,7 @@ is_a: CL:0000696 {is_inferred="true"} ! PP cell is_a: CL:1001516 ! intestinal enteroendocrine cell intersection_of: CL:0000696 ! PP cell intersection_of: part_of UBERON:0000160 ! intestine -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2011-09-27T11:59:01Z [Term] @@ -12701,7 +12868,7 @@ def: "Cell that has the potential to form a skeletal cell type (e.g. cells in pe comment: Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts) synonym: "scleroblast" EXACT [GO_REF:0000034] is_a: CL:0000003 ! native cell -created_by: haendel +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 creation_date: 2012-06-15T02:51:27Z [Term] @@ -12709,9 +12876,9 @@ id: CL:0007004 name: premigratory neural crest cell def: "Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells." [UBERONREF:0000002] is_a: CL:0011012 ! neural crest cell +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: develops_from CL:0000133 ! neurectodermal cell relationship: part_of UBERON:0002342 ! neural crest -created_by: haendel creation_date: 2012-06-27T08:27:35Z [Term] @@ -12719,7 +12886,7 @@ id: CL:0007009 name: prechondroblast def: "Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells." [GO_REF:0000034] is_a: CL:0000055 ! non-terminally differentiated cell -created_by: haendel +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 creation_date: 2012-06-27T10:44:01Z [Term] @@ -12809,10 +12976,12 @@ relationship: part_of UBERON:0002062 ! endocardial cushion id: CL:0008024 name: pancreatic endocrine cell def: "An endocrine cell that is part of the pancreas." [GOC:dos] +subset: human_reference_atlas is_a: CL:0000163 ! endocrine cell intersection_of: CL:0000163 ! endocrine cell intersection_of: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0001264 ! pancreas +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0008028 @@ -12821,7 +12990,7 @@ is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of_part_of GO:0007601 ! visual perception relationship: capable_of_part_of GO:0007601 ! visual perception -created_by: dos +relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 creation_date: 2017-07-09T19:12:36Z [Term] @@ -12840,8 +13009,10 @@ id: CL:0008034 name: mural cell def: "Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation." [Wiki:Mural_cell&oldid=930603194] subset: added_for_HCA +subset: human_reference_atlas is_a: CL:0002371 ! somatic cell -created_by: dos +relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2020-02-29T17:33:55Z [Term] @@ -12851,8 +13022,8 @@ is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:0008034 ! mural cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of UBERON:0010523 ! microcirculatory vessel +relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 relationship: part_of UBERON:0010523 ! microcirculatory vessel -created_by: dos creation_date: 2020-02-29T17:37:00Z [Term] @@ -12894,20 +13065,22 @@ is_a: CL:1001516 ! intestinal enteroendocrine cell is_a: CL:1001598 ! small intestine glandular cell intersection_of: CL:0000164 ! enteroendocrine cell intersection_of: part_of UBERON:0002108 ! small intestine -created_by: http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009018 name: lymphocyte of large intestine lamina propria def: "A lymphocyte that resides in the lamina propria of the large intestine." [https://orcid.org/0000-0003-4183-8865] comment: This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. +subset: human_reference_atlas subset: location_grouping synonym: "lamina propria lymphocyte of large intestine" EXACT [] is_a: CL:0000542 ! lymphocyte intersection_of: CL:0000542 ! lymphocyte intersection_of: part_of UBERON:0011189 ! lamina propria of large intestine +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0011189 ! lamina propria of large intestine -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0009021 @@ -12917,8 +13090,8 @@ subset: location_grouping is_a: CL:0000499 ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0011189 ! lamina propria of large intestine +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0011189 ! lamina propria of large intestine -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009022 @@ -12928,8 +13101,8 @@ subset: location_grouping is_a: CL:0000499 ! stromal cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0001238 ! lamina propria of small intestine +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001238 ! lamina propria of small intestine -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009024 @@ -12940,7 +13113,7 @@ is_a: CL:0000077 ! mesothelial cell is_a: CL:0002254 ! epithelial cell of small intestine intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0002108 ! small intestine -created_by: http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009025 @@ -12952,7 +13125,7 @@ is_a: CL:0000077 ! mesothelial cell is_a: CL:0011108 ! colon epithelial cell intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0001155 ! colon -created_by: http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009038 @@ -12964,8 +13137,8 @@ synonym: "macrophage of colon" EXACT [] is_a: CL:0000235 ! macrophage intersection_of: CL:0000235 ! macrophage intersection_of: part_of UBERON:0001155 ! colon +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009040 @@ -12976,8 +13149,8 @@ synonym: "stromal cell of colon lamina propria" EXACT [] is_a: CL:0009021 ! stromal cell of lamina propria of large intestine intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0007177 ! lamina propria of mucosa of colon +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0007177 ! lamina propria of mucosa of colon -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009042 @@ -12989,7 +13162,7 @@ is_a: CL:1001516 ! intestinal enteroendocrine cell is_a: CL:1001588 ! colon glandular cell intersection_of: CL:0000164 ! enteroendocrine cell intersection_of: part_of UBERON:0001155 ! colon -created_by: http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009044 @@ -13006,8 +13179,8 @@ synonym: "small intestine lamina propria lymphocyte" EXACT [] is_a: CL:0000542 ! lymphocyte intersection_of: CL:0000542 ! lymphocyte intersection_of: part_of UBERON:0001238 ! lamina propria of small intestine +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001238 ! lamina propria of small intestine -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009048 @@ -13019,8 +13192,8 @@ synonym: "macrophage of anorectum" EXACT [] is_a: CL:0000235 ! macrophage intersection_of: CL:0000235 ! macrophage intersection_of: part_of UBERON:8410050 ! anorectum +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009051 @@ -13031,8 +13204,8 @@ subset: location_grouping is_a: CL:0000084 ! T cell intersection_of: CL:0000084 ! T cell intersection_of: part_of UBERON:8410050 ! anorectum +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009052 @@ -13043,8 +13216,8 @@ synonym: "anorectum smooth muscle cell" EXACT [] is_a: CL:1000279 ! smooth muscle cell of large intestine intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:8410050 ! anorectum +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009053 @@ -13055,8 +13228,8 @@ is_a: CL:0009021 ! stromal cell of lamina propria of large intestine intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0011189 ! lamina propria of large intestine intersection_of: part_of UBERON:8410050 ! anorectum +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009063 @@ -13068,8 +13241,8 @@ is_a: CL:0002658 ! glandular cell of the large intestine is_a: CL:1001516 ! intestinal enteroendocrine cell intersection_of: CL:0000164 ! enteroendocrine cell intersection_of: part_of UBERON:8410050 ! anorectum +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410050 ! anorectum -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009066 @@ -13082,8 +13255,8 @@ is_a: CL:0000240 ! stratified squamous epithelial cell is_a: CL:0002253 ! epithelial cell of large intestine intersection_of: CL:0000240 ! stratified squamous epithelial cell intersection_of: part_of UBERON:0000159 ! anal canal +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000159 ! anal canal -created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: CL:0009084 @@ -13095,9 +13268,9 @@ xref: EFO:0010710 is_a: CL:0000066 ! epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0002451 ! endometrial gland +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002451 ! endometrial gland -property_value: http://purl.org/dc/elements/1.1/date 2021-11-30T16:13:30Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2021-11-30T16:13:30Z xsd:dateTime [Term] id: CL:0009092 @@ -13110,8 +13283,8 @@ is_a: CL:0000115 ! endothelial cell is_a: CL:0002577 ! placental epithelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001987 ! placenta -property_value: http://purl.org/dc/elements/1.1/date 2021-12-13T13:53:01Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2021-12-13T13:53:01Z xsd:dateTime [Term] id: CL:0009093 @@ -13123,9 +13296,9 @@ xref: EFO:0010709 is_a: CL:0000192 ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0001987 ! placenta +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001987 ! placenta -property_value: http://purl.org/dc/elements/1.1/date 2021-12-13T13:56:42Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2021-12-13T13:56:42Z xsd:dateTime [Term] id: CL:0009094 @@ -13137,9 +13310,9 @@ xref: EFO:0010704 is_a: CL:0000115 ! endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001639 ! hepatic portal vein +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001639 ! hepatic portal vein -property_value: http://purl.org/dc/elements/1.1/date 2021-12-13T14:01:05Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2021-12-13T14:01:05Z xsd:dateTime [Term] id: CL:0009095 @@ -13151,9 +13324,9 @@ xref: EFO:0010711 is_a: CL:0000115 ! endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0000995 ! uterus +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0000995 ! uterus -property_value: http://purl.org/dc/elements/1.1/date 2021-12-13T14:39:25Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2021-12-13T14:39:25Z xsd:dateTime [Term] id: CL:0009097 @@ -13162,9 +13335,9 @@ def: "A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal is_a: CL:0008002 ! skeletal muscle fiber intersection_of: CL:0008002 ! skeletal muscle fiber intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage -property_value: http://purl.org/dc/elements/1.1/date 2022-02-21T15:39:10Z xsd:dateTime -created_by: http://orcid.org/0000-0002-2825-0621 +property_value: http://purl.org/dc/terms/date 2022-02-21T15:39:10Z xsd:dateTime [Term] id: CL:0009100 @@ -13174,9 +13347,9 @@ synonym: "portal fibroblast" BROAD [] is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001279 ! portal triad -relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001279 ! portal triad -property_value: http://purl.org/dc/elements/1.1/date 2022-03-17T12:00:44Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2022-03-17T12:00:44Z xsd:dateTime [Term] id: CL:0010001 @@ -13187,7 +13360,7 @@ is_a: CL:0000499 ! stromal cell is_a: CL:0002092 ! bone marrow cell intersection_of: CL:0000499 ! stromal cell intersection_of: part_of UBERON:0002371 ! bone marrow -created_by: GOC:cjm +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 [Term] id: CL:0010004 @@ -13198,7 +13371,7 @@ is_a: CL:0000842 ! mononuclear cell is_a: CL:1001610 ! bone marrow hematopoietic cell intersection_of: CL:0000842 ! mononuclear cell intersection_of: part_of UBERON:0002371 ! bone marrow -created_by: GOC:cjm +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 [Term] id: CL:0010006 @@ -13220,11 +13393,13 @@ relationship: part_of UBERON:0004146 ! His-Purkinje system [Term] id: CL:0010008 name: cardiac endothelial cell +subset: human_reference_atlas is_a: CL:0000115 ! endothelial cell is_a: CL:0002494 ! cardiocyte intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0010009 @@ -13247,7 +13422,7 @@ xref: FMA:84104 is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex property_value: seeAlso https://github.com/obophenotype/cell-ontology/issues/1359 xsd:string @@ -13325,8 +13500,8 @@ is_a: CL:0000077 ! mesothelial cell is_a: CL:0002494 ! cardiocyte intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0002348 ! epicardium +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0002348 ! epicardium -created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011021 @@ -13335,8 +13510,8 @@ def: "A fibroblast that is part of upper back skin." [] is_a: CL:0011022 ! fibroblast of skin of back intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0009015 ! upper back skin +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0009015 ! upper back skin -created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011022 @@ -13345,8 +13520,8 @@ def: "A fibroblast that is part of skin of back." [] is_a: CL:0002620 ! skin fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001068 ! skin of back +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0001068 ! skin of back -created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011026 @@ -13355,8 +13530,8 @@ def: "A precursor cell that has a tendency to differentiate into a specific type is_a: CL:0011115 ! precursor cell intersection_of: CL:0011115 ! precursor cell intersection_of: develops_from CL:0000034 ! stem cell +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: develops_from CL:0000034 ! stem cell -created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011027 @@ -13367,7 +13542,7 @@ is_a: CL:0000188 ! cell of skeletal muscle is_a: CL:1001609 ! muscle fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001134 ! skeletal muscle tissue -created_by: http://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011030 @@ -13379,7 +13554,7 @@ is_a: CL:2000008 ! microvascular endothelial cell is_a: CL:2000010 ! dermis blood vessel endothelial cell intersection_of: CL:2000008 ! microvascular endothelial cell intersection_of: part_of UBERON:0002067 ! dermis -created_by: http://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011101 @@ -13420,8 +13595,8 @@ is_a: CL:0000117 {is_inferred="true"} ! CNS neuron (sensu Vertebrata) is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: RO:0002100 UBERON:0001890 ! has soma location forebrain +relationship: dc-contributor https://orcid.org/0000-0002-3837-8864 relationship: RO:0002100 UBERON:0001890 ! has soma location forebrain -created_by: tberardini [Term] id: CL:0017500 @@ -13431,7 +13606,7 @@ is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: bearer_of PATO:0070046 ! neutrophillic relationship: bearer_of PATO:0070046 ! neutrophillic -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-05-25T01:36:34Z [Term] @@ -13443,7 +13618,7 @@ is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: bearer_of PATO:0002418 ! acidophilic relationship: bearer_of PATO:0002418 ! acidophilic -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2009-12-22T04:23:25Z [Term] @@ -13454,7 +13629,7 @@ is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: bearer_of PATO:0002094 ! basophilic relationship: bearer_of PATO:0002094 ! basophilic -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2009-12-22T04:24:54Z [Term] @@ -13465,7 +13640,7 @@ is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: bearer_of PATO:0070047 ! polychromatophilic relationship: bearer_of PATO:0070047 ! polychromatophilic -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2009-12-28T04:25:23Z [Term] @@ -13476,7 +13651,7 @@ is_a: GO:0005634 ! nucleus intersection_of: GO:0005634 ! nucleus intersection_of: bearer_of PATO:0000586 ! increased size relationship: bearer_of PATO:0000586 ! increased size -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2009-12-23T10:53:24Z [Term] @@ -13487,7 +13662,7 @@ is_a: GO:0005634 ! nucleus intersection_of: GO:0005634 ! nucleus intersection_of: bearer_of PATO:0001871 ! reniform relationship: bearer_of PATO:0001871 ! reniform -created_by: tmeehan +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2009-12-23T02:31:25Z [Term] @@ -13507,46 +13682,52 @@ synonym: "serous cell of tracheobronchial tree" EXACT [] is_a: CL:0000313 ! serous secreting cell intersection_of: CL:0000313 ! serous secreting cell intersection_of: part_of UBERON:0007196 ! tracheobronchial tree -relationship: dc-creator http://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0007196 ! tracheobronchial tree -property_value: http://purl.org/dc/elements/1.1/date 2020-05-07T16:03:27Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2020-05-07T16:03:27Z xsd:dateTime [Term] id: CL:0019002 name: tracheobronchial chondrocyte def: "Any chondrocyte that is part of the tracheobronchial tree." [] subset: added_for_HCA +subset: human_reference_atlas synonym: "chondrocyte of tracheobronchial tree" EXACT [] is_a: CL:0000138 ! chondrocyte intersection_of: CL:0000138 ! chondrocyte intersection_of: part_of UBERON:0007196 ! tracheobronchial tree -relationship: dc-creator http://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0007196 ! tracheobronchial tree -property_value: http://purl.org/dc/elements/1.1/date 2020-05-07T17:29:51Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2020-05-07T17:29:51Z xsd:dateTime +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0019018 name: blood vessel smooth muscle cell def: "A smooth muscle cell that is part of any blood vessel." [PMID:9108778] +subset: human_reference_atlas synonym: "smooth muscle cell of blood vessel" EXACT [] is_a: CL:0000359 ! vascular associated smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0001981 ! blood vessel -relationship: dc-creator http://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0001981 ! blood vessel -property_value: http://purl.org/dc/elements/1.1/date 2020-07-21T12:42:48Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2020-07-21T12:42:48Z xsd:dateTime +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0019019 name: tracheobronchial smooth muscle cell def: "A smooth muscle cell that is part of the tracheobronchial tree." [PMID:10853867] +subset: human_reference_atlas synonym: "smooth muscle cell of tracheobronchial tree" EXACT [] is_a: CL:0000192 ! smooth muscle cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0007196 ! tracheobronchial tree -relationship: dc-creator http://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0007196 ! tracheobronchial tree -property_value: http://purl.org/dc/elements/1.1/date 2020-07-21T12:50:22Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2020-07-21T12:50:22Z xsd:dateTime +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:0019020 @@ -13556,9 +13737,9 @@ synonym: "large bile duct cholangiocyte" EXACT [PMID:23720296] is_a: CL:1000488 ! cholangiocyte intersection_of: CL:1000488 ! cholangiocyte intersection_of: part_of UBERON:0004822 ! extrahepatic bile duct epithelium -relationship: dc-creator http://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0004822 ! extrahepatic bile duct epithelium -property_value: http://purl.org/dc/elements/1.1/date 2020-09-03T12:24:24Z xsd:dateTime +property_value: http://purl.org/dc/terms/date 2020-09-03T12:24:24Z xsd:dateTime [Term] id: CL:0019021 @@ -13571,8 +13752,8 @@ is_a: CL:1000398 ! endothelial cell of hepatic sinusoid intersection_of: CL:1000398 ! endothelial cell of hepatic sinusoid intersection_of: adjacent_to UBERON:0001279 ! portal triad relationship: adjacent_to UBERON:0001279 ! portal triad -relationship: dc-creator http://orcid.org/0000-0003-2034-601X -property_value: http://purl.org/dc/elements/1.1/date 2020-09-09T13:56:47Z xsd:dateTime +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +property_value: http://purl.org/dc/terms/date 2020-09-09T13:56:47Z xsd:dateTime [Term] id: CL:0019022 @@ -13585,8 +13766,8 @@ is_a: CL:1000398 ! endothelial cell of hepatic sinusoid intersection_of: CL:1000398 ! endothelial cell of hepatic sinusoid intersection_of: adjacent_to UBERON:0006841 ! central vein of liver relationship: adjacent_to UBERON:0006841 ! central vein of liver -relationship: dc-creator http://orcid.org/0000-0003-2034-601X -property_value: http://purl.org/dc/elements/1.1/date 2020-09-10T12:38:29Z xsd:dateTime +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +property_value: http://purl.org/dc/terms/date 2020-09-10T12:38:29Z xsd:dateTime [Term] id: CL:1000042 @@ -13608,20 +13789,24 @@ intersection_of: part_of UBERON:0000945 ! stomach [Term] id: CL:1000223 name: lung neuroendocrine cell +subset: human_reference_atlas is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0000165 ! neuroendocrine cell is_a: CL:1000272 ! lung secretory cell intersection_of: CL:0000165 ! neuroendocrine cell intersection_of: part_of UBERON:0002048 ! lung +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000271 name: lung ciliated cell +subset: human_reference_atlas is_a: BFO:0000004 ! independent continuant is_a: CL:0000064 ! ciliated cell intersection_of: CL:0000064 ! ciliated cell intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000272 @@ -13663,12 +13848,14 @@ relationship: part_of UBERON:0002114 ! duodenum id: CL:1000279 name: smooth muscle cell of large intestine def: "A smooth muscle cell that is part of the large intestine." [GOC:tfm] +subset: human_reference_atlas synonym: "non-striated muscle fiber of large intestine" EXACT [FMA:15653] xref: FMA:15653 is_a: CL:0002504 {is_inferred="true"} ! enteric smooth muscle cell intersection_of: CL:0002504 ! enteric smooth muscle cell intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000280 @@ -13752,12 +13939,14 @@ relationship: part_of UBERON:0007846 ! dense regular connective tissue id: CL:1000309 name: epicardial adipocyte def: "A fat cell that is part of the epicardial fat." [GOC:tfm] +subset: human_reference_atlas synonym: "adipocyte of epicardial fat" EXACT [FMA:261293] synonym: "epicardial fat cell" EXACT [FMA:261293] xref: FMA:261293 is_a: CL:0000136 ! fat cell is_a: CL:0002494 ! cardiocyte relationship: part_of UBERON:0002348 ! epicardium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000310 @@ -13861,6 +14050,7 @@ relationship: part_of UBERON:0002094 ! interventricular septum id: CL:1000398 name: endothelial cell of hepatic sinusoid def: "An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates." [GOC:tfm, PMID:3926620] +subset: human_reference_atlas synonym: "endotheliocyte of hepatic sinusoid" EXACT [FMA:62911] synonym: "liver sinusoidal endothelial cell" EXACT [PMID:30348985] synonym: "LSEC" EXACT [PMID:30348985] @@ -13870,6 +14060,7 @@ is_a: CL:0002262 ! endothelial cell of sinusoid intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001281 ! hepatic sinusoid relationship: part_of UBERON:0001281 ! hepatic sinusoid +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000409 @@ -13907,18 +14098,21 @@ relationship: part_of UBERON:0002352 ! atrioventricular node id: CL:1000412 name: endothelial cell of arteriole def: "An endothelial cell that is part of the arteriole." [GOC:tfm] +subset: human_reference_atlas xref: FMA:67760 xref: KUPO:0001097 is_a: CL:0000071 {is_inferred="true"} ! blood vessel endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0001980 ! arteriole +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000413 name: endothelial cell of artery alt_id: CL:0002542 def: "A blood vessel endothelial cell that is part of an arterial endothelium." [GOC:tfm] +subset: human_reference_atlas synonym: "arterial endothelial cell" EXACT [] xref: BTO:0004758 xref: FMA:67761 @@ -13927,27 +14121,30 @@ is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0001917 ! endothelium of artery +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000414 name: endothelial cell of venule def: "An endothelial cell that is part of the venule." [GOC:tfm] +subset: human_reference_atlas xref: FMA:67762 is_a: CL:0002139 {is_inferred="true"} ! endothelial cell of vascular tree intersection_of: CL:0002139 ! endothelial cell of vascular tree intersection_of: part_of UBERON:0001979 ! venule relationship: part_of UBERON:0001979 ! venule +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000415 -name: epithelial cell of gall bladder +name: epithelial cell of gallbladder def: "An epithelial cell that is part of the gallbladder." [GOC:tfm] xref: FMA:67780 is_a: CL:0000066 {is_inferred="true"} ! epithelial cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 ! gallbladder [Term] id: CL:1000428 @@ -14006,16 +14203,19 @@ relationship: part_of UBERON:0001366 ! parietal peritoneum id: CL:1000457 name: mesothelial cell of visceral peritoneum def: "A mesothelial cell that is part of the visceral peritoneum." [GOC:tfm] +subset: human_reference_atlas xref: FMA:72143 is_a: CL:1000490 ! mesothelial cell of peritoneum intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0001178 ! visceral peritoneum relationship: part_of UBERON:0001178 ! visceral peritoneum +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000458 name: melanocyte of skin def: "A melanocyte that is part of the skin of body." [GOC:tfm] +subset: human_reference_atlas synonym: "skin melanocyte" EXACT [FMA:72144] xref: CALOHA:TS-2374 xref: FMA:72144 @@ -14023,6 +14223,7 @@ is_a: CL:0000148 {is_inferred="true"} ! melanocyte intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0002097 ! skin of body relationship: part_of UBERON:0002097 ! skin of body +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1000478 @@ -14106,23 +14307,27 @@ relationship: part_of UBERON:0002400 ! parietal pleura id: CL:1000493 name: mesothelial cell of visceral pleura def: "A mesothelial cell that is part of the visceral pleura." [GOC:tfm] +subset: human_reference_atlas xref: FMA:86739 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:1000491 ! mesothelial cell of pleura intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of UBERON:0002401 ! visceral pleura relationship: part_of UBERON:0002401 ! visceral pleura +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1001433 name: epithelial cell of exocrine pancreas def: "An epithelial cell of the exocrine pancreas." [GOC:tfm] +subset: human_reference_atlas synonym: "exocrine pancreas cell" EXACT [] xref: FMA:70986 is_a: CL:0000083 ! epithelial cell of pancreas intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000017 ! exocrine pancreas relationship: part_of UBERON:0000017 ! exocrine pancreas +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1001516 @@ -14147,12 +14352,14 @@ relationship: part_of UBERON:0000102 ! lung vasculature [Term] id: CL:1001568 name: pulmonary artery endothelial cell +subset: human_reference_atlas synonym: "PAEC cell" RELATED [BTO:0001141] xref: BTO:0001141 is_a: CL:1000413 ! endothelial cell of artery intersection_of: CL:0002139 ! endothelial cell of vascular tree intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0005317 ! pulmonary artery endothelium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1001572 @@ -14232,16 +14439,16 @@ relationship: part_of UBERON:0004804 ! oviduct epithelium [Term] id: CL:1001592 -name: gall bladder glandular cell -def: "Glandular cell of gall bladder epithelium." [NPX:PDR] +name: gallbladder glandular cell +def: "Glandular cell of gallbladder epithelium." [NPX:PDR] +synonym: "gall bladder glandular cell" EXACT [FMA:7202] synonym: "gall bladder glandular cells" RELATED [CALOHA:TS-1278] -synonym: "gallbladder glandular cell" RELATED [CALOHA:TS-1278] synonym: "gallbladder glandular cells" RELATED [CALOHA:TS-1278] xref: CALOHA:TS-1278 is_a: CL:0000150 ! glandular epithelial cell -is_a: CL:1000415 ! epithelial cell of gall bladder +is_a: CL:1000415 ! epithelial cell of gallbladder intersection_of: CL:0000150 ! glandular epithelial cell -intersection_of: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder relationship: part_of UBERON:0002029 ! epithelium of gall bladder [Term] @@ -14275,6 +14482,7 @@ relationship: part_of UBERON:0001902 ! epithelium of small intestine id: CL:1001599 name: pancreas exocrine glandular cell def: "Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts." [HPA:HPA, NPX:PDR] +subset: human_reference_atlas synonym: "exocrine pancreas glandular cell" RELATED [CALOHA:TS-1242] synonym: "pancreas exocrine glandular cells" RELATED [CALOHA:TS-1242] xref: BTO:0000028 @@ -14285,6 +14493,7 @@ is_a: CL:1001433 ! epithelial cell of exocrine pancreas intersection_of: CL:0000150 ! glandular epithelial cell intersection_of: part_of UBERON:0000017 ! exocrine pancreas relationship: part_of UBERON:0013697 ! exocrine pancreas epithelium +property_value: RO:0002175 NCBITaxon:9606 [Term] id: CL:1001602 @@ -14343,8 +14552,8 @@ is_a: CL:0002484 ! epithelial melanocyte is_a: CL:1000458 ! melanocyte of skin intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0001003 ! skin epidermis +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0001003 ! skin epidermis -created_by: TermGenie creation_date: 2014-02-03T23:03:09Z [Term] @@ -14355,8 +14564,8 @@ is_a: CL:0000080 ! circulating cell is_a: CL:0000842 ! mononuclear cell intersection_of: CL:0000842 ! mononuclear cell intersection_of: part_of UBERON:0000178 ! blood +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000178 ! blood -created_by: TermGenie creation_date: 2014-02-11T17:29:04Z [Term] @@ -14366,19 +14575,21 @@ def: "Any macroglial cell that is part of a brain." [GOC:TermGenie] is_a: CL:0000126 ! macroglial cell intersection_of: CL:0000126 ! macroglial cell intersection_of: part_of UBERON:0000955 ! brain +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000955 ! brain -created_by: TermGenie creation_date: 2014-03-28T21:35:27Z [Term] id: CL:2000008 name: microvascular endothelial cell def: "Any blood vessel endothelial cell that is part of a microvascular endothelium." [GOC:TermGenie] +subset: human_reference_atlas is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0008339 ! microvascular endothelium +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0008339 ! microvascular endothelium -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2014-06-04T15:07:42Z [Term] @@ -14388,8 +14599,8 @@ def: "Any blood vessel endothelial cell that is part of a dermis." [GOC:TermGeni is_a: CL:0000071 ! blood vessel endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of UBERON:0002067 ! dermis +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002067 ! dermis -created_by: TermGenie creation_date: 2014-06-04T15:12:06Z [Term] @@ -14399,8 +14610,8 @@ def: "Any skin fibroblast that is part of a skin of abdomen." [GOC:TermGenie] is_a: CL:0002620 ! skin fibroblast intersection_of: CL:0002620 ! skin fibroblast intersection_of: part_of UBERON:0001416 ! skin of abdomen +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0001416 ! skin of abdomen -created_by: TermGenie creation_date: 2014-06-04T15:18:16Z [Term] @@ -14411,7 +14622,7 @@ is_a: CL:1001567 ! lung endothelial cell is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:1001567 ! lung endothelial cell intersection_of: part_of UBERON:0008339 ! microvascular endothelium -created_by: TermGenie +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 creation_date: 2014-06-04T16:00:56Z [Term] @@ -14422,8 +14633,8 @@ xref: FBbt:00004211 is_a: CL:0000287 ! eye photoreceptor cell intersection_of: CL:0000210 ! photoreceptor cell intersection_of: part_of UBERON:0000018 ! compound eye +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000018 ! compound eye -created_by: TermGenie creation_date: 2014-06-24T23:16:45Z [Term] @@ -14434,8 +14645,8 @@ is_a: BFO:0000004 ! independent continuant is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: part_of UBERON:0000087 ! inner cell mass +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000087 ! inner cell mass -created_by: TermGenie creation_date: 2014-06-24T23:16:53Z [Term] @@ -14446,8 +14657,8 @@ is_a: BFO:0000004 ! independent continuant is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: part_of UBERON:0002099 ! cardiac septum +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002099 ! cardiac septum -created_by: TermGenie creation_date: 2014-06-24T23:17:07Z [Term] @@ -14457,8 +14668,8 @@ def: "Any oligodendrocyte that is part of a spinal cord." [GOC:TermGenie] is_a: CL:0000128 ! oligodendrocyte intersection_of: CL:0000128 ! oligodendrocyte intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002240 ! spinal cord -created_by: TermGenie creation_date: 2014-06-25T00:23:50Z [Term] @@ -14468,8 +14679,8 @@ def: "Any neuron that is part of a central nervous system." [GOC:TermGenie] is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron intersection_of: RO:0002100 UBERON:0001017 ! has soma location central nervous system +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: RO:0002100 UBERON:0001017 ! has soma location central nervous system -created_by: TermGenie creation_date: 2014-06-25T01:17:43Z [Term] @@ -14483,8 +14694,8 @@ xref: FMA:84664 is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron intersection_of: RO:0002100 UBERON:0000010 ! has soma location peripheral nervous system +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: RO:0002100 UBERON:0000010 ! has soma location peripheral nervous system -created_by: TermGenie creation_date: 2014-06-25T02:28:17Z [Term] @@ -14494,8 +14705,8 @@ def: "Any fibroblast that is part of a embryo." [GOC:TermGenie] is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0000922 ! embryo +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000922 ! embryo -created_by: TermGenie creation_date: 2014-07-09T00:12:00Z [Term] @@ -14506,8 +14717,8 @@ is_a: CL:0002319 ! neural cell is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:2000008 ! microvascular endothelial cell intersection_of: part_of UBERON:0000955 ! brain +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000955 ! brain -created_by: TermGenie creation_date: 2014-07-09T00:24:53Z [Term] @@ -14517,8 +14728,8 @@ def: "Any cardiac muscle cell that is part of a cardiac ventricle." [GOC:TermGen is_a: CL:0000746 ! cardiac muscle cell intersection_of: CL:0000746 ! cardiac muscle cell intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002082 ! cardiac ventricle -created_by: TermGenie creation_date: 2014-08-12T20:50:28Z [Term] @@ -14529,8 +14740,8 @@ is_a: CL:0000100 ! motor neuron is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000100 ! motor neuron intersection_of: RO:0002100 UBERON:0002298 ! has soma location brainstem +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: RO:0002100 UBERON:0002298 ! has soma location brainstem -created_by: TermGenie creation_date: 2014-10-02T23:52:53Z [Term] @@ -14540,8 +14751,8 @@ def: "Any fibroblast that is part of a spleen." [GOC:TermGenie] is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002106 ! spleen +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002106 ! spleen -created_by: TermGenie creation_date: 2014-10-06T18:58:47Z [Term] @@ -14549,11 +14760,13 @@ id: CL:2000053 name: splenic endothelial cell def: "Any endothelial cell that is part of a spleen." [GOC:TermGenie] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=5500 +subset: human_reference_atlas is_a: CL:0000115 ! endothelial cell intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of UBERON:0002106 ! spleen +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002106 ! spleen -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2014-10-06T19:06:04Z [Term] @@ -14565,8 +14778,8 @@ synonym: "hepatic dendritic cell" EXACT [] is_a: CL:0000451 ! dendritic cell intersection_of: CL:0000451 ! dendritic cell intersection_of: part_of UBERON:0002107 ! liver +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002107 ! liver -created_by: TermGenie creation_date: 2014-10-06T19:16:11Z [Term] @@ -14581,9 +14794,9 @@ xref: BTO:0006208 is_a: CL:0000351 ! trophoblast cell intersection_of: CL:0000351 ! trophoblast cell intersection_of: part_of UBERON:0010005 ! placental labyrinth villous +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0010005 ! placental labyrinth villous property_value: seeAlso http://www.sciencellonline.com/site/productInformation.php?keyword=7120 xsd:string -created_by: TermGenie creation_date: 2014-10-07T17:48:27Z [Term] @@ -14594,8 +14807,8 @@ comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7140 is_a: CL:0000134 ! mesenchymal stem cell intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0001987 ! placenta +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0001987 ! placenta -created_by: TermGenie creation_date: 2014-10-07T17:51:11Z [Term] @@ -14603,12 +14816,14 @@ id: CL:2000062 name: placental villus capillary endothelial cell def: "Any capillary endothelial cell that is part of a placenta." [GOC:TermGenie] comment: http://www.ncbi.nlm.nih.gov/books/NBK53245/ +subset: human_reference_atlas is_a: CL:0002144 ! capillary endothelial cell is_a: CL:0009092 ! endothelial cell of placenta intersection_of: CL:0002144 ! capillary endothelial cell intersection_of: part_of UBERON:0010005 ! placental labyrinth villous +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0010005 ! placental labyrinth villous -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2014-10-07T17:55:56Z [Term] @@ -14619,8 +14834,8 @@ comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7330 is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0000992 ! ovary +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000992 ! ovary -created_by: TermGenie creation_date: 2014-10-07T17:57:42Z [Term] @@ -14631,8 +14846,8 @@ comment: http://www.sciencellonline.com/site/productInformation.php?keyword=7310 is_a: CL:0000066 ! epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000992 ! ovary +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000992 ! ovary -created_by: TermGenie creation_date: 2014-10-07T17:59:13Z [Term] @@ -14640,11 +14855,13 @@ id: CL:2000066 name: cardiac ventricle fibroblast def: "Any fibroblast that is part of a cardiac ventricle." [GOC:TermGenie] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6310 +subset: human_reference_atlas is_a: CL:0002548 ! fibroblast of cardiac tissue intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002082 ! cardiac ventricle +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002082 ! cardiac ventricle -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2014-10-07T18:35:38Z [Term] @@ -14652,11 +14869,13 @@ id: CL:2000067 name: cardiac atrium fibroblast def: "Any fibroblast that is part of a cardiac atrium." [GOC:TermGenie] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6320 +subset: human_reference_atlas is_a: CL:0002548 ! fibroblast of cardiac tissue intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002081 ! cardiac atrium +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002081 ! cardiac atrium -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2014-10-07T18:36:54Z [Term] @@ -14667,8 +14886,8 @@ comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6430 is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0002407 ! pericardium +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002407 ! pericardium -created_by: TermGenie creation_date: 2014-10-07T18:38:06Z [Term] @@ -14678,9 +14897,9 @@ def: "Any fibroblast that is part of a gallbladder." [GOC:TermGenie] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=5430 is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder -created_by: TermGenie +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 +relationship: part_of UBERON:0002110 ! gallbladder creation_date: 2014-10-07T18:41:43Z [Term] @@ -14691,8 +14910,8 @@ comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6620 is_a: CL:0000057 ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001776 ! optic choroid +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0001776 ! optic choroid -created_by: TermGenie creation_date: 2014-10-07T18:50:43Z [Term] @@ -14704,19 +14923,20 @@ is_a: CL:0002320 ! connective tissue cell is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:2000008 ! microvascular endothelial cell intersection_of: part_of UBERON:0001013 ! adipose tissue +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0001013 ! adipose tissue -created_by: TermGenie creation_date: 2014-10-07T22:13:45Z [Term] id: CL:2000073 name: migratory cardiac neural crest cell def: "Any migratory neural crest cell that is part of a cardiac neural crest." [GOC:TermGenie] +synonym: "cardiac neural crest cell" EXACT [PMID:33060096] is_a: CL:0000333 ! migratory neural crest cell intersection_of: CL:0000333 ! migratory neural crest cell intersection_of: part_of UBERON:0000095 ! cardiac neural crest +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000095 ! cardiac neural crest -created_by: TermGenie creation_date: 2014-11-05T01:18:43Z [Term] @@ -14727,8 +14947,8 @@ comment: Splenocytes is a vague term that refers to any one of the different whi is_a: CL:0000738 ! leukocyte intersection_of: CL:0000738 ! leukocyte intersection_of: part_of UBERON:0002106 ! spleen +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002106 ! spleen -created_by: TermGenie creation_date: 2014-11-05T01:26:50Z [Term] @@ -14739,8 +14959,8 @@ synonym: "mesenchymal stem cell of abdominal adipose" EXACT [] is_a: CL:0002570 ! mesenchymal stem cell of adipose tissue intersection_of: CL:0002570 ! mesenchymal stem cell of adipose tissue intersection_of: part_of UBERON:0000916 ! abdomen +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0000916 ! abdomen -created_by: TermGenie creation_date: 2014-12-02T19:10:34Z [Term] @@ -14750,20 +14970,22 @@ def: "Any melanocyte of skin that is part of a skin of face." [GOC:TermGenie] is_a: CL:1000458 ! melanocyte of skin intersection_of: CL:1000458 ! melanocyte of skin intersection_of: part_of UBERON:1000021 ! skin of face +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:1000021 ! skin of face -created_by: TermGenie creation_date: 2014-12-02T19:10:40Z [Term] id: CL:2000091 name: endometrial microvascular endothelial cells def: "Any microvascular endothelial cell that is part of a endometrial blood vessel." [GOC:TermGenie] +subset: human_reference_atlas is_a: CL:0009095 ! endothelial cell of uterus is_a: CL:2000008 ! microvascular endothelial cell intersection_of: CL:2000008 ! microvascular endothelial cell intersection_of: part_of UBERON:0015172 ! endometrial blood vessel +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0015172 ! endometrial blood vessel -created_by: TermGenie +property_value: RO:0002175 NCBITaxon:9606 creation_date: 2015-03-31T21:02:36Z [Term] @@ -14773,8 +14995,8 @@ def: "Any fibroblast of lung that is part of a bronchus." [GOC:TermGenie] is_a: CL:0002553 ! fibroblast of lung intersection_of: CL:0002553 ! fibroblast of lung intersection_of: part_of UBERON:0002185 ! bronchus +relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0002185 ! bronchus -created_by: TermGenie creation_date: 2015-03-31T21:16:22Z [Term] @@ -14785,8 +15007,8 @@ is_a: CL:0000067 ! ciliated epithelial cell is_a: CL:0002252 ! epithelial cell of esophagus intersection_of: CL:0000067 ! ciliated epithelial cell intersection_of: part_of UBERON:0001976 ! epithelium of esophagus +relationship: dc-contributor https://www.wikidata.org/entity/Q97529981 relationship: part_of UBERON:0001976 ! epithelium of esophagus -created_by: CellBLAST creation_date: 2019-02-09T16:40:30Z [Term] @@ -14797,7 +15019,7 @@ is_a: CL:0000101 ! sensory neuron is_a: CL:2000032 ! peripheral nervous system neuron intersection_of: CL:2000032 ! peripheral nervous system neuron intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception -created_by: CellBLAST +relationship: dc-contributor https://www.wikidata.org/entity/Q97529981 creation_date: 2019-02-25T19:34:33Z [Term] @@ -14813,7 +15035,7 @@ intersection_of: CL:0000679 ! glutamatergic neuron intersection_of: bearer_of PATO:0070034 ! intratelencephalic projecting intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: bearer_of PATO:0070034 ! intratelencephalic projecting -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023009 @@ -14828,7 +15050,7 @@ intersection_of: CL:0000679 ! glutamatergic neuron intersection_of: bearer_of PATO:0070028 ! extratelencephalic projecting intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: bearer_of PATO:0070028 ! extratelencephalic projecting -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023012 @@ -14843,7 +15065,7 @@ intersection_of: CL:0000679 ! glutamatergic neuron intersection_of: bearer_of PATO:0070030 ! near projecting intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: bearer_of PATO:0070030 ! near projecting -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023013 @@ -14857,7 +15079,7 @@ intersection_of: CL:0000679 ! glutamatergic neuron intersection_of: bearer_of PATO:0070029 ! corticothalamic projecting intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex relationship: bearer_of PATO:0070029 ! corticothalamic projecting -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023066 @@ -14869,7 +15091,7 @@ is_a: CL:0000598 ! pyramidal neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: bearer_of PATO:0070016 ! horizontal pyramidal morphology relationship: bearer_of PATO:0070016 ! horizontal pyramidal morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023077 @@ -14881,7 +15103,7 @@ is_a: CL:0000099 ! interneuron intersection_of: CL:0000099 ! interneuron intersection_of: bearer_of PATO:0070012 ! bitufted cell morphology relationship: bearer_of PATO:0070012 ! bitufted cell morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023083 @@ -14894,7 +15116,7 @@ is_a: CL:0000099 ! interneuron intersection_of: CL:0000099 ! interneuron intersection_of: bearer_of PATO:0070011 ! chandelier cell morphology relationship: bearer_of PATO:0070011 ! chandelier cell morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023092 @@ -14906,7 +15128,7 @@ is_a: CL:0000598 ! pyramidal neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: bearer_of PATO:0070021 ! inverted pyramidal morphology relationship: bearer_of PATO:0070021 ! inverted pyramidal morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023093 @@ -14918,7 +15140,7 @@ is_a: CL:0000598 ! pyramidal neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: bearer_of PATO:0070020 ! stellate pyramidal morphology relationship: bearer_of PATO:0070020 ! stellate pyramidal morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023094 @@ -14930,7 +15152,7 @@ is_a: CL:0000598 ! pyramidal neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: bearer_of PATO:0070018 ! tufted pyramidal morphology relationship: bearer_of PATO:0070018 ! tufted pyramidal morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023095 @@ -14942,7 +15164,7 @@ is_a: CL:0000598 ! pyramidal neuron intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: bearer_of PATO:0070019 ! untufted pyramidal morphology relationship: bearer_of PATO:0070019 ! untufted pyramidal morphology -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023111 @@ -14952,7 +15174,7 @@ is_a: CL:0000598 ! pyramidal neuron is_a: CL:0010012 ! cerebral cortex neuron intersection_of: CL:0000598 ! pyramidal neuron intersection_of: RO:0002100 UBERON:0000956 ! has soma location cerebral cortex -relationship: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023154 @@ -14962,9 +15184,29 @@ def: "A glial cell that myelinates axonal processes." [DOI:10.1007/3-540-29623-9 is_a: CL:0000125 ! glial cell intersection_of: CL:0000125 ! glial cell intersection_of: has_part GO:0043209 ! myelin sheath -relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 relationship: has_part GO:0043209 ! myelin sheath +[Term] +id: CL:4023159 +name: double bouquet cell +def: "An interneuron that has double bouquet morphology." [PMID:15378039] +is_a: CL:0000099 ! interneuron +intersection_of: CL:0000099 ! interneuron +intersection_of: bearer_of PATO:0070061 ! double bouquet morphology +relationship: bearer_of PATO:0070061 ! double bouquet morphology +relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 + +[Term] +id: CL:4023168 +name: somatosensory neuron +def: "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli." [PMID:22865660] +is_a: CL:0000540 ! neuron +intersection_of: CL:0000540 ! neuron +intersection_of: part_of UBERON:0003942 ! somatosensory system +relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 +relationship: part_of UBERON:0003942 ! somatosensory system + [Term] id: CL:4028001 name: pulmonary capillary endothelial cell @@ -14974,7 +15216,7 @@ is_a: CL:0002144 ! capillary endothelial cell is_a: CL:2000016 ! lung microvascular endothelial cell intersection_of: CL:0002144 ! capillary endothelial cell intersection_of: part_of UBERON:0002048 ! lung -created_by: http://orcid.org/0000-0002-3293-5463 +relationship: dc-contributor https://orcid.org/0000-0002-3293-5463 creation_date: 2021-11-23T02:31:40Z [Term] @@ -14986,8 +15228,8 @@ synonym: "uveal melanocyte" EXACT [] is_a: CL:0000148 ! melanocyte intersection_of: CL:0000148 ! melanocyte intersection_of: part_of UBERON:0001768 ! uvea +relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 relationship: part_of UBERON:0001768 ! uvea -property_value: dc-contributor http://orcid.org/0000-0002-1773-2692 xsd:string creation_date: 2022-01-20T12:59:06Z [Term] @@ -20960,8 +21202,8 @@ synonym: "insulin-activated receptor activity" EXACT [] is_a: GO:0004714 ! transmembrane receptor protein tyrosine kinase activity is_a: GO:0016500 ! protein-hormone receptor activity intersection_of: GO:0038023 ! signaling receptor activity -intersection_of: has_input PR:000009054 -relationship: has_input PR:000009054 +intersection_of: has_input PR:000009054 ! insulin gene translation product +relationship: has_input PR:000009054 ! insulin gene translation product relationship: has_part GO:0043559 ! insulin binding relationship: in_taxon NCBITaxon:6072 ! Eumetazoa relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa @@ -30319,6 +30561,16 @@ intersection_of: occurs_in CL:0000540 ! neuron relationship: occurs_in CL:0000540 ! neuron relationship: part_of GO:0019226 ! transmission of nerve impulse +[Term] +id: GO:0019233 +name: sensory perception of pain +namespace: biological_process +def: "The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process." [GOC:curators] +synonym: "nociception" EXACT [] +synonym: "perception of physiological pain" NARROW [] +xref: Wikipedia:Nociception +is_a: GO:0007600 ! sensory perception + [Term] id: GO:0019318 name: hexose metabolic process @@ -32501,8 +32753,8 @@ def: "The regulated release of proinsulin from secretory granules accompanied by is_a: GO:0009306 ! protein secretion is_a: GO:0030072 ! peptide hormone secretion intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input PR:000009054 -relationship: has_primary_input PR:000009054 +intersection_of: has_primary_input PR:000009054 ! insulin gene translation product +relationship: has_primary_input PR:000009054 ! insulin gene translation product relationship: in_taxon NCBITaxon:6072 ! Eumetazoa relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa property_value: IAO:0000233 https://github.com/geneontology/go-ontology/issues/11255#issuecomment-426191045 xsd:anyURI @@ -35885,8 +36137,8 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to insulin stimulus" EXACT [GOC:dos] is_a: GO:0043434 ! response to peptide hormone intersection_of: GO:0042221 ! response to chemical -intersection_of: has_input PR:000009054 -relationship: has_input PR:000009054 +intersection_of: has_input PR:000009054 ! insulin gene translation product +relationship: has_input PR:000009054 ! insulin gene translation product [Term] id: GO:0032869 @@ -35896,7 +36148,7 @@ def: "Any process that results in a change in state or activity of a cell (in te is_a: GO:0032868 ! response to insulin is_a: GO:0071375 ! cellular response to peptide hormone stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_input PR:000009054 +intersection_of: has_input PR:000009054 ! insulin gene translation product [Term] id: GO:0032870 @@ -41484,10 +41736,11 @@ id: GO:0043559 name: insulin binding namespace: molecular_function def: "Binding to insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms." [ISBN:0198506732] +is_a: GO:0005515 ! protein binding is_a: GO:0017046 ! peptide hormone binding intersection_of: GO:0005488 ! binding -intersection_of: has_input PR:000009054 -relationship: has_input PR:000009054 +intersection_of: has_input PR:000009054 ! insulin gene translation product +relationship: has_input PR:000009054 ! insulin gene translation product property_value: RO:0002161 NCBITaxon:4751 [Term] @@ -48756,6 +49009,34 @@ intersection_of: GO:0009583 ! detection of light stimulus intersection_of: part_of GO:0007600 ! sensory perception relationship: part_of GO:0050953 ! sensory perception of light stimulus +[Term] +id: GO:0050968 +name: detection of chemical stimulus involved in sensory perception of pain +namespace: biological_process +def: "The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal." [GOC:ai] +synonym: "chemical nociception" RELATED [GOC:pr] +synonym: "perception of pain, detection of chemical stimulus" EXACT [] +synonym: "perception of pain, sensory detection of chemical stimulus" EXACT [] +synonym: "perception of pain, sensory transduction of chemical stimulus" EXACT [] +synonym: "sensory detection of chemical stimulus during perception of pain" EXACT [] +synonym: "sensory transduction of chemical stimulus during perception of pain" EXACT [] +is_a: GO:0050907 ! detection of chemical stimulus involved in sensory perception +is_a: GO:0062149 ! detection of stimulus involved in sensory perception of pain +intersection_of: GO:0009593 ! detection of chemical stimulus +intersection_of: part_of GO:0019233 ! sensory perception of pain + +[Term] +id: GO:0050975 +name: sensory perception of touch +namespace: biological_process +def: "The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach)." [GOC:ai] +synonym: "perception of touch" EXACT [] +synonym: "tactile sense" EXACT [] +synonym: "taction" EXACT [] +synonym: "tactition" EXACT [] +xref: Wikipedia:Touch +is_a: GO:0050954 ! sensory perception of mechanical stimulus + [Term] id: GO:0050994 name: regulation of lipid catabolic process @@ -50610,6 +50891,16 @@ synonym: "establishment of pigment granule localisation" EXACT [GOC:mah] is_a: GO:0051650 ! establishment of vesicle localization relationship: part_of GO:0051875 ! pigment granule localization +[Term] +id: GO:0051930 +name: regulation of sensory perception of pain +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal." [GOC:ai] +is_a: GO:0051931 ! regulation of sensory perception +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0019233 ! sensory perception of pain +relationship: regulates GO:0019233 ! sensory perception of pain + [Term] id: GO:0051931 name: regulation of sensory perception @@ -54108,9 +54399,9 @@ namespace: biological_process def: "The progression of the gall bladder over time, from its initial formation to the mature structure. The gall bladder is a cavitated organ that stores bile." [GOC:dph] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development -intersection_of: results_in_development_of UBERON:0002110 ! gall bladder +intersection_of: results_in_development_of UBERON:0002110 ! gallbladder relationship: part_of GO:0061008 ! hepaticobiliary system development -relationship: results_in_development_of UBERON:0002110 ! gall bladder +relationship: results_in_development_of UBERON:0002110 ! gallbladder created_by: dph creation_date: 2010-01-22T09:38:44Z @@ -55896,6 +56187,18 @@ relationship: results_in_development_of UBERON:0000945 ! stomach created_by: dph creation_date: 2018-11-20T18:15:45Z +[Term] +id: GO:0062149 +name: detection of stimulus involved in sensory perception of pain +namespace: biological_process +def: "The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal." [PMID:19837031] +is_a: GO:0050906 ! detection of stimulus involved in sensory perception +intersection_of: GO:0051606 ! detection of stimulus +intersection_of: part_of GO:0019233 ! sensory perception of pain +relationship: part_of GO:0019233 ! sensory perception of pain +created_by: dph +creation_date: 2019-09-13T13:48:47Z + [Term] id: GO:0062237 name: protein localization to postsynapse @@ -59369,6 +59672,17 @@ relationship: occurs_in CL:0000128 ! oligodendrocyte created_by: pr creation_date: 2012-03-05T10:51:15Z +[Term] +id: GO:0097254 +name: renal tubular secretion +namespace: biological_process +def: "The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs." [GOC:rph, PMID:25287933, Wikipedia:Renal_secretion#Secretion] +is_a: GO:0003014 ! renal system process +is_a: GO:0007588 ! excretion +property_value: IAO:0000233 https://github.com/geneontology/go-ontology/issues/22368 xsd:anyURI +created_by: pr +creation_date: 2012-03-05T02:03:58Z + [Term] id: GO:0097272 name: ammonium homeostasis @@ -64444,8 +64758,8 @@ def: "The chemical reactions and pathways involving insulin." [GOC:TermGenie] synonym: "insulin metabolism" EXACT [GOC:TermGenie] is_a: GO:0019538 ! protein metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output PR:000009054 -relationship: has_primary_input_or_output PR:000009054 +intersection_of: has_primary_input_or_output PR:000009054 ! insulin gene translation product +relationship: has_primary_input_or_output PR:000009054 ! insulin gene translation product property_value: RO:0002161 NCBITaxon:33090 created_by: pm creation_date: 2012-07-13T12:32:40Z @@ -64461,8 +64775,8 @@ synonym: "insulin degradation" EXACT [GOC:TermGenie] is_a: GO:0030163 ! protein catabolic process is_a: GO:1901142 ! insulin metabolic process intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input PR:000009054 -relationship: has_primary_input PR:000009054 +intersection_of: has_primary_input PR:000009054 ! insulin gene translation product +relationship: has_primary_input PR:000009054 ! insulin gene translation product created_by: pm creation_date: 2012-07-13T12:33:03Z @@ -71166,6 +71480,60 @@ relationship: positively_regulates GO:1990705 ! cholangiocyte proliferation created_by: sl creation_date: 2015-03-18T17:56:26Z +[Term] +id: GO:1904057 +name: negative regulation of sensory perception of pain +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain." [GO_REF:0000058, GOC:TermGenie, PMID:17167094] +synonym: "down regulation of nociception" EXACT [GOC:TermGenie] +synonym: "down regulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "down regulation of sensory perception of pain" EXACT [GOC:TermGenie] +synonym: "down-regulation of nociception" EXACT [GOC:TermGenie] +synonym: "down-regulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "down-regulation of sensory perception of pain" EXACT [GOC:TermGenie] +synonym: "downregulation of nociception" EXACT [GOC:TermGenie] +synonym: "downregulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "downregulation of sensory perception of pain" EXACT [GOC:TermGenie] +synonym: "inhibition of nociception" NARROW [GOC:TermGenie] +synonym: "inhibition of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "inhibition of sensory perception of pain" NARROW [GOC:TermGenie] +synonym: "negative regulation of nociception" EXACT [GOC:TermGenie] +synonym: "negative regulation of perception of physiological pain" NARROW [GOC:TermGenie] +is_a: GO:0031645 ! negative regulation of nervous system process +is_a: GO:0051930 ! regulation of sensory perception of pain +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0019233 ! sensory perception of pain +relationship: negatively_regulates GO:0019233 ! sensory perception of pain +created_by: sl +creation_date: 2015-03-18T20:33:57Z + +[Term] +id: GO:1904058 +name: positive regulation of sensory perception of pain +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of sensory perception of pain." [GO_REF:0000058, GOC:TermGenie, PMID:17167094] +synonym: "activation of nociception" NARROW [GOC:TermGenie] +synonym: "activation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "activation of sensory perception of pain" NARROW [GOC:TermGenie] +synonym: "positive regulation of nociception" EXACT [GOC:TermGenie] +synonym: "positive regulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "up regulation of nociception" EXACT [GOC:TermGenie] +synonym: "up regulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "up regulation of sensory perception of pain" EXACT [GOC:TermGenie] +synonym: "up-regulation of nociception" EXACT [GOC:TermGenie] +synonym: "up-regulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "up-regulation of sensory perception of pain" EXACT [GOC:TermGenie] +synonym: "upregulation of nociception" EXACT [GOC:TermGenie] +synonym: "upregulation of perception of physiological pain" NARROW [GOC:TermGenie] +synonym: "upregulation of sensory perception of pain" EXACT [GOC:TermGenie] +is_a: GO:0031646 ! positive regulation of nervous system process +is_a: GO:0051930 ! regulation of sensory perception of pain +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0019233 ! sensory perception of pain +relationship: positively_regulates GO:0019233 ! sensory perception of pain +created_by: sl +creation_date: 2015-03-18T20:34:03Z + [Term] id: GO:1904062 name: regulation of cation transmembrane transport @@ -80129,6 +80497,19 @@ xref: GC_ID:1 is_a: NCBITaxon:33317 ! Protostomia property_value: has_rank NCBITaxon:clade +[Term] +id: NCBITaxon:131209 +name: Zygnemophyceae +namespace: ncbi_taxonomy +synonym: "Conjugatophyceae" RELATED synonym [] +synonym: "Gamophyceae" RELATED synonym [] +synonym: "Gamophyta" RELATED synonym [] +synonym: "gamophytes" EXACT common_name [] +synonym: "Zygnematophyceae" RELATED synonym [] +xref: GC_ID:1 +is_a: NCBITaxon:131221 ! Streptophytina +property_value: has_rank NCBITaxon:class + [Term] id: NCBITaxon:131221 name: Streptophytina @@ -80199,6 +80580,14 @@ xref: GC_ID:1 is_a: NCBITaxon:58024 ! Spermatophyta property_value: has_rank NCBITaxon:clade +[Term] +id: NCBITaxon:1445966 +name: Gnetidae +namespace: ncbi_taxonomy +xref: GC_ID:1 +is_a: NCBITaxon:3372 ! Gnetopsida +property_value: has_rank NCBITaxon:subclass + [Term] id: NCBITaxon:147537 name: Saccharomycotina @@ -80390,6 +80779,14 @@ xref: GC_ID:1 is_a: NCBITaxon:2759 ! Eukaryota property_value: has_rank NCBITaxon:clade +[Term] +id: NCBITaxon:2684882 +name: Zygnematophycidae +namespace: ncbi_taxonomy +xref: GC_ID:1 +is_a: NCBITaxon:131209 ! Zygnemophyceae +property_value: has_rank NCBITaxon:subclass + [Term] id: NCBITaxon:2698737 name: Sar @@ -80440,6 +80837,14 @@ xref: PMID:15522813 is_a: NCBITaxon:314146 ! Euarchontoglires property_value: has_rank NCBITaxon:clade +[Term] +id: NCBITaxon:3176 +name: Zygnematales +namespace: ncbi_taxonomy +xref: GC_ID:1 +is_a: NCBITaxon:2684882 ! Zygnematophycidae +property_value: has_rank NCBITaxon:order + [Term] id: NCBITaxon:3193 name: Embryophyta @@ -80604,6 +81009,16 @@ xref: GC_ID:1 is_a: NCBITaxon:2611352 ! Discoba property_value: has_rank NCBITaxon:phylum +[Term] +id: NCBITaxon:3372 +name: Gnetopsida +namespace: ncbi_taxonomy +synonym: "Chlamydospermopsida" RELATED synonym [] +synonym: "Gneticae" RELATED synonym [] +xref: GC_ID:1 +is_a: NCBITaxon:1437180 ! Acrogymnospermae +property_value: has_rank NCBITaxon:class + [Term] id: NCBITaxon:337687 name: Muroidea @@ -80614,6 +81029,14 @@ xref: PMID:15371245 is_a: NCBITaxon:1963758 ! Myomorpha property_value: has_rank NCBITaxon:clade +[Term] +id: NCBITaxon:3378 +name: Gnetales +namespace: ncbi_taxonomy +xref: GC_ID:1 +is_a: NCBITaxon:1445966 ! Gnetidae +property_value: has_rank NCBITaxon:order + [Term] id: NCBITaxon:3398 name: Magnoliopsida @@ -104884,6 +105307,16 @@ synonym: "GATA2" EXACT PRO-short-label [PRO:DNx] is_a: CHEBI:36080 ! protein is_a: PR:000000001 ! protein +[Term] +id: PR:000009054 +name: insulin gene translation product +namespace: protein +def: "An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof." [PRO:DNx] +comment: Category=gene. +synonym: "INS" EXACT PRO-short-label [PRO:DNx] +synonym: "insulin" BROAD [PRO:DAN] +is_a: PR:000045358 ! insulin family protein + [Term] id: PR:000009127 name: integrin alpha-IIb @@ -105086,6 +105519,16 @@ synonym: "fam:CTS" EXACT PRO-short-label [PRO:DNx] is_a: PR:000036194 ! eukaryotic protein relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +[Term] +id: PR:000045358 +name: insulin family protein +namespace: protein +def: "A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide." [PRO:DAN] +comment: Category=family. +synonym: "fam:INS" EXACT PRO-short-label [PRO:DAN] +is_a: CHEBI:36080 ! protein +is_a: PR:000000001 ! protein + [Term] id: PR:000050216 name: receptor-type tyrosine-protein phosphatase C isoform CD45R @@ -107674,7 +108117,7 @@ is_a: BFO:0000003 ! occurrent is_a: UBERON:0000000 ! processual entity relationship: ends_with UBERON:0000071 ! death stage relationship: has_part UBERON:0000105 ! life cycle stage -relationship: starts_with UBERON:0000106 ! zygote stage +relationship: starts_with UBERON:0000106 {gci_relation="in_taxon", gci_filler="NCBITaxon:33208"} ! zygote stage property_value: seeAlso https://github.com/obophenotype/uberon/issues/532 xsd:anyURI [Term] @@ -110655,7 +111098,6 @@ intersection_of: capable_of GO:0050886 ! endocrine process disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system -disjoint_from: UBERON:0001008 ! renal system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system @@ -110668,6 +111110,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0050886 ! endocrine process relationship: composed_primarily_of UBERON:0002368 ! endocrine gland relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -111274,9 +111717,9 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "animal reproductive system" RELATED [BTO:0000081] -synonym: "genital system" RELATED [] +synonym: "genital system" NARROW [] synonym: "genital tract" RELATED [] -synonym: "genitalia" RELATED PLURAL [] +synonym: "genitalia" NARROW PLURAL [] synonym: "Geschlechtsorgan" RELATED [BTO:0000081] synonym: "organa genitalia" RELATED [BTO:0000081] synonym: "reproductive tissue" RELATED [BTO:0000081] @@ -111313,7 +111756,6 @@ intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of_part_of GO:0000003 ! reproduction disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system -disjoint_from: UBERON:0001008 ! renal system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system @@ -111326,11 +111768,13 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of_part_of GO:0000003 ! reproduction relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0000991 ! gonad property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg xsd:anyURI property_value: editor_note "consider splitting genitalia from reproductive system" xsd:string +property_value: http://purl.org/dc/terms/date 2022-06-10T18:22:34Z xsd:dateTime property_value: UBPROP:0000001 "Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010258", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000182", ontology="VHOG", source="PMID:21672850 Extavour CGM, Gray anatomy: phylogenetic patterns of somatic gonad structures and reproductive strategies across Bilateria. Integrative and Comparative Biology (2007)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000202 FMA:75572 @@ -111634,7 +112078,6 @@ is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0007585 ! respiratory gaseous exchange by respiratory system disjoint_from: UBERON:0001007 ! digestive system -disjoint_from: UBERON:0001008 ! renal system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system @@ -111647,6 +112090,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0003016 ! respiratory system process relationship: capable_of GO:0007585 ! respiratory gaseous exchange by respiratory system relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -111713,7 +112157,6 @@ xref: ZFA:0000339 is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0022600 ! digestive system process -disjoint_from: UBERON:0001008 ! renal system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system @@ -111726,6 +112169,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0022600 ! digestive system process relationship: existence_ends_during UBERON:0000066 ! fully formed stage property_value: UBPROP:0000001 "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000129", ontology="AAO", source="AAO:BJB"} @@ -111736,14 +112180,13 @@ property_value: UBPROP:0000012 "many anatomy ontologies consider gastrointestina id: UBERON:0001008 name: renal system namespace: uberon -def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.." [DOI:10.1371/journal.pone.0099864, GO:0072001] +def: "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products." [DOI:10.1371/journal.pone.0099864, GO:0072001] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "excretory system" EXACT [] +synonym: "excretory system" BROAD [] synonym: "renal or urinary system" RELATED [EHDAA:5901] -synonym: "renal system" EXACT [GO:0001977] synonym: "renal/urinary system" RELATED [] synonym: "systema urinaria" EXACT [FMA:7159] synonym: "systema urinarium" EXACT [BTO:0003092] @@ -111777,22 +112220,10 @@ xref: WBbt:0005736 xref: Wikipedia:Excretory_system xref: XAO:0000143 xref: ZFA:0000163 -is_a: UBERON:0000467 ! anatomical system -intersection_of: UBERON:0000467 ! anatomical system -intersection_of: capable_of GO:0007588 ! excretion -disjoint_from: UBERON:0001009 ! circulatory system -disjoint_from: UBERON:0001016 ! nervous system -disjoint_from: UBERON:0001033 ! gustatory system -disjoint_from: UBERON:0001434 ! skeletal system -disjoint_from: UBERON:0002204 ! musculoskeletal system -disjoint_from: UBERON:0002294 ! biliary system -disjoint_from: UBERON:0002330 ! exocrine system -disjoint_from: UBERON:0002390 ! hematopoietic system -disjoint_from: UBERON:0002405 ! immune system -disjoint_from: UBERON:0002416 ! integumental system -disjoint_from: UBERON:0002423 ! hepatobiliary system -disjoint_from: UBERON:0004456 ! entire sense organ system -relationship: capable_of GO:0007588 ! excretion +is_a: UBERON:8450002 ! excretory system +intersection_of: UBERON:8450002 ! excretory system +intersection_of: capable_of GO:0097254 ! renal tubular secretion +relationship: capable_of GO:0097254 ! renal tubular secretion relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa property_value: editor_note "In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here" xsd:string @@ -111827,6 +112258,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0003013 ! circulatory system process relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -111986,6 +112418,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0050877 ! nervous system process relationship: composed_primarily_of CL:0002319 ! neural cell relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -112234,6 +112667,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of_part_of GO:0050912 ! detection of chemical stimulus involved in sensory perception of taste relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa @@ -112621,6 +113055,8 @@ xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 +relationship: part_of UBERON:0003942 {gci_filler="GO:0050975", gci_relation="capable_of_part_of"} ! somatosensory system +relationship: part_of UBERON:0003942 {gci_relation="capable_of_part_of", gci_filler="GO:0019233"} ! somatosensory system [Term] id: UBERON:0001064 @@ -113497,11 +113933,11 @@ xref: ZFA:0005166 is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct intersection_of: UBERON:0000058 ! duct intersection_of: continuous_with UBERON:0001174 ! common bile duct -intersection_of: continuous_with UBERON:0002110 ! gall bladder +intersection_of: continuous_with UBERON:0002110 ! gallbladder disjoint_from: UBERON:0005171 ! hepatic duct relationship: channels_into UBERON:0001174 ! common bile duct relationship: continuous_with UBERON:0001174 ! common bile duct -relationship: continuous_with UBERON:0002110 ! gall bladder +relationship: continuous_with UBERON:0002110 ! gallbladder relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! extrahepatic part of hepatic duct property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png xsd:anyURI @@ -114763,7 +115199,7 @@ property_value: RO:0002175 NCBITaxon:9606 id: UBERON:0001264 name: pancreas namespace: uberon -def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]." [GO:0031016] +def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]." [GO:0031016] subset: efo_slim subset: human_reference_atlas subset: major_organ @@ -115421,6 +115857,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0004288 ! skeleton relationship: has_part UBERON:0004770 ! articular system @@ -116271,6 +116708,7 @@ xref: Wikipedia:Subclavian_artery is_a: UBERON:0001533 ! subclavian artery intersection_of: UBERON:0001533 ! subclavian artery intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: channels_from UBERON:0001508 ! arch of aorta relationship: in_left_side_of UBERON:0000468 ! multicellular organism property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg xsd:anyURI property_value: RO:0002175 NCBITaxon:9606 @@ -120481,10 +120919,11 @@ xref: MA:0001632 xref: NCIT:C49227 xref: UMLS:C1180206 {source="ncithesaurus:Gallbladder_Epithelium"} is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0034932 ! epithelium of biliary system intersection_of: UBERON:0000483 ! epithelium -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: contributes_to_morphology_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0002031 @@ -121627,8 +122066,7 @@ xref: Wikipedia:Visual_system xref: XAO:0003198 xref: ZFA:0001127 is_a: UBERON:0001032 ! sensory system -relationship: capable_of GO:0007601 ! visual perception -property_value: RO:0002171 UBERON:0002105 +relationship: capable_of_part_of GO:0007601 ! visual perception property_value: UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000632", ontology="AAO", source="AAO:EJS"} [Term] @@ -121653,6 +122091,7 @@ xref: TAO:0001138 xref: XAO:0003195 xref: ZFA:0001138 is_a: UBERON:0001032 ! sensory system +relationship: capable_of_part_of GO:0007605 ! sensory perception of sound property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg xsd:anyURI property_value: UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000631", ontology="AAO", source="AAO:EJS"} @@ -121822,7 +122261,7 @@ property_value: UBPROP:0000003 "Intestinal surface area also is increased in amp [Term] id: UBERON:0002110 -name: gall bladder +name: gallbladder namespace: uberon def: "An organ that aids digestion and stores bile produced by the liver[WP]." [Wikipedia:Gallbladder] comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) @@ -121831,8 +122270,8 @@ subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core +synonym: "cholecyst" EXACT [WikipediaVersioned:Gallbladder&oldid=1092217922] synonym: "gall bladder" EXACT [] -synonym: "gallbladder" EXACT [FMA:7202] synonym: "vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder] synonym: "vesica fellea" RELATED LATIN [Wikipedia:Gallbladder] xref: AAO:0010114 @@ -121864,8 +122303,8 @@ is_a: UBERON:0017672 ! abdominal viscera is_a: UBERON:0018707 {source="BTO"} ! bladder organ relationship: contributes_to_morphology_of UBERON:0001173 ! biliary tree relationship: develops_from UBERON:0004912 ! biliary bud -relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium -relationship: part_of UBERON:0002423 {source="MA", source="ZFA", source="cjm"} ! hepatobiliary system +relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gallbladder primordium +relationship: part_of UBERON:0002294 ! biliary system property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg xsd:anyURI property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg xsd:anyURI property_value: RO:0002161 NCBITaxon:10114 {source="ISBN:9780120749034"} @@ -122597,6 +123036,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of_part_of GO:0040011 ! locomotion relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm @@ -122954,6 +123394,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0006699 ! bile acid biosynthetic process relationship: capable_of GO:0015721 ! bile acid and bile salt transport relationship: has_part UBERON:0001173 ! biliary tree @@ -123293,7 +123734,7 @@ xref: VSAO:0000032 xref: Wikipedia:Notochord xref: XAO:0000055 xref: ZFA:0000135 -is_a: BFO:0000040 ! material entity +is_a: UBERON:0000062 {source="PMID:15890825"} ! organ is_a: UBERON:0000481 {source="VSAO"} ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0004880 {source="ZFA"} ! chordamesoderm @@ -123387,6 +123828,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: composed_primarily_of UBERON:0002365 ! exocrine gland relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa @@ -124377,6 +124819,7 @@ disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: develops_from UBERON:0003061 {evidence="definitional"} ! blood island relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0002193 {source="FMA"} ! hemolymphoid system @@ -124559,6 +125002,7 @@ is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0002376 ! immune system process relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: protects UBERON:0000468 ! multicellular organism @@ -124773,6 +125217,7 @@ xref: XAO:0000176 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: bounding_layer_of UBERON:0000468 ! multicellular organism relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0007376 ! outer epithelium @@ -124904,6 +125349,7 @@ xref: ZFA:0000036 is_a: BFO:0000040 ! material entity is_a: UBERON:0011216 ! organ system subdivision disjoint_from: UBERON:0004456 ! entire sense organ system +disjoint_from: UBERON:8450002 ! excretory system relationship: capable_of GO:0061007 ! hepaticobiliary system process relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0002107 ! liver @@ -126220,7 +126666,7 @@ xref: VHOG:0000109 xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode -relationship: has_potential_to_developmentally_contribute_to UBERON:0003942 ! somatic sensory system +relationship: has_potential_to_developmentally_contribute_to UBERON:0003942 ! somatosensory system property_value: UBPROP:0000001 "The ectodermal precursor of the trigeminal ganglion. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24.[XAO]" xsd:string {ontology="XAO"} property_value: UBPROP:0000001 "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000162", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The dorsolateral placodes (trigeminal and vestibular) develop from ectoderm lateral to the brain (...). In summary, the collective term 'placodes' refers to some rather different structures, probably with different evolutionary origins. Some sensory placodes (at least the otic and olfactory) may have homologues in basal chordates. Even if this is so, it is apparent that they were elaborated considerably during early vertebrate evolution. Epibranchial and dorsolateral placodes appear to be new; we infer that their origin depended on the evolution of specific inductive signals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000109", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"} @@ -127253,8 +127699,8 @@ xref: WBbt:0008422 is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000062 ! organ -intersection_of: capable_of GO:0000003 ! reproduction -relationship: capable_of GO:0000003 ! reproduction +intersection_of: capable_of_part_of GO:0000003 ! reproduction +relationship: capable_of_part_of GO:0000003 ! reproduction property_value: UBPROP:0000012 "GO uses genitalia for the singular organ" xsd:string {external_ontology="GO"} [Term] @@ -131741,23 +132187,20 @@ intersection_of: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0003942 -name: somatic sensory system +name: somatosensory system namespace: uberon alt_id: UBERON:0014511 def: "The sensory system for the sense of touch and pain." [NLXANAT:090818] subset: pheno_slim synonym: "somatic sensory system" EXACT [] -synonym: "somatosensory system" EXACT [NLXANAT:090818] synonym: "system for detection of somatic senses" EXACT [] xref: EMAPA:37954 {source="MA:th"} xref: neuronames:2887 xref: NLXANAT:090818 xref: Wikipedia:Somatosensory_system is_a: UBERON:0001032 ! sensory system -intersection_of: UBERON:0001032 ! sensory system -intersection_of: part_of UBERON:0000012 ! somatic nervous system -relationship: contributes_to_morphology_of UBERON:0000012 ! somatic nervous system -relationship: part_of UBERON:0000012 ! somatic nervous system +relationship: capable_of_part_of GO:0019233 ! sensory perception of pain +relationship: capable_of_part_of GO:0050975 ! sensory perception of touch property_value: UBPROP:0000001 "The neural tissue involved in the transmission of sensory signals" xsd:string {source="MP:0000959"} property_value: UBPROP:0000012 "MP defines this in a may more appropriate to somatosensory cortex" xsd:string {external_ontology="MP"} @@ -132596,7 +133039,6 @@ synonym: "external sex organ" RELATED [] xref: FMA:45643 xref: SCTID:362207005 is_a: UBERON:0003133 ! reproductive organ -relationship: part_of UBERON:3011048 ! genital system [Term] id: UBERON:0004177 @@ -132989,17 +133431,17 @@ property_value: UBPROP:0000012 "MA class may specifically mean muscle layer, but [Term] id: UBERON:0004240 -name: gall bladder smooth muscle +name: gallbladder smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] synonym: "biliary smooth muscle" RELATED [MA:0001635] synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic] synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic] +synonym: "gall bladder smooth muscle" EXACT [OBOL:automatic] synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic] synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic] synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic] -synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic] -synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic] +synonym: "gallbladder smooth muscle tissue" EXACT [] synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic] synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic] synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic] @@ -133014,8 +133456,8 @@ xref: NCIT:C49483 xref: UMLS:C1708179 {source="ncithesaurus:Gallbladder_Smooth_Muscle_Tissue"} is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0004242 @@ -133762,6 +134204,7 @@ subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 is_a: UBERON:0000467 ! anatomical system +disjoint_from: UBERON:8450002 ! excretory system relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: overlaps UBERON:0001016 ! nervous system property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string @@ -135117,13 +135560,13 @@ relationship: part_of UBERON:0004786 {is_inferred="true", source="https://github [Term] id: UBERON:0004781 -name: gall bladder lamina propria +name: gallbladder lamina propria namespace: uberon def: "A lamina propria that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] synonym: "biliary lamina propria" RELATED [MA:0001633] +synonym: "gall bladder lamina propria" EXACT [OBOL:automatic] synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic] -synonym: "gallbladder lamina propria" EXACT [OBOL:automatic] -synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic] +synonym: "gallbladder lamina propria mucosa" EXACT [] synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic] synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic] @@ -135135,7 +135578,7 @@ xref: NCIT:C49228 xref: UMLS:C1708175 {source="ncithesaurus:Gallbladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria -intersection_of: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder relationship: part_of UBERON:0005033 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! mucosa of gallbladder [Term] @@ -135159,12 +135602,12 @@ relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal syste [Term] id: UBERON:0004783 -name: gall bladder serosa +name: gallbladder serosa namespace: uberon def: "A serous membrane that is part of a gallbladder [Automatically generated definition]." [OBOL:automatic] synonym: "biliary serosa" RELATED [MA:0001634] -synonym: "gall bladder serous membrane" EXACT [OBOL:automatic] -synonym: "gallbladder serosa" EXACT [OBOL:automatic] +synonym: "gall bladder serosa" EXACT [OBOL:automatic] +synonym: "gall bladder serous membrane" EXACT [] synonym: "gallbladder serous membrane" EXACT [OBOL:automatic] synonym: "serosa of gall bladder" EXACT [OBOL:automatic] synonym: "serosa of gallbladder" EXACT [OBOL:automatic] @@ -135179,8 +135622,8 @@ xref: MA:0001634 xref: SCTID:362197006 is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0004784 @@ -136836,8 +137279,8 @@ xref: FMA:14662 xref: SCTID:362196002 is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0005039 @@ -139964,10 +140407,11 @@ relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0006242 -name: gall bladder primordium +name: gallbladder primordium namespace: uberon def: "A sac-like cavity ventral to the liver, lying in the sub-mesodermal space and closed by a thin sheet of ectodermal cells, from which the future gall bladder develops." [ISBN:0815318960, XAO:0004205] subset: emapa_ehdaa2 +synonym: "gall bladder primordium" EXACT [] xref: EHDAA2:0000700 xref: EHDAA:3047 xref: EMAPA:16713 @@ -139975,10 +140419,9 @@ xref: XAO:0004205 is_a: UBERON:0001048 ! primordium is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0001048 ! primordium -intersection_of: has_potential_to_develop_into UBERON:0002110 ! gall bladder +intersection_of: has_potential_to_develop_into UBERON:0002110 ! gallbladder relationship: develops_from UBERON:0001152 {source="EHDAA2"} ! cystic duct -relationship: has_potential_to_develop_into UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0001173 {source="cjm"} ! biliary tree +relationship: has_potential_to_develop_into UBERON:0002110 ! gallbladder relationship: part_of UBERON:0004912 {source="EMAPA"} ! biliary bud [Term] @@ -152215,8 +152658,8 @@ synonym: "gallbladder wall" EXACT [FMA:14657] xref: FMA:14657 is_a: UBERON:0003697 ! abdominal wall intersection_of: UBERON:0000060 ! anatomical wall -intersection_of: part_of UBERON:0002110 ! gall bladder -relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder +intersection_of: part_of UBERON:0002110 ! gallbladder +relationship: part_of UBERON:0002110 {source="FMA"} ! gallbladder [Term] id: UBERON:0036351 @@ -152531,17 +152974,6 @@ relationship: part_of UBERON:0002199 ! integument property_value: editor_note "Modified from the original AAO source" xsd:string property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} -[Term] -id: UBERON:3011048 -name: genital system -namespace: uberon -def: "Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs." [https://www.merriam-webster.com/dictionary/genitalia, XAO:0000142] -synonym: "genitalia" BROAD [] -synonym: "reproductive system" BROAD [] -is_a: UBERON:0000467 ! anatomical system -relationship: part_of UBERON:0004122 ! genitourinary system -property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} - [Term] id: UBERON:4000013 name: mineralized skeletal tissue @@ -152917,6 +153349,18 @@ def: "Collections of neurons in the central nervous system that have been demons is_a: UBERON:0002616 ! regional part of brain relationship: composed_primarily_of CL:0000459 ! noradrenergic cell +[Term] +id: UBERON:8450002 +name: excretory system +namespace: uberon +def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] +is_a: UBERON:0000467 ! anatomical system +intersection_of: UBERON:0000467 ! anatomical system +intersection_of: capable_of GO:0046903 ! secretion +relationship: capable_of GO:0046903 ! secretion +created_by: http://orcid.org/0000-0002-6095-8718 +creation_date: 2022-05-25T18:21:29Z + [Term] id: UBERON:8470000 name: placental blood diff --git a/pato-full.owl b/pato-full.owl index 6361b5c..b284417 100644 --- a/pato-full.owl +++ b/pato-full.owl @@ -4,6 +4,7 @@ xmlns:cl="http://purl.obolibrary.org/obo/cl#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:go="http://purl.obolibrary.org/obo/go#" + xmlns:pr="http://purl.obolibrary.org/obo/pr#" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" @@ -12,7 +13,7 @@ xmlns:cito="http://purl.org/spar/cito/" xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" xmlns:foaf="http://xmlns.com/foaf/0.1/" - xmlns:obo1="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/" + xmlns:obo2="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/" xmlns:pato="http://purl.obolibrary.org/obo/pato#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" @@ -21,23 +22,25 @@ xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/" - xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#2" - xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#3" - xmlns:chebi5="http://purl.obolibrary.org/obo/chebi#1" - xmlns:terms2="http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/" + xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#" + xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#2" + xmlns:chebi5="http://purl.obolibrary.org/obo/chebi#3" + xmlns:chebi6="http://purl.obolibrary.org/obo/chebi#1" + xmlns:terms1="http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/" xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" - xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"> + xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#" + xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#"> - + An ontology of phenotypic qualities (properties, attributes or characteristics). PATO - the Phenotype And Trait Ontology quality 1.2 - 2022-08-10 + 2022-08-31 @@ -386,6 +389,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -460,6 +487,22 @@ + + + + + + + + + + + + + + + + @@ -596,12 +639,84 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -706,6 +821,22 @@ + + + + + + + + + + + + + + + + @@ -714,6 +845,86 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -30267,6 +30478,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119. + BTO:0000725 CALOHA:TS-0448 FMA:70337 @@ -30277,6 +30489,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual blood forming stem cell hemopoietic stem cell colony forming unit hematopoietic + Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative. hematopoietic stem cell @@ -30542,60 +30755,6 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. - BTO:0002881 - CALOHA:TS-2360 - FMA:86684 - NSC - neural stem cell - neuronal stem cell - - - - - - true - - - - - Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. - GOC:tfm - MESH:D058953 - PMID:15247488 - http://en.wikipedia.org/wiki/Neural_stem_cell - - - - @@ -30647,6 +30806,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. + BTO:0004730 CMP common myeloid precursor @@ -30656,6 +30816,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual multipotential myeloid stem cell myeloid stem cell pluripotent stem cell (bone marrow) + This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059). common myeloid progenitor @@ -30754,6 +30915,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell committed to the megakaryocyte and erythroid lineages. + CFU-EM CFU-MegE MEP @@ -30761,6 +30923,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual colony forming unit erythroid megakaryocyte megakaryocyte/erythrocyte progenitor megakaryocyte/erythroid progenitor cell + MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2. megakaryocyte-erythroid progenitor cell @@ -30807,6 +30970,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A oligopotent progenitor cell committed to the lymphoid lineage. + CL:0000044 CLP common lymphocyte precursor @@ -30817,6 +30981,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual early lymphocyte progenitor lymphoid stem cell lymphopoietic stem cell + CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. common lymphoid progenitor @@ -30913,10 +31078,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. + BTO:0000452 CALOHA:TS-0362 FMA:63877 VHOG:0001482 + These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. fibroblast @@ -31013,6 +31180,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. + BTO:0000414 CALOHA:TS-2026 CARO:0000077 @@ -31020,6 +31188,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual FMA:66768 WBbt:0003672 epitheliocyte + epithelial cell @@ -31134,7 +31303,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the vasculature. + cuboidal endothelial cell of vascular tree + blood vessel endothelial cell @@ -31158,6 +31329,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube. + + columnar/cuboidal epithelial cell @@ -31187,8 +31360,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A flattened epithelial cell of mesenchymal origin that lines the serous cavity. + FMA:66773 mesotheliocyte + mesothelial cell @@ -31406,6 +31581,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. + CL:0000804 CL:0000812 BTO:0000782 @@ -31418,6 +31594,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual T-lymphocyte immature T cell mature T cell + T cell @@ -31540,11 +31717,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive. + BTO:0000968 CALOHA:TS-0721 FMA:66781 MESH:D010010 chondroclast + Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. osteoclast @@ -31672,6 +31851,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte with abundant granules in the cytoplasm. + BTO:0000539 BTO:0001026 CALOHA:TS-0422 @@ -31679,6 +31859,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual granular leucocyte granular leukocyte polymorphonuclear leukocyte + granulocyte @@ -31753,10 +31934,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. + BTO:0003811 FBbt:00005125 FMA:67313 WBbt:0005113 + interneuron @@ -31991,10 +32174,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm. + BTO:0001176 CALOHA:TS-0278 FMA:66772 endotheliocyte + From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]. endothelial cell @@ -32298,12 +32483,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. + CL:0000450 BTO:0000443 CALOHA:TS-0012 FMA:63880 adipocyte adipose cell + fat cell @@ -32438,6 +32625,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. + CL:0000572 BTO:0000847 CALOHA:TS-0613 @@ -32445,6 +32633,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual MESH:D008544 VHOG:0001679 melanophore + melanocyte @@ -32521,8 +32710,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that specializes in controlled release of one or more substances. + BTO:0003659 FMA:86916 + secretory cell @@ -32695,11 +32886,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium. + BTO:0004811 FMA:14119 Clara cell bronchiolar non-ciliated cell club cell of bronchiole + club cell @@ -32831,9 +33024,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. + BTO:0002691 FMA:83810 neurosecretory cell + neuroendocrine cell @@ -32934,6 +33129,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that secretes insulin and is located towards the center of the islets of Langerhans. + beta cell BTO:0000783 EV:0200009 @@ -32949,6 +33145,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual pancreatic islet core type B enteroendocrine cell beta cell islet + Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression. type B pancreatic cell @@ -33094,11 +33291,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon. + BTO:0000990 FMA:70585 MESH:D050416 alpha cell of islet of Langerhans pancreatic alpha cell + pancreatic A cell @@ -33167,6 +33366,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. + BTO:0000803 FMA:70587 D-cell of pancreatic islet @@ -33175,6 +33375,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual pancreatic D-cell pancreatic delta cell somatostatin-secreting pancreatic cell + pancreatic D cell @@ -33245,9 +33446,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated. + BTO:0000575 CALOHA:TS-0454 FMA:14515 + Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive. hepatocyte @@ -33337,10 +33540,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A somatic cell located in skeletal muscle. + BTO:0004392 CALOHA:TS-2158 FMA:9727 skeletal muscle cell + cell of skeletal muscle @@ -33364,6 +33569,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). + CL:0000191 non-striated muscle cell BTO:0004576 @@ -33372,6 +33578,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual SMCs myocytes, smooth muscle smooth muscle fiber + smooth muscle cell @@ -33974,11 +34181,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. + BTO:0000424 CALOHA:TS-0290 FMA:81100 RBC red blood cell + erythrocyte @@ -34074,12 +34283,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + BTO:0000801 CALOHA:TS-0587 FMA:63261 FMA:83585 MESH:D008264 histiocyte + Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. macrophage @@ -34124,6 +34335,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + stratified squamous epithelial cell @@ -34142,8 +34355,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. + FMA:70548 Merkel's cell + Merkel cell @@ -34235,6 +34450,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + eye photoreceptor cell @@ -34417,12 +34634,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. + CL:0002185 BTO:0000667 CALOHA:TS-0500 FMA:62879 keratinized cell of epidermis malpighian cell + Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive. keratinocyte @@ -34457,9 +34676,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid. + BTO:0003687 FMA:62511 serous cell + serous secreting cell @@ -34898,8 +35119,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell associated with the vasculature. + VSMC vascular smooth muscle cell + vascular associated smooth muscle cell @@ -35345,12 +35568,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative). + BTO:0002042 CALOHA:TS-0194 FMA:83036 MESH:D003713 interdigitating cell veiled cell + dendritic cell @@ -35605,6 +35830,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A peptide hormone secreting cell that secretes gastrin. + + gastrin secreting cell @@ -35800,10 +36027,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. + FMA:83043 plasmidotrophoblast syncytial trophoblast syntrophoblast + syncytiotrophoblast cell @@ -35821,8 +36050,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron which conveys sensory information centrally from the periphery. + FMA:87653 input neuron + afferent neuron @@ -35893,6 +36124,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. + BTO:0000938 CALOHA:TS-0683 FBbt:00005106 @@ -35900,6 +36132,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual VHOG:0001483 WBbt:0003679 nerve cell + These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. neuron @@ -35994,11 +36227,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. + BTO:0000775 CALOHA:TS-0583 FMA:62863 MESH:D008214 VHOG:0001535 + Editors note: consider adding taxon constraint to vertebrata (PMID:18025161) lymphocyte @@ -36682,6 +36917,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative). + BTO:0001164 CALOHA:TS-0610 FMA:84235 @@ -36696,6 +36932,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual megakaryocytic progenitor cell promegacaryocyte promegakaryocyte + Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative. megakaryocyte progenitor cell @@ -36775,12 +37012,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm. + BTO:0000843 CALOHA:TS-0611 FMA:83555 megacaryocyte megalocaryocyte megalokaryocyte + Megakaryocytes are reportedly CD181-positive and CD182-positive. megakaryocyte @@ -37173,8 +37412,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules. + BTO:0004657 FMA:83551 + Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. promonocyte @@ -37432,6 +37673,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + @@ -37461,9 +37703,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. + BTO:0001036 CALOHA:TS-0866 FMA:67748 + retinal cone cell @@ -37498,11 +37742,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the cornea. + CL:1000431 BTO:0004298 CALOHA:TS-0173 FMA:70551 epithelial cell of cornea + corneal epithelial cell @@ -37574,9 +37820,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. + BTO:0000876 CALOHA:TS-0638 FMA:62864 + Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. monocyte @@ -37756,9 +38004,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. + BTO:0001024 CALOHA:TS-0870 FMA:67747 + retinal rod cell @@ -37822,8 +38072,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament. + BTO:0000939 FMA:62516 + basal cell @@ -38310,12 +38562,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. + BTO:0001800 FMA:67765 MESH:D012165 RGC gangliocyte ganglion cell of retina + retinal ganglion cell @@ -38374,6 +38628,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. + FMA:83808 cardiocyte BTO:0001539 @@ -38384,6 +38639,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual cardiac myocyte cardiomyocyte heart muscle cell + This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. cardiac muscle cell @@ -38447,6 +38703,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. + + retinal bipolar neuron @@ -38481,9 +38739,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. + BTO:0001441 CALOHA:TS-0647 MESH:D022423 + myeloid cell @@ -38506,11 +38766,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A immature or mature cell in the lineage leading to and including erythrocytes. + CL:0002156 CALOHA:TS-0290 FMA:62845 FMA:83516 erythropoietic cell + Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes. erythroid lineage cell @@ -38773,6 +39035,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. + PMN poly polymorphonuclear leucocyte @@ -38789,6 +39052,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual neutrophil leukocyte neutrophilic leucocyte neutrophilic leukocyte + neutrophil @@ -38877,6 +39141,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. + + Morphology: mononuclear, highly vesicular. mononuclear osteoclast @@ -38923,7 +39189,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized multinuclear osteoclast associated with the absorption and removal of bone. + multinucleated osteoclast + Morphology: multinucleated, highly vesicular. multinuclear osteoclast @@ -39293,8 +39561,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative. + CALOHA:TS-0825 FMA:83530 + promyelocyte @@ -39480,10 +39750,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. + BTO:0000725 CALOHA:TS-0448 MPP hemopoietic progenitor cell + Markers differ between mouse and human. hematopoietic multipotent progenitor cell @@ -39840,6 +40112,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Conventional dendritic cell is a dendritic cell that is CD11c-high. + interdigitating cell veiled cell FMA:84191 @@ -39847,6 +40120,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual cDC dendritic reticular cell type 1 DC + Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive. conventional dendritic cell @@ -40790,7 +41064,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A connective tissue cell found in bone. - adiehl + 2011-11-16T04:28:16Z bone cell @@ -40862,7 +41136,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A monocyte that expresses CD14 and is negative for the lineage markers CD3, CD19, and CD20. + monocyte + This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes. CD14-positive monocyte @@ -41164,7 +41440,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. - tmeehan + 2010-01-06T03:43:27Z hematopoietic oligopotent progenitor cell, lineage-negative @@ -41200,8 +41476,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models. - - 2017-01-30T18:53:32Z + + 2017-01-30T18:53:32Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12913 https://github.com/obophenotype/cell-ontology/issues/448 abnormal cell @@ -41239,8 +41515,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. - - 2017-01-30T19:16:26Z + + 2017-01-30T19:16:26Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12922 tumor cell tumour cell @@ -41280,8 +41556,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neoplastic cell that is capable of entering a surrounding tissue - - 2017-01-30T19:39:12Z + + 2017-01-30T19:39:12Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12917 cancer cell https://github.com/obophenotype/cell-ontology/issues/448 @@ -41557,7 +41833,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An erythroid progenitor cell is Kit-positive, Ly6A-negative, CD41-negative, CD127-negative, and CD123-negative. This cell type is also described as being lin-negative, Kit-positive, CD150-negative, CD41-negative, CD105-positive, and FcgR-negative. - tmeehan + 2010-04-26T10:14:16Z c- Kit-positive erythroid progenitor cell Markers found on mouse cells. @@ -41623,7 +41899,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3receptor-alpha-positive and is CD45RA-negative. - tmeehan + 2010-01-13T03:19:22Z Markers are for human cells. According to different research groups, CD45RA is present or absent on this cell population. CD34-positive, CD38-positive granulocyte monocyte progenitor @@ -41697,7 +41973,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative. - tmeehan + 2010-01-13T03:43:10Z Markers are associated with human cell type. CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell @@ -41801,7 +42077,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low. - tmeehan + 2010-01-13T03:43:12Z Markers are associated with mouse cells. Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell @@ -41864,7 +42140,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. - tmeehan + 2010-01-19T02:51:58Z MDP macrophage dendritic cell progenitor @@ -41953,7 +42229,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A proerythoblast that is Kit-low, Lyg76-positive, and CD71-positive. - tmeehan + 2010-04-26T10:31:56Z Markers are associated with mouse cells. Kit-low proerythroblast @@ -42033,7 +42309,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A basophilic erythroblast that is Lyg 76-high and is Kit-negative. - tmeehan + 2010-04-26T10:41:22Z Cell surface markers are associated with mouse cells. Kit-negative, Ly-76 high basophilic erythroblast @@ -42113,7 +42389,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A polychromatophilic erythroblast that is Lyg 76-high and is Kit-negative. - tmeehan + 2010-04-26T10:53:11Z late basophilic and polychromatophilic erythroblast Kit-negative, Ly-76 high polychromatophilic erythroblast @@ -42203,7 +42479,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative. - tmeehan + 2010-04-26T11:04:15Z Cell surface markers associated with mouse cells. Kit-negative, Ly-76 high orthochromatophilic erythroblasts @@ -42253,7 +42529,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte that is Ly76-high and is Kit-negative. - tmeehan + 2010-04-26T11:37:00Z Marker associated with mouse cells. Ly-76 high reticulocyte @@ -42303,7 +42579,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enucleate erythrocyte that is Lyg-76-high. - tmeehan + 2010-04-26T11:51:27Z Marker is associated with mouse cell types. Ly-76 high positive erythrocyte @@ -42355,7 +42631,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells. - tmeehan + 2010-01-06T03:43:20Z hematopoietic lineage restricted progenitor cell @@ -42398,7 +42674,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. - tmeehan + 2010-01-06T03:43:27Z This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060). hematopoietic oligopotent progenitor cell @@ -42456,7 +42732,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell capable of rapid replenishment of myeloerythroid progenitors and limited self renewal capability. This cell is Kit-positive, Sca1-positive, CD34-positive, CD150-positive, and is Flt3-negative. - tmeehan + 2010-01-08T09:19:25Z ST stem cell ST-HSC @@ -42526,7 +42802,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell with long term self renewal capability. This cell is Kit-positive, Sca1-positive, CD150-positive, CD90-low, CD34-negative and Flt3-negative. - tmeehan + 2010-01-08T09:19:28Z LT stem cell LT-HSC @@ -42608,7 +42884,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor that has restricted self-renewal capability. Cell is Kit-positive, Ly6-positive, CD150-negative and Flt3-negative. - tmeehan + 2010-01-08T11:16:33Z Markers are associated with mouse cells. Slamf1-negative multipotent progenitor cell @@ -42678,7 +42954,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor that has some limited self-renewal capability. Cells are lin-negative, Kit-positive, CD34-positive, and Slamf1-positive. - tmeehan + 2010-01-08T11:16:35Z KSL cell Markers are associated with mouse cells. @@ -42752,7 +43028,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic multipotent progenitor cell that is CD34-positive, CD38-negative, CD45RA-negative, and CD90-negative. - tmeehan + 2010-01-12T11:14:15Z Cell markers are associated with human hematopoietic multipotent progenitor cells. CD34-positive, CD38-negative multipotent progenitor cell @@ -42803,12 +43079,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. - tmeehan + + 2010-06-24T03:16:29Z BTO:0000028 CALOHA:TS-0737 FMA:63032 acinar cell of pancreas + pancreatic acinar cell @@ -42846,7 +43124,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that produces glucagon. - tmeehan + 2010-09-10T10:48:54Z FMA:62939 type A enteroendocrine cell @@ -42866,7 +43144,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter. - tmeehan + 2010-06-28T08:36:15Z BTO:0001032 FMA:14146 @@ -42891,7 +43169,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery. - tmeehan + 2010-06-29T11:41:37Z pacemaker cell BTO:0004190 @@ -42922,7 +43200,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes. - tmeehan + 2010-06-29T02:39:32Z FMA:67142 transitional myocyte @@ -42943,7 +43221,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides). - tmeehan + 2010-06-29T11:50:47Z FMA:67111 myocardial endocrine cell @@ -42970,7 +43248,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell derived from endoderm. - tmeehan + 2010-06-29T03:38:14Z FMA:69075 endo-epithelial cell @@ -43008,7 +43286,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell derived from ectoderm. - tmeehan + 2010-06-29T03:38:22Z FMA:69074 ecto-epithelial cell @@ -43046,7 +43324,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cell derived from mesoderm or mesenchyme. - tmeehan + 2010-06-29T03:49:14Z FMA:69076 epithelial mesenchymal cell @@ -43096,9 +43374,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH. - tmeehan + + 2010-06-30T08:49:43Z FMA:63099 + pancreatic ductal cell @@ -43145,11 +43425,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. - tmeehan + + 2010-06-30T08:49:52Z FMA:62455 centroacinar cell of Langerhans pancreatic centroacinar cell + pancreatic centro-acinar cell @@ -43169,7 +43451,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart. - tmeehan + 2010-07-21T01:33:38Z FMA:67968 specialized cardiac myocyte @@ -43206,7 +43488,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte that lacks granules. - tmeehan + 2010-07-22T11:30:33Z FMA:62855 agranular leukocyte @@ -43250,7 +43532,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise. - tmeehan + 2010-07-22T03:26:00Z BTO:0003914 FMA:86573 @@ -43304,7 +43586,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells. - tmeehan + 2010-07-22T04:48:15Z BTO:0004850 FMA:83621 @@ -43334,10 +43616,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell in the hilum of the ovary that produces androgens. - tmeehan + + 2010-08-23T11:18:18Z FMA:18710 hilar cell of ovary + hilus cell of ovary @@ -43372,7 +43656,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stomal cell of the ovary - tmeehan + 2010-08-23T12:10:31Z FMA:72299 ovarian stromal cell @@ -43398,7 +43682,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels. - tmeehan + 2010-08-24T02:06:40Z BTO:0001854 CALOHA:TS-1106 @@ -43441,11 +43725,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in capillaries. - tmeehan + + 2010-08-24T10:15:00Z BTO:0004956 CALOHA:TS-0112 FMA:67756 + capillary endothelial cell @@ -43469,9 +43755,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree. - tmeehan + + 2010-08-24T03:38:29Z FMA:70542 + ciliated columnar cell of tracheobronchial tree @@ -43506,7 +43794,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the uterus. - tmeehan + 2010-08-24T10:45:54Z CL:1000294 FMA:256161 @@ -43532,7 +43820,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cells derived from general body ectoderm and ectoderm placodes. - tmeehan + 2010-08-26T08:31:08Z FMA:70556 general ecto-epithelial cell @@ -43570,7 +43858,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A keratinized cell located in the hard palate or gingiva. - tmeehan + 2010-08-26T02:51:30Z keratinized cell of the oral mucosa @@ -43606,7 +43894,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell found in the lining of the stomach. - tmeehan + 2010-08-25T03:22:08Z CL:1000399 FMA:62948 @@ -43649,7 +43937,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mucous cell in the epithelium of the stomach. - tmeehan + 2010-08-25T03:38:51Z CL:1000404 FMA:63464 @@ -43688,7 +43976,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit. - tmeehan + 2010-08-25T03:57:08Z CL:1000400 FMA:62953 @@ -43729,7 +44017,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A basally situated, mitotically active, columnar-shaped keratinocyte attached to the basement membrane. - tmeehan + 2010-08-26T03:12:49Z CL:1000439 FMA:70571 @@ -43773,7 +44061,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell involved in the formation of a granulocyte. - tmeehan + 2010-08-30T12:54:27Z FMA:83519 granulocytopoietic cell @@ -43815,7 +44103,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell involved in the formation of a monocyte (monopoiesis). - tmeehan + 2010-08-30T01:27:48Z FMA:83552 monopoietic cell @@ -43857,7 +44145,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell that can give rise to the cells of the liver. The term usually refers to the self-renewing pool of hepatocyte precursors in the adult liver (differently from 'hepatoblast', often used for fetal precursors of hepatocytes). - tmeehan + 2010-08-30T02:00:42Z FMA:86577 HpSC @@ -43909,7 +44197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the tracheobronchial tree. - tmeehan + 2010-09-02T02:09:14Z CL:1000407 FMA:66816 @@ -43929,7 +44217,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells. - tmeehan + 2010-09-02T02:53:59Z FMA:69060 undifferentiated columnar cell of tracheobronchial tree @@ -43958,7 +44246,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye. - tmeehan + 2010-09-07T10:38:03Z FMA:70950 vertebrate lens cell @@ -43996,9 +44284,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth. - tmeehan + + 2010-09-07T10:45:47Z FMA:67559 + lens epithelial cell @@ -44035,7 +44325,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast in the bone marrow. - tmeehan + 2010-09-07T02:25:18Z FMA:84377 marrow fibroblast @@ -44071,7 +44361,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell containing at least one nucleus. - tmeehan + 2010-09-07T03:32:33Z FMA:67513 nucleate cell @@ -44113,7 +44403,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells. - tmeehan + 2010-09-08T08:53:42Z FMA:70611 smooth muscle fiber of sphincter of pupil @@ -44160,7 +44450,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells). - tmeehan + 2010-09-07T03:57:09Z BTO:0002669 FMA:86711 @@ -44205,7 +44495,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus. - tmeehan + 2010-09-08T09:26:53Z epithelial cell of alimentary canal @@ -44241,7 +44531,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the esophagus. - tmeehan + 2010-09-08T09:28:20Z CL:1000402 FMA:63071 @@ -44284,7 +44574,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the large intestine. - tmeehan + 2010-09-08T09:28:22Z CL:1000292 BTO:0004297 @@ -44329,7 +44619,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the small intestine. - tmeehan + 2010-09-08T09:41:46Z CL:1000293 FMA:256159 @@ -44372,11 +44662,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Connective tissue cells of the endometrium, these cells are fibroblastic in appearance. During decidualization they tranform into decidual (stromal) cells, swellling up and adopt an epithelial cell-like appearance due to the accumulation of glycogen and lipid droplets. - tmeehan + + 2010-09-08T09:50:04Z CALOHA:TS-1266 FMA:86490 endometrial stromal cell + stromal cell of endometrium @@ -44401,7 +44693,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the mucosa associated with the facial skeleton. - tmeehan + 2010-09-14T10:40:12Z CL:1000446 FMA:70627 @@ -44439,10 +44731,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver. - tmeehan + + 2010-09-14T10:57:26Z CL:1000403 FMA:63134 + endothelial cell of sinusoid @@ -44472,7 +44766,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of enteroendocrine cell found in the stomach that secretes glucagon. - tmeehan + 2010-09-10T10:54:42Z FMA:83411 type A cell of stomach @@ -44503,7 +44797,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A D cell located in the colon. - tmeehan + 2010-09-10T11:37:35Z FMA:268744 colon D-cell @@ -44537,7 +44831,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type D cell of the small intestine. - tmeehan + 2010-09-10T01:34:22Z FMA:268736 delta cell of small intestine @@ -44571,7 +44865,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type D cell found in the stomach. - tmeehan + 2010-09-10T01:36:03Z FMA:83410 delta cell of stomach @@ -44616,7 +44910,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A PP cell located in the islets of the pancreas. - tmeehan + + 2010-09-10T03:30:31Z BTO:0000805 FMA:70588 @@ -44624,6 +44919,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual PP cell of pancreatic islet PP-cell of pancreatic islet pancreatic polypeptide-secreting cell + The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell. pancreatic PP cell @@ -44658,7 +44954,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of a skin gland. - tmeehan + 2010-09-14T12:00:07Z FMA:70657 epithelial cell of gland of skin @@ -44697,7 +44993,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that is part of the nervous system. - tmeehan + 2010-09-15T01:34:57Z CALOHA:TS-2040 FMA:70333 @@ -44737,7 +45033,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. - tmeehan + 2010-09-15T03:01:54Z CL:1000406 CALOHA:TS-2096 @@ -44766,7 +45062,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the embryo. - tmeehan + 2010-09-15T03:39:21Z CALOHA:TS-0263 FMA:82840 @@ -44805,7 +45101,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the bronchus. - tmeehan + 2010-09-20T02:00:00Z BTO:0002922 bronchial epithelial cell @@ -44836,8 +45132,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated cell of the bronchus. - tmeehan + + 2010-09-20T02:21:12Z + ciliated cell of the bronchus @@ -44872,7 +45170,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell derived from a neural crest cell. - tmeehan + 2010-09-20T02:25:25Z neural crest derived fat cell @@ -44891,7 +45189,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek. - tmeehan + 2010-09-20T02:52:54Z buccal mucosa cell @@ -44927,7 +45225,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin. - tmeehan + 2010-09-21T04:33:05Z CL:1000475 FMA:75621 @@ -44956,7 +45254,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1. - tmeehan + 2010-09-21T04:41:06Z pancreatic endocrine progenitor pancreatic islet progenitor cell @@ -44996,7 +45294,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell that exists during embryogenesis. - tmeehan + 2010-09-22T09:05:13Z gestational hematopoietic stem cell @@ -45032,7 +45330,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell of the placenta. This cell type is first observed E10.5 This cell type may give rise to fetal liver hematopoietic stem cells. - tmeehan + 2010-09-22T10:30:02Z placental hematopoietic stem cell @@ -45068,10 +45366,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate. - tmeehan + + 2010-09-22T01:57:40Z corneal fibroblast corneal keratocyte + keratocyte @@ -45106,7 +45406,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endo-epithelial cell of the respiratory tract. - tmeehan + 2010-09-23T04:38:49Z BTO:0004533 airway epithelial cell @@ -45142,7 +45442,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). - tmeehan + 2010-09-24T09:44:42Z BTO:0001268 FMA:72300 @@ -45191,7 +45491,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A transversely striated, synctial muscle cell, formed by the fusion of myoblasts. - tmeehan + 2010-09-24T01:13:01Z CL:0000369 FBbt:00005812 @@ -45223,7 +45523,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A giioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19. - tmeehan + 2010-09-24T02:06:10Z Schwann cell precursor cell Schwann cell precursor @@ -45248,7 +45548,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. - tmeehan + 2010-09-24T02:10:31Z Schwann cell ZFA:0001725 @@ -45282,7 +45582,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles. - tmeehan + 2010-10-15T09:24:05Z nucleated reticulocyte @@ -45331,7 +45631,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes. - tmeehan + 2010-10-15T09:24:08Z CALOHA:TS-0864 FMA:66785 @@ -45376,8 +45676,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. - http://orcid.org/0000-0002-1773-2692 - tmeehan + + 2010-11-10T02:51:34Z O-2A/OPC O2A/OPC @@ -45421,7 +45721,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual oligodendrocyte/type-2 astrocyte progenitor cell - http://orcid.org/0000-0002-0819-0473 + PMID:24133281 @@ -45467,7 +45767,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive. - tmeehan + 2010-11-22T01:10:28Z DC.8-4-11b+ spleen double-negative dendritic cell @@ -45511,7 +45811,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A conventional dendritic cell that expresses CD11b (ITGAM). - tmeehan + 2010-11-23T01:50:05Z CD11b-positive dendritic cell @@ -45553,7 +45853,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that produces pigment in the dermis. - tmeehan + 2010-12-03T03:17:05Z dermal melanocyte @@ -45590,7 +45890,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that produces pigment in the epithelium. - tmeehan + 2010-12-03T03:17:14Z The text defintion reference to the MP term appears to reference an epidermal melanocyte term. This term represents any melanocyte in any epithelium. epithelial melanocyte @@ -45633,7 +45933,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium. - tmeehan + 2010-12-03T03:25:32Z retinal melanocyte @@ -45677,7 +45977,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell located in the heart, including both muscle and non muscle cells. - tmeehan + 2010-12-07T09:37:22Z BTO:0001539 CALOHA:TS-0115 @@ -45725,7 +46025,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc - tmeehan + 2010-12-07T04:03:56Z BTO:0002441 FMA:84639 @@ -45762,7 +46062,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the intestine. - tmeehan + 2011-01-17T03:39:38Z intestinal smooth muscle cell enteric smooth muscle cell @@ -45804,9 +46104,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell that is part of subcutaneous adipose tissue. - tmeehan + + 2011-02-21T02:51:22Z subcutaneous adipocyte + subcutaneous fat cell @@ -45846,7 +46148,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the intrahepatic portion of the bile duct. These cells are flattened or cuboidal in shape, and have a small nuclear-to-cytoplasmic ratio relative to large/extrahepatic cholangiocytes. - tmeehan + 2011-02-28T01:20:20Z small bile duct cholangiocyte intrahepatic cholangiocyte @@ -45895,7 +46197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the aorta. - tmeehan + 2011-02-28T01:42:12Z BTO:0004577 aortic smooth muscle cell @@ -45926,7 +46228,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell that is part of the bone marrow. - tmeehan + 2011-02-28T01:47:47Z mesenchymal stem cell of the bone marrow @@ -45961,7 +46263,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of the chorionic membrane. - tmeehan + 2011-02-28T03:04:35Z chorionic membrane mesenchymal stem cell @@ -45996,13 +46298,15 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the vein. - tmeehan + + 2011-02-28T03:48:11Z CL:1000393 FMA:62104 KUPO:0001099 endothelial cell of vein venous endothelial cell + vein endothelial cell @@ -46026,7 +46330,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial progenitor cell that participates in angiogenesis during development. - tmeehan + 2011-02-28T04:20:39Z See CL:0002619. embryonic blood vessel endothelial progenitor cell @@ -46062,7 +46366,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of the aortic adventitia. - tmeehan + 2011-02-28T04:43:41Z fibroblast of the aortic adventitia @@ -46104,7 +46408,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of the heart. - tmeehan + 2011-02-28T04:57:44Z cardiac fibroblast fibroblast of cardiac tissue @@ -46151,7 +46455,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + 2011-02-28T05:05:33Z fibroblast of dermis @@ -46186,7 +46490,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of lung. - tmeehan + 2011-02-28T05:11:03Z BTO:0000764 CALOHA:TS-0575 @@ -46229,7 +46533,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of pulmonary artery. - tmeehan + 2011-02-28T05:22:27Z fibroblast of pulmonary artery @@ -46270,7 +46574,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the intestine. - tmeehan + 2011-03-01T05:18:31Z intestinal epithelial cell @@ -46305,7 +46609,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of adipose tissue. - tmeehan + 2011-03-01T09:57:17Z mesenchymal stem cell of adipose mesenchymal stem cell of adipose tissue @@ -46336,7 +46640,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of liver. - tmeehan + 2011-03-01T09:58:51Z hepatic mesenchymal stem cell @@ -46377,11 +46681,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. - tmeehan + + 2011-03-02T01:19:27Z BTO:0001220 CALOHA:TS-0898 MESH:D012583 + Schwann cell @@ -46415,8 +46721,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell of the pancreas. - tmeehan + + 2011-03-02T02:40:41Z + stromal cell of pancreas @@ -46457,7 +46765,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the placenta. - tmeehan + 2011-03-02T03:21:30Z placental epithelial cell @@ -46499,8 +46807,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A blood vessel endothelial cell that is part of the retina. - tmeehan + + 2011-03-06T03:28:27Z + retinal blood vessel endothelial cell @@ -46540,7 +46850,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the bachiocephalic vasculature. - tmeehan + 2011-03-06T05:00:58Z smooth muscle cell of the brachiocephalic vasculature @@ -46576,7 +46886,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A vascular associated smooth muscle cell of the brain vasculature. - tmeehan + 2011-03-06T05:01:20Z smooth muscle cell of the brain vasculature @@ -46617,9 +46927,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle of the pulmonary artery. - tmeehan + + 2011-03-06T05:01:28Z BTO:0003336 + smooth muscle cell of the pulmonary artery @@ -46653,7 +46965,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the subclavian artery. - tmeehan + 2011-03-06T05:01:52Z smooth muscle cell of the subclavian artery @@ -46688,7 +47000,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Smooth muscle cell of the carotid artery. - tmeehan + 2011-03-06T05:01:56Z smooth muscle cell of the carotid artery @@ -46722,9 +47034,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + + 2011-03-06T05:46:39Z BTO:0004402 + bronchial smooth muscle cell @@ -46752,7 +47066,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the esophagus. - tmeehan + 2011-03-06T05:48:17Z smooth muscle cell of the esophagus @@ -46793,7 +47107,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the trachea. - tmeehan + 2011-03-06T05:50:28Z smooth muscle cell of trachea @@ -46828,7 +47142,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the uterus. - tmeehan + 2011-03-06T05:53:28Z uterine smooth muscle cell @@ -46870,7 +47184,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron of the raphe nuclei. - tmeehan + 2011-03-06T07:42:06Z raphe nuclei neuron @@ -46912,7 +47226,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron of the ventral spinal cord. - tmeehan + 2011-03-06T07:46:03Z neuron of the ventral spinal cord @@ -46953,10 +47267,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of skin. - tmeehan + + 2011-03-14T12:31:49Z BTO:0001255 CALOHA:TS-0935 + skin fibroblast @@ -46995,7 +47311,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + 2011-06-21T12:29:31Z epithelial cell of lower respiratory tract @@ -47030,7 +47346,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the anal column. - tmeehan + 2011-07-08T12:11:38Z epithelial cell of anal column @@ -47061,7 +47377,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the anal canal that is keratinized. This cell type is found towards the lower, rectal end of the anal canal. - tmeehan + 2011-07-08T02:08:40Z keratinized epithelial cell of the anal canal @@ -47096,7 +47412,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the endometrium. - tmeehan + 2011-07-08T03:54:08Z FMA:86489 glandular cell of endometrium @@ -47127,7 +47443,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the esophagus. - tmeehan + 2011-07-08T03:55:57Z FMA:86548 glandular cell of esophagus @@ -47170,7 +47486,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the large intestine. - tmeehan + 2011-07-08T04:03:01Z FMA:87194 glandular cell of the large intestine @@ -47207,7 +47523,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell that is part of the stomach. - tmeehan + 2011-07-11T01:20:35Z CALOHA:TS-1284 FMA:86554 @@ -47250,7 +47566,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A myocardial endocrine cell that is part of the atrium. - tmeehan + 2011-07-11T02:45:39Z FMA:83389 myocardial endocrine cell of atrium @@ -47275,7 +47591,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart. - tmeehan + 2011-07-11T03:15:38Z CPC cardiovascular progenitor cell @@ -47316,7 +47632,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells. - tmeehan + 2011-08-16T02:38:01Z retinal progenitor cell @@ -47353,7 +47669,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A skeletal muscle cell that is part of the tongue. - tmeehan + 2011-08-16T03:10:02Z tongue muscle cell @@ -47379,7 +47695,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuroblast derived from a neural crest cell. - tmeehan + 2011-08-22T09:24:15Z neural crest derived neuroblast @@ -47410,7 +47726,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A PP cell found in intestine. - tmeehan + 2011-09-27T11:59:01Z PP cell of intestine @@ -47517,7 +47833,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). - haendel + 2012-06-15T02:51:27Z scleroblast Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts) @@ -47555,7 +47871,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells. - haendel + 2012-06-27T08:27:35Z premigratory neural crest cell @@ -47573,7 +47889,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. - haendel + 2012-06-27T10:44:01Z prechondroblast @@ -47880,6 +48196,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endocrine cell that is part of the pancreas. + + pancreatic endocrine cell @@ -47912,7 +48230,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - dos + 2017-07-09T19:12:36Z visual system neuron @@ -47948,9 +48266,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation. - dos + + 2020-02-29T17:33:55Z + mural cell @@ -47984,7 +48304,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - dos + 2020-02-29T17:37:00Z microcirculation associated smooth muscle cell @@ -48127,7 +48447,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the small intestine. - + small intestine enteroendocrine cell enteroendocrine cell of small intestine @@ -48163,9 +48483,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte that resides in the lamina propria of the large intestine. - + + lamina propria lymphocyte of large intestine + This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. lymphocyte of large intestine lamina propria @@ -48200,7 +48522,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the large intestine. - + stromal cell of lamina propria of large intestine @@ -48235,7 +48557,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the small intestine. - + stromal cell of lamina propria of small intestine @@ -48265,7 +48587,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the small intestine. - + mesothelial cell of small intestine @@ -48295,7 +48617,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the colon. - + mesothelial cell of large intestine mesothelial cell of colon @@ -48332,7 +48654,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A macrophage that is located in the colon. - + macrophage of colon This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48369,7 +48691,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the colon. - + stromal cell of colon lamina propria stromal cell of lamina propria of colon @@ -48400,7 +48722,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the colon. - + colon enteroendocrine cell enteroendocrine cell of colon @@ -48436,7 +48758,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte that resides in the lamina propria of the small intestine. Lamina propria leukocytes and intraepithelial lymphocytes are the effector compartments of the gut mucosal immune system. Lymphocytes circulate through gut associated lymphoid tissues until recruitment by intestinal antigens. They are involved in the gut immune response. - + gastrointestinal tract small intestine (lamina propria) leukocyte small intestine lamina propria leukocyte small intestine lamina propria leukocyte (LPL) @@ -48479,7 +48801,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A macrophage that is located in the anorectum. - + macrophage of anorectum This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48516,7 +48838,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A T cell that is located in the anorectum. - + This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. T cell of anorectum @@ -48552,7 +48874,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is located in the anorectum. - + anorectum smooth muscle cell smooth muscle cell of anorectum @@ -48592,7 +48914,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the anorectum. - + stromal cell of anorectum lamina propria @@ -48628,7 +48950,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the anorectum. - + anorectum enteroendocrine cell enteroendocrine cell of anorectum @@ -48665,7 +48987,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stratified squamous epithelial cell that is part of the anal canal. - + anal canal stratified squamous epithelial cell This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48702,8 +49024,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell that is part of an endometrial gland. - 2021-11-30T16:13:30Z - + + 2021-11-30T16:13:30Z EFO:0010710 endometrial glandular epithelial cell @@ -48736,8 +49058,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a placenta. - 2021-12-13T13:53:01Z - + + 2021-12-13T13:53:01Z EFO:0010708 placental endothelial cell @@ -48775,8 +49097,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of a placenta. - 2021-12-13T13:56:42Z - + + 2021-12-13T13:56:42Z EFO:0010709 placental smooth muscle cell @@ -48814,8 +49136,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a hepatic portal vein. - 2021-12-13T14:01:05Z - + + 2021-12-13T14:01:05Z portal endothelial cell EFO:0010704 @@ -48854,8 +49176,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a uterus. - 2021-12-13T14:39:25Z - + + 2021-12-13T14:39:25Z EFO:0010711 uterine endothelial cell @@ -48893,8 +49215,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development. - 2022-02-21T15:39:10Z - + + 2022-02-21T15:39:10Z embryonic skeletal muscle fiber @@ -48930,8 +49252,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast located in the portal triad. Hepatic portal fibroblast are a non-parenchymal cell population located adjacent to bile duct epithelia in liver and are distinct from stellate cells. They differentiate into fibrogenic myofibroblasts during chronic injury states producing high levels of collagen. - 2022-03-17T12:00:44Z - + + 2022-03-17T12:00:44Z portal fibroblast hepatic portal fibroblast @@ -48963,7 +49285,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell that is part_of a bone marrow. - GOC:cjm + bone marrow stromal cell stromal cell of bone marrow @@ -48987,7 +49309,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mononuclear cell that is part_of a bone marrow. - GOC:cjm + bone marrow mononuclear cell mononuclear cell of bone marrow @@ -49064,6 +49386,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + cardiac endothelial cell @@ -49118,7 +49442,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A CNS neuron of the cerebral cortex. - + CL:0002609 BTO:0004102 FMA:84104 @@ -49356,7 +49680,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the epicardium. - + mesothelial cell of epicardium @@ -49384,7 +49708,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of upper back skin. - + fibroblast of upper back skin @@ -49412,7 +49736,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of skin of back. - + fibroblast of skin of back @@ -49440,7 +49764,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses. - + progenitor cell @@ -49470,7 +49794,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of skeletal muscle tissue. - + skeleton muscle fibroblast skeletal muscle fibroblast @@ -49501,7 +49825,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of the dermis. - + DMEC cell dermal microvascular endothelium cell dermal microvascular endothelial cell @@ -49641,7 +49965,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A CNS neuron of the forebrain. - tberardini + forebrain neuron neuron of the forebrain @@ -49676,7 +50000,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain. - tmeehan + 2010-05-25T01:36:34Z neutrophillic cytoplasm @@ -49711,7 +50035,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain. - tmeehan + 2009-12-22T04:23:25Z eosinophilic acidophilic cytoplasm @@ -49747,7 +50071,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions. - tmeehan + 2009-12-22T04:24:54Z basophilic cytoplasm @@ -49782,7 +50106,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions. - tmeehan + 2009-12-28T04:25:23Z polychromatophilic cytoplasm @@ -49817,7 +50141,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell. - tmeehan + 2009-12-23T10:53:24Z increased nucleus size @@ -49852,7 +50176,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin. - tmeehan + 2009-12-23T02:31:25Z reniform nucleus @@ -49913,8 +50237,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any serous secreting cell that is part of the tracheobronchial epithelium. - - 2020-05-07T16:03:27Z + + 2020-05-07T16:03:27Z serous cell of tracheobronchial tree tracheobronchial serous cell @@ -49944,10 +50268,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any chondrocyte that is part of the tracheobronchial tree. - - 2020-05-07T17:29:51Z + + + 2020-05-07T17:29:51Z chondrocyte of tracheobronchial tree + tracheobronchial chondrocyte @@ -49975,9 +50301,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of any blood vessel. - - 2020-07-21T12:42:48Z + + + 2020-07-21T12:42:48Z smooth muscle cell of blood vessel + blood vessel smooth muscle cell @@ -50011,9 +50339,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of the tracheobronchial tree. - - 2020-07-21T12:50:22Z + + + 2020-07-21T12:50:22Z smooth muscle cell of tracheobronchial tree + tracheobronchial smooth muscle cell @@ -50047,8 +50377,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the extrahepatic bile ducts, including the left and right hepatic duct, common hepatic duct, and common bile duct. They are columnar in shape, and have a large nuclear-to-cytoplasmic ratio relative to small/intrahepatic cholangiocytes. - - 2020-09-03T12:24:24Z + + 2020-09-03T12:24:24Z large bile duct cholangiocyte extrahepatic cholangiocyte @@ -50089,8 +50419,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid. - - 2020-09-09T13:56:47Z + + 2020-09-09T13:56:47Z EFO:0010705 periportal LSEC periportal hepatic sinusoidal endothelial cell @@ -50139,8 +50469,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid. - - 2020-09-10T12:38:29Z + + 2020-09-10T12:38:29Z EFO:0010706 central venous hepatic sinusoidal endothelial cell pericentral LSEC @@ -50232,6 +50562,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + lung neuroendocrine cell @@ -50259,6 +50591,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + lung ciliated cell @@ -50416,8 +50750,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of the large intestine. + FMA:15653 non-striated muscle fiber of large intestine + smooth muscle cell of large intestine @@ -50752,9 +51088,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell that is part of the epicardial fat. + FMA:261293 adipocyte of epicardial fat epicardial fat cell + epicardial adipocyte @@ -51156,11 +51494,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates. + BTO:000125 FMA:62911 LSEC endotheliocyte of hepatic sinusoid liver sinusoidal endothelial cell + endothelial cell of hepatic sinusoid @@ -51355,8 +51695,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the arteriole. + FMA:67760 KUPO:0001097 + endothelial cell of arteriole @@ -51396,11 +51738,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A blood vessel endothelial cell that is part of an arterial endothelium. + CL:0002542 BTO:0004758 FMA:67761 KUPO:0001095 arterial endothelial cell + endothelial cell of artery @@ -51434,7 +51778,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the venule. + FMA:67762 + endothelial cell of venule @@ -51476,7 +51822,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell that is part of the gallbladder. FMA:67780 - epithelial cell of gall bladder + epithelial cell of gallbladder @@ -51730,7 +52076,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the visceral peritoneum. + FMA:72143 + mesothelial cell of visceral peritoneum @@ -51764,9 +52112,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that is part of the skin of body. + CALOHA:TS-2374 FMA:72144 skin melanocyte + melanocyte of skin @@ -52123,7 +52473,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the visceral pleura. + FMA:86739 + mesothelial cell of visceral pleura @@ -52157,8 +52509,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the exocrine pancreas. + FMA:70986 exocrine pancreas cell + epithelial cell of exocrine pancreas @@ -52248,8 +52602,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + BTO:0001141 PAEC cell + pulmonary artery endothelial cell @@ -52585,29 +52941,29 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - Glandular cell of gall bladder epithelium. + Glandular cell of gallbladder epithelium. CALOHA:TS-1278 + gall bladder glandular cell gall bladder glandular cells - gallbladder glandular cell gallbladder glandular cells - gall bladder glandular cell + gallbladder glandular cell - Glandular cell of gall bladder epithelium. + Glandular cell of gallbladder epithelium. NPX:PDR - - gall bladder glandular cells - CALOHA:TS-1278 + + gall bladder glandular cell + FMA:7202 - gallbladder glandular cell + gall bladder glandular cells CALOHA:TS-1278 @@ -52749,10 +53105,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts. + BTO:0000028 CALOHA:TS-1242 exocrine pancreas glandular cell pancreas exocrine glandular cells + pancreas exocrine glandular cell @@ -52980,7 +53338,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any melanocyte that is part of a epidermis. - TermGenie + 2014-02-03T23:03:09Z CL:2000000 These cells are found primarily, but not exclusively, in primates including humans @@ -53018,7 +53376,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. - TermGenie + 2014-02-11T17:29:04Z CL:2000001 peripheral blood mononuclear cell @@ -53054,7 +53412,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any macroglial cell that is part of a brain. - TermGenie + 2014-03-28T21:35:27Z CL:2000005 brain macroglial cell @@ -53090,9 +53448,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any blood vessel endothelial cell that is part of a microvascular endothelium. - TermGenie + + 2014-06-04T15:07:42Z CL:2000008 + microvascular endothelial cell @@ -53126,7 +53486,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any blood vessel endothelial cell that is part of a dermis. - TermGenie + 2014-06-04T15:12:06Z CL:2000010 dermis blood vessel endothelial cell @@ -53162,7 +53522,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any skin fibroblast that is part of a skin of abdomen. - TermGenie + 2014-06-04T15:18:16Z CL:2000013 fibroblast of skin of abdomen @@ -53193,7 +53553,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any lung endothelial cell that is part of a microvascular endothelium. - TermGenie + 2014-06-04T16:00:56Z CL:2000016 lung microvascular endothelial cell @@ -53229,7 +53589,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any photoreceptor cell that is part of a compound eye. - TermGenie + 2014-06-24T23:16:45Z FBbt:00004211 CL:2000019 @@ -53267,7 +53627,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any native cell that is part of a inner cell mass. - TermGenie + 2014-06-24T23:16:53Z CL:2000020 inner cell mass cell @@ -53304,7 +53664,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any native cell that is part of a cardiac septum. - TermGenie + 2014-06-24T23:17:07Z CL:2000022 cardiac septum cell @@ -53340,7 +53700,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any oligodendrocyte that is part of a spinal cord. - TermGenie + 2014-06-25T00:23:50Z CL:2000025 spinal cord oligodendrocyte @@ -53376,7 +53736,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any neuron that is part of a central nervous system. - TermGenie + 2014-06-25T01:17:43Z CL:2000029 central nervous system neuron @@ -53412,7 +53772,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron that is part of a peripheral nervous system. - TermGenie + 2014-06-25T02:28:17Z CL:0000111 FMA:84664 @@ -53453,7 +53813,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a embryo. - TermGenie + 2014-07-09T00:12:00Z CL:2000042 embryonic fibroblast @@ -53490,7 +53850,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a brain. - TermGenie + 2014-07-09T00:24:53Z CL:2000044 brain microvascular endothelial cell @@ -53526,7 +53886,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any cardiac muscle cell that is part of a cardiac ventricle. - TermGenie + 2014-08-12T20:50:28Z CL:2000046 ventricular cardiac muscle cell @@ -53563,7 +53923,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any motor neuron that is part of a brainstem. - TermGenie + 2014-10-02T23:52:53Z CL:2000047 brainstem motor neuron @@ -53599,7 +53959,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a spleen. - TermGenie + 2014-10-06T18:58:47Z CL:2000051 splenic fibroblast @@ -53635,9 +53995,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any endothelial cell that is part of a spleen. - TermGenie + + 2014-10-06T19:06:04Z CL:2000053 + http://www.sciencellonline.com/site/productInformation.php?keyword=5500 splenic endothelial cell @@ -53672,7 +54034,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any dendritic cell that is part of a liver. - TermGenie + 2014-10-06T19:16:11Z hepatic dendritic cell CL:2000055 @@ -53710,7 +54072,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A trophoblast of placental villi. These cells fuse to form synctial trophoplast - the placental side of the interface between the placenta and maternal blood sinusoids in the decidua. - TermGenie + 2014-10-07T17:48:27Z BTO:0006119 BTO:0006208 @@ -53758,7 +54120,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any mesenchymal stem cell that is part of a placenta. - TermGenie + 2014-10-07T17:51:11Z CL:2000061 http://www.sciencellonline.com/site/productInformation.php?keyword=7140 @@ -53796,9 +54158,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any capillary endothelial cell that is part of a placenta. - TermGenie + + 2014-10-07T17:55:56Z CL:2000062 + http://www.ncbi.nlm.nih.gov/books/NBK53245/ placental villus capillary endothelial cell @@ -53833,7 +54197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a female gonad. - TermGenie + 2014-10-07T17:57:42Z CL:2000063 http://www.sciencellonline.com/site/productInformation.php?keyword=7330 @@ -53870,7 +54234,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any epithelial cell that is part of a female gonad. - TermGenie + 2014-10-07T17:59:13Z CL:2000064 http://www.sciencellonline.com/site/productInformation.php?keyword=7310 @@ -53907,9 +54271,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a cardiac ventricle. - TermGenie + + 2014-10-07T18:35:38Z CL:2000066 + http://www.sciencellonline.com/site/productInformation.php?keyword=6310 cardiac ventricle fibroblast @@ -53944,9 +54310,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a cardiac atrium. - TermGenie + + 2014-10-07T18:36:54Z CL:2000067 + http://www.sciencellonline.com/site/productInformation.php?keyword=6320 cardiac atrium fibroblast @@ -53981,7 +54349,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a pericardium. - TermGenie + 2014-10-07T18:38:06Z CL:2000068 http://www.sciencellonline.com/site/productInformation.php?keyword=6430 @@ -54018,7 +54386,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a gallbladder. - TermGenie + 2014-10-07T18:41:43Z CL:2000069 http://www.sciencellonline.com/site/productInformation.php?keyword=5430 @@ -54055,7 +54423,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a optic choroid. - TermGenie + 2014-10-07T18:50:43Z CL:2000070 http://www.sciencellonline.com/site/productInformation.php?keyword=6620 @@ -54093,7 +54461,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a adipose tissue. - TermGenie + 2014-10-07T22:13:45Z CL:2000072 http://www.sciencellonline.com/site/productInformation.php?keyword=7200 @@ -54130,8 +54498,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any migratory neural crest cell that is part of a cardiac neural crest. - TermGenie + 2014-11-05T01:18:43Z + cardiac neural crest cell CL:2000073 migratory cardiac neural crest cell @@ -54141,6 +54510,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any migratory neural crest cell that is part of a cardiac neural crest. GOC:TermGenie + + + + cardiac neural crest cell + PMID:33060096 + @@ -54166,7 +54541,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any leukocyte that is part of a spleen. - TermGenie + 2014-11-05T01:26:50Z CL:2000074 Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology. @@ -54203,7 +54578,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any mesenchymal stem cell of adipose tissue that is part of an abdomen. - TermGenie + 2014-12-02T19:10:34Z mesenchymal stem cell of abdominal adipose CL:2000080 @@ -54240,7 +54615,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any melanocyte of skin that is part of a skin of face. - TermGenie + 2014-12-02T19:10:40Z CL:2000081 melanocyte of skin of face @@ -54277,9 +54652,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a endometrial blood vessel. - TermGenie + + 2015-03-31T21:02:36Z CL:2000091 + endometrial microvascular endothelial cells @@ -54313,7 +54690,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast of lung that is part of a bronchus. - TermGenie + 2015-03-31T21:16:22Z CL:2000093 bronchus fibroblast of lung @@ -54350,7 +54727,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated epithelial cell of the esophagus. - CellBLAST + 2019-02-09T16:40:30Z CL:3000000 ciliated epithelial cell of esophagus @@ -54382,7 +54759,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Peripheral sensory neuron. - CellBLAST + 2019-02-25T19:34:33Z CL:3000004 peripheral sensory neuron @@ -54424,7 +54801,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to structures of telencephalic origins. - + ILX:0770100 IT projecting neuron @@ -54466,7 +54843,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to structures not derived from telencephalon. - + ILX:0770101 ET projecting neuron @@ -54508,7 +54885,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects axons locally rather than distantly. - + ILX:0770103 NP neuron @@ -54550,7 +54927,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to the thalamus. - + CT projecting neuron corticothalamic-projecting glutamatergic cortical neuron @@ -54587,7 +54964,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has an apical tree which is oriented parallel to the pia. This is unlike typical pyramidal neurons which have its apical dendrite aligned vertically. - + horizontal pyramidal neuron @@ -54622,7 +54999,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of interneuron that has two clusters of dendritic branches that originate directly from the soma and extend in opposite directions and axons that form a plexus which spreads widely. Compared to bipolar neurons, bitufted neurons have branching that occur close to the soma. - + ILX:0777212 bitufted neuron @@ -54664,7 +55041,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An interneuron that selectively innervates the axon initial segment of pyramidal cells. Their local axonal clusters are formed by high-frequency branching at shallow angles, often ramifying around, above or below their somata with a high bouton density. The characteristic terminal portions of the axon form short vertical rows of boutons, resembling a chandelier. Chandelier cells can be multipolar or bitufted. - + ILX:0777213 ChC @@ -54715,7 +55092,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has an apical tree which is oriented towards the white matter. - + inverted pyramidal neuron @@ -54751,7 +55128,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which lacks a tuft formation but extends small radial distances forming a star-like shape. - + stellate pyramidal neuron @@ -54787,7 +55164,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has a distinctive tuft formation, distal from the soma. - + tufted pyramidal neuron @@ -54823,7 +55200,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which lacks a clear tuft formation but extends to large radial distances. - + untufted pyramidal neuron @@ -54853,7 +55230,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron with soma located in the cerebral cortex. - + cerebral cortex pyramidal neuron @@ -54887,7 +55264,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that myelinates axonal processes. - + CL:0000328 myelinating glial cell @@ -54900,6 +55277,74 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + An interneuron that has double bouquet morphology. + + double bouquet cell + + + + + An interneuron that has double bouquet morphology. + PMID:15378039 + + + + + + + + + + + + + + + + + + + + + + + + + + A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli. + + somatosensory neuron + + + + + A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli. + PMID:22865660 + + + + @@ -54917,7 +55362,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any capillary endothelial cell that is part of a lung. - + 2021-11-23T02:31:40Z lung capillary endothelial cell pulmonary capillary endothelial cell @@ -54947,7 +55392,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte located in the vascular uvea and involved in photoprotection, regulation of oxidative damage and immune responses. - http://orcid.org/0000-0002-1773-2692 + 2022-01-20T12:59:06Z uveal melanocyte Cellular functions and extracellular interactions of choroidal melanocytes are distinct to skin melanocytes. They might have both neuroectodermal as well as mesectodermal origins. @@ -75535,7 +75980,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -75638,7 +76083,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -85932,18 +86377,18 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual GO:0008017 microtubule binding - - - - Binding to a microtubule, a filament composed of tubulin monomers. - GOC:krc - Reactome:R-HSA-9614343 Viral UL47:UL48 Proteins Bind HCMV Tegumented Virion to Host Microtuble and Dynein complexs + + + + Binding to a microtubule, a filament composed of tubulin monomers. + GOC:krc + @@ -87152,7 +87597,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -99767,7 +100212,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100053,7 +100498,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100118,7 +100563,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100188,7 +100633,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100384,7 +100829,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100483,7 +100928,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100645,7 +101090,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100983,7 +101428,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -104180,6 +104625,27 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process. + Wikipedia:Nociception + nociception + perception of physiological pain + biological_process + GO:0019233 + sensory perception of pain + + + + + The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process. + GOC:curators + + + + @@ -139455,6 +139921,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + @@ -160724,6 +161191,71 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal. + perception of pain, detection of chemical stimulus + perception of pain, sensory detection of chemical stimulus + perception of pain, sensory transduction of chemical stimulus + sensory detection of chemical stimulus during perception of pain + sensory transduction of chemical stimulus during perception of pain + biological_process + chemical nociception + GO:0050968 + detection of chemical stimulus involved in sensory perception of pain + + + + + The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal. + GOC:ai + + + + + chemical nociception + GOC:pr + + + + + + + + + The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). + Wikipedia:Touch + perception of touch + tactile sense + taction + tactition + biological_process + GO:0050975 + sensory perception of touch + + + + + The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). + GOC:ai + + + + @@ -166023,6 +166555,41 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. + biological_process + GO:0051930 + regulation of sensory perception of pain + + + + + Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. + GOC:ai + + + + @@ -183463,6 +184030,43 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal. + dph + 2019-09-13T13:48:47Z + biological_process + GO:0062149 + detection of stimulus involved in sensory perception of pain + + + + + The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal. + PMID:19837031 + + + + @@ -194516,6 +195120,30 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs. + https://github.com/geneontology/go-ontology/issues/22368 + pr + 2012-03-05T02:03:58Z + biological_process + GO:0097254 + renal tubular secretion + + + + + The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs. + GOC:rph + PMID:25287933 + Wikipedia:Renal_secretion#Secretion + + + + @@ -215795,7 +216423,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -240557,6 +241185,282 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. + sl + 2015-03-18T20:33:57Z + down regulation of nociception + down regulation of sensory perception of pain + down-regulation of nociception + down-regulation of sensory perception of pain + downregulation of nociception + downregulation of sensory perception of pain + negative regulation of nociception + down regulation of perception of physiological pain + down-regulation of perception of physiological pain + downregulation of perception of physiological pain + inhibition of nociception + inhibition of perception of physiological pain + inhibition of sensory perception of pain + negative regulation of perception of physiological pain + biological_process + GO:1904057 + negative regulation of sensory perception of pain + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. + GOC:TermGenie + GO_REF:0000058 + PMID:17167094 + + + + + down regulation of nociception + GOC:TermGenie + + + + + down regulation of sensory perception of pain + GOC:TermGenie + + + + + down-regulation of nociception + GOC:TermGenie + + + + + down-regulation of sensory perception of pain + GOC:TermGenie + + + + + downregulation of nociception + GOC:TermGenie + + + + + downregulation of sensory perception of pain + GOC:TermGenie + + + + + negative regulation of nociception + GOC:TermGenie + + + + + down regulation of perception of physiological pain + GOC:TermGenie + + + + + down-regulation of perception of physiological pain + GOC:TermGenie + + + + + downregulation of perception of physiological pain + GOC:TermGenie + + + + + inhibition of nociception + GOC:TermGenie + + + + + inhibition of perception of physiological pain + GOC:TermGenie + + + + + inhibition of sensory perception of pain + GOC:TermGenie + + + + + negative regulation of perception of physiological pain + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of sensory perception of pain. + sl + 2015-03-18T20:34:03Z + positive regulation of nociception + up regulation of nociception + up regulation of sensory perception of pain + up-regulation of nociception + up-regulation of sensory perception of pain + upregulation of nociception + upregulation of sensory perception of pain + activation of nociception + activation of perception of physiological pain + activation of sensory perception of pain + positive regulation of perception of physiological pain + up regulation of perception of physiological pain + up-regulation of perception of physiological pain + upregulation of perception of physiological pain + biological_process + GO:1904058 + positive regulation of sensory perception of pain + + + + + Any process that activates or increases the frequency, rate or extent of sensory perception of pain. + GOC:TermGenie + GO_REF:0000058 + PMID:17167094 + + + + + positive regulation of nociception + GOC:TermGenie + + + + + up regulation of nociception + GOC:TermGenie + + + + + up regulation of sensory perception of pain + GOC:TermGenie + + + + + up-regulation of nociception + GOC:TermGenie + + + + + up-regulation of sensory perception of pain + GOC:TermGenie + + + + + upregulation of nociception + GOC:TermGenie + + + + + upregulation of sensory perception of pain + GOC:TermGenie + + + + + activation of nociception + GOC:TermGenie + + + + + activation of perception of physiological pain + GOC:TermGenie + + + + + activation of sensory perception of pain + GOC:TermGenie + + + + + positive regulation of perception of physiological pain + GOC:TermGenie + + + + + up regulation of perception of physiological pain + GOC:TermGenie + + + + + up-regulation of perception of physiological pain + GOC:TermGenie + + + + + upregulation of perception of physiological pain + GOC:TermGenie + + + + @@ -277742,6 +278646,54 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + gamophytes + ncbi_taxonomy + Conjugatophyceae + Gamophyceae + Gamophyta + Zygnematophyceae + NCBITaxon:131209 + Zygnemophyceae + + + + + gamophytes + + + + + + Conjugatophyceae + + + + + + Gamophyceae + + + + + + Gamophyta + + + + + + Zygnematophyceae + + + + + @@ -277901,6 +278853,19 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:1445966 + Gnetidae + + + + @@ -278300,6 +279265,19 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:2684882 + Zygnematophycidae + + + + @@ -278426,7 +279404,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:3176 + Zygnematales + @@ -278860,6 +279845,33 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + Chlamydospermopsida + Gneticae + NCBITaxon:3372 + Gnetopsida + + + + + Chlamydospermopsida + + + + + + Gneticae + + + + + @@ -278877,7 +279889,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:3378 + Gnetales + @@ -336782,7 +337801,35 @@ Classes for population already exist in IDO ('organism population', I - + + + An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof. + insulin + INS + protein + PR:000009054 + Category=gene. + insulin gene translation product + + + + + An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof. + PRO:DNx + + + + + insulin + PRO:DAN + + + + + INS + PRO:DNx + + @@ -337400,6 +338447,34 @@ Classes for population already exist in IDO ('organism population', I + + + + + + A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide. + fam:INS + protein + PR:000045358 + Category=family. + insulin family protein + + + + + A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide. + PRO:DAN + + + + + fam:INS + PRO:DAN + + + + + @@ -343401,7 +344476,7 @@ Classes for population already exist in IDO ('organism population', I The part of the pancreas that is part of the endocrine system and is made up of islet cells, which produce insulin, glucagon and somatostatin. - GO:GO + GO:GO http://orcid.org/0000-0002-6601-2165 @@ -346802,12 +347877,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -355725,7 +356794,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -355738,6 +356806,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity. Anatomical system containing glands which regulates bodily functions though the secretion of hormones.[AAO] Multicellular organisms have complex endocrine systems, allowing responses to environmental stimuli, regulation of development, reproduction, and homeostasis. Nuclear receptors (NRs), a metazoan-specific family of ligand-activated transcription factors, play central roles in endocrine responses, as intermediates between signaling molecules and target genes. The NR family includes ligand-bound and orphan receptors, that is, receptors with no known ligand or for which there is no ligand Pocket. Understanding NR evolution has been further improved by comparison of several completed genomes, particularly those of deuterostomes and ecdysozoans. In contrast, evolution of NR ligands is still much debated. One hypothesis proposes that several independent gains and losses of ligand-binding ability in NRs occurred in protostomes and deuterostomes. A second hypothesis, pertaining to the NR3 subfamily (vertebrate steroid hormone receptors and estrogen related receptor), proposes that before the divergence of protostomes and deuterostomes, there was an ancestral steroid receptor (AncSR) that was ligand-activated and that orphan receptors secondarily lost the ability to bind a ligand. (...) Our analysis reveals that steroidogenesis has been independently elaborated in the 3 main bilaterian lineages (...).[well established][VHOG] @@ -357635,7 +358704,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -357648,11 +358716,13 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that has as its parts the organs concerned with reproduction. consider splitting genitalia from reproductive system Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO] Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG] + 2022-06-10T18:22:34Z AAO:0010258 BILA:0000103 BTO:0000081 @@ -357679,12 +358749,12 @@ Classes for population already exist in IDO ('organism population', I Wikipedia:Reproductive_system XAO:0000142 ZFA:0000632 + genital system + genitalia uberon Geschlechtsorgan animal reproductive system - genital system genital tract - genitalia organa genitalia reproductive tissue reproductive tract @@ -357731,21 +358801,21 @@ Classes for population already exist in IDO ('organism population', I - - Geschlechtsorgan - BTO:0000081 + + genitalia + - animal reproductive system + Geschlechtsorgan BTO:0000081 - genitalia - + animal reproductive system + BTO:0000081 @@ -358604,7 +359674,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -358617,6 +359686,7 @@ Classes for population already exist in IDO ('organism population', I + Functional system which consists of structures involved in respiration. @@ -358800,7 +359870,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -358813,6 +359882,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO] digestive @@ -358883,15 +359953,15 @@ Classes for population already exist in IDO ('organism population', I - + - + - + @@ -358901,7 +359971,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -358910,19 +359980,7 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - - - The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.. + The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here @@ -358930,6 +359988,7 @@ Classes for population already exist in IDO ('organism population', I Evolution of vertebrate renal anatomy appears quite conservative when compared, for example, to evolution of respiratory and cardiovascular systems in vertebrates. Major anatomical changes in vertebrates kidneys separate those of birds and mammals from kidneys of lower vertebrates. General increase in animal size from fish to mammals is reflected by an increase in total number of nephrons per kidney, rather than by constant change in tubular dimensions.[well established][VHOG] In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels This definition is inclusive of the organs of the vertebrate renal system, as well as the Malpighian tubules of insects, and allows for future incorporation of structures such as the antennal glands of crustaceans + excretory system AAO:0010257 BILA:0000015 BTO:0001244 @@ -358958,8 +360017,6 @@ Classes for population already exist in IDO ('organism population', I XAO:0000143 ZFA:0000163 galen:UrinaryTract - excretory system - renal system systema urinaria systema urinarium urinary system @@ -358977,7 +360034,7 @@ Classes for population already exist in IDO ('organism population', I - The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.. + The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. DOI:10.1371/journal.pone.0099864 GO:0072001 @@ -359030,12 +360087,6 @@ Classes for population already exist in IDO ('organism population', I UMLS:C1508753 ncithesaurus:Urinary_System - - - - renal system - GO:0001977 - @@ -359090,6 +360141,7 @@ Classes for population already exist in IDO ('organism population', I + Organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]. the cardiovascular system and the lymphatic system are parts of the circulatory system @@ -359457,6 +360509,7 @@ Classes for population already exist in IDO ('organism population', I + The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]. A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO] @@ -360177,6 +361230,7 @@ Classes for population already exist in IDO ('organism population', I + The sensory system for the sense of taste. The sensory system for the sense of taste[NLXANAT:090803]. The sensory system used for the sense of taste.[AAO] @@ -368835,7 +369889,7 @@ Classes for population already exist in IDO ('organism population', I - An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO] In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] @@ -368915,7 +369969,7 @@ Classes for population already exist in IDO ('organism population', I - An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. GO:0031016 @@ -370945,6 +371999,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system. Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO] @@ -373776,6 +374831,12 @@ Classes for population already exist in IDO ('organism population', I + + + + + + The subclavian artery that supplies the left pectoral appendage. in humans, branches off the arch of aorta @@ -387845,6 +388906,7 @@ Classes for population already exist in IDO ('organism population', I + @@ -391461,12 +392523,11 @@ Classes for population already exist in IDO ('organism population', I - + The sensory system subserving the sense of vision. - The sensory system used for sight.[AAO] UBERON:0007036 AAO:0000632 @@ -391526,6 +392587,12 @@ Classes for population already exist in IDO ('organism population', I + + + + + + Sensory system responsible for the perception of spatial orientation and auditory stimuli. The sensory system used for balance and hearing.[AAO] AAO:0000631 @@ -392061,7 +393128,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -392113,8 +393180,8 @@ Classes for population already exist in IDO ('organism population', I XAO:0000135 ZFA:0000208 galen:Gallbladder + cholecyst gall bladder - gallbladder uberon vesica biliaris vesica fellea @@ -392125,7 +393192,7 @@ Classes for population already exist in IDO ('organism population', I Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) - gall bladder + gallbladder https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg @@ -392135,19 +393202,6 @@ Classes for population already exist in IDO ('organism population', I BTO - - - - - - - - - - MA - ZFA - cjm - @@ -392230,8 +393284,8 @@ Classes for population already exist in IDO ('organism population', I - gallbladder - FMA:7202 + cholecyst + WikipediaVersioned:Gallbladder&oldid=1092217922 @@ -394623,6 +395677,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the muscular and skeletal systems. Anatomical system that provides locomotion and physical support to the organism.[AAO] There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG] @@ -395773,6 +396828,7 @@ Classes for population already exist in IDO ('organism population', I + Organ system subdivision that consists of the organs and ducts that are involved in the production and transportation of bile. In most species this is the gallbladder and the bile ducts (biliary tree). FMA:79646 @@ -396840,7 +397896,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -396933,6 +397989,12 @@ Classes for population already exist in IDO ('organism population', I notochord http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png + + + + + PMID:15890825 + @@ -397271,6 +398333,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]. CALOHA:TS-2057 EHDAA2:0002225 @@ -400521,6 +401584,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that is involved in the production of hematopoietic cells. Anatomical system that consists of the blood and blood forming tissues.[AAO] Zebrafish developmental hematopoiesis shows close correspondence to the development of the mammalian hematopoietic system and is regulated by conserved molecular pathways.[well established][VHOG] @@ -401185,6 +402249,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies. The antibody-based immune system defined by the presence of the major histocompatibility complex (MHC), T cell receptor (TCR), B cell receptor (BCR) or recombination activating genes (RAGs) is known beginning from jawed fishes.[well established][VHOG] @@ -401790,6 +402855,7 @@ Classes for population already exist in IDO ('organism population', I + Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle. (...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG] UBERON:0007029 @@ -402235,6 +403301,7 @@ Classes for population already exist in IDO ('organism population', I + The part of the digestive system that contains the liver and the biliary system. System responsible for the production and movement of bile[ZFIN:curator]. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [GO:0061008] @@ -410427,7 +411494,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -410437,7 +411504,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -428540,28 +429607,17 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - - - + + - - + + The sensory system for the sense of touch and pain. @@ -428573,12 +429629,11 @@ Classes for population already exist in IDO ('organism population', I Wikipedia:Somatosensory_system neuronames:2887 somatic sensory system - somatosensory system system for detection of somatic senses uberon UBERON:0003942 - somatic sensory system + somatosensory system @@ -428604,12 +429659,6 @@ Classes for population already exist in IDO ('organism population', I EMAPA:37954 MA:th - - - - somatosensory system - NLXANAT:090818 - @@ -431572,12 +432621,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - The external genitalia are the outer sex organs, such as the penis or vulva in mammals. FMA:45643 SCTID:362207005 @@ -433394,10 +434437,10 @@ Classes for population already exist in IDO ('organism population', I UMLS:C1708179 gall bladder involuntary muscle gall bladder non-striated muscle + gall bladder smooth muscle gall bladder smooth muscle tissue gallbladder involuntary muscle gallbladder non-striated muscle - gallbladder smooth muscle gallbladder smooth muscle tissue involuntary muscle of gall bladder involuntary muscle of gallbladder @@ -433410,7 +434453,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary smooth muscle UBERON:0004240 - gall bladder smooth muscle + gallbladder smooth muscle @@ -433439,31 +434482,25 @@ Classes for population already exist in IDO ('organism population', I - gall bladder smooth muscle tissue - OBOL:automatic - - - - - gallbladder involuntary muscle + gall bladder smooth muscle OBOL:automatic - gallbladder non-striated muscle + gall bladder smooth muscle tissue OBOL:automatic - gallbladder smooth muscle + gallbladder involuntary muscle OBOL:automatic - gallbladder smooth muscle tissue + gallbladder non-striated muscle OBOL:automatic @@ -436507,6 +437544,7 @@ Classes for population already exist in IDO ('organism population', I + Sum of all sensory systems in an organism. note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs FMA:78499 @@ -441526,8 +442564,8 @@ Classes for population already exist in IDO ('organism population', I MA:0001633 NCIT:C49228 UMLS:C1708175 + gall bladder lamina propria gall bladder lamina propria mucosa - gallbladder lamina propria gallbladder lamina propria mucosa lamina propria mucosa of gall bladder lamina propria mucosa of gallbladder @@ -441536,7 +442574,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary lamina propria UBERON:0004781 - gall bladder lamina propria + gallbladder lamina propria @@ -441565,19 +442603,13 @@ Classes for population already exist in IDO ('organism population', I - gall bladder lamina propria mucosa + gall bladder lamina propria OBOL:automatic - gallbladder lamina propria - OBOL:automatic - - - - - gallbladder lamina propria mucosa + gall bladder lamina propria mucosa OBOL:automatic @@ -441731,8 +442763,8 @@ Classes for population already exist in IDO ('organism population', I FMA:14659 MA:0001634 SCTID:362197006 + gall bladder serosa gall bladder serous membrane - gallbladder serosa gallbladder serous membrane serosa of gall bladder serosa of gallbladder @@ -441744,7 +442776,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary serosa UBERON:0004783 - gall bladder serosa + gallbladder serosa @@ -441755,13 +442787,7 @@ Classes for population already exist in IDO ('organism population', I - gall bladder serous membrane - OBOL:automatic - - - - - gallbladder serosa + gall bladder serosa OBOL:automatic @@ -458677,7 +459703,7 @@ Classes for population already exist in IDO ('organism population', I body hair or bristle - GO:GO + GO:GO @@ -459629,12 +460655,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -459658,22 +460678,12 @@ Classes for population already exist in IDO ('organism population', I EHDAA:3047 EMAPA:16713 XAO:0004205 + gall bladder primordium uberon UBERON:0006242 - gall bladder primordium + gallbladder primordium - - - - - - - - - - cjm - @@ -504909,40 +505919,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - genitalia - reproductive system - uberon - UBERON:3011048 - genital system - - - - - Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - XAO:0000142 - https://www.merriam-webster.com/dictionary/genitalia - - - - - This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - http://purl.obolibrary.org/obo/aao.owl - - - - @@ -506136,6 +507112,43 @@ Classes for population already exist in IDO ('organism population', I + + + + + + + + + + + + + + + + + + + + + + An anatomical system that eliminates waste products that arise as a result of metabolic activity. + http://orcid.org/0000-0002-6095-8718 + 2022-05-25T18:21:29Z + uberon + UBERON:8450002 + excretory system + + + + + An anatomical system that eliminates waste products that arise as a result of metabolic activity. + GO:0007588 + + + + @@ -506611,6 +507624,21 @@ Classes for population already exist in IDO ('organism population', I + + + + + + + + + + + + + + + @@ -506944,6 +507972,36 @@ Classes for population already exist in IDO ('organism population', I only in species that have a stomach + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/pato-simple.json b/pato-simple.json index 832298e..85746d1 100644 --- a/pato-simple.json +++ b/pato-simple.json @@ -11268,10 +11268,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2022-08-10" + "val": "2022-08-31" } ], - "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-10/pato-simple.json" + "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato-simple.json" }, "nodes": [ { diff --git a/pato-simple.obo b/pato-simple.obo index 8a12ad0..bb5f4f0 100644 --- a/pato-simple.obo +++ b/pato-simple.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2022-08-10/pato-simple.owl +data-version: pato/releases/2022-08-31/pato-simple.owl subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" @@ -22,7 +22,7 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of phen property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And Trait Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: IAO:0000700 PATO:0000001 -property_value: owl:versionInfo "2022-08-10" xsd:string +property_value: owl:versionInfo "2022-08-31" xsd:string [Term] id: PATO:0000000 diff --git a/pato-simple.owl b/pato-simple.owl index 9b301b3..ba53cc4 100644 --- a/pato-simple.owl +++ b/pato-simple.owl @@ -14,14 +14,14 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of phenotypic qualities (properties, attributes or characteristics). PATO - the Phenotype And Trait Ontology quality 1.2 - 2022-08-10 + 2022-08-31 @@ -782,7 +782,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. OBSOLETE. q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + PATOC:CJM @@ -804,7 +804,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. OBSOLETE. q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + PATOC:CJM @@ -827,7 +827,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - PATOC:cjm + PATOC:cjm Wikipedia:Association_(statistics) @@ -848,7 +848,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. - PATOC:CJM + PATOC:CJM @@ -944,7 +944,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + PATOC:CJM @@ -965,7 +965,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - PATOC:cjm + PATOC:cjm Wikipedia:Association_(statistics) @@ -1035,7 +1035,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. - PATOC:CJM + PATOC:CJM @@ -1057,7 +1057,7 @@ Association is weaker than correlation or proportionality. These relations may b OBSOLETE. q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + PATOC:CJM @@ -1328,7 +1328,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra. - PATOC:cjm + PATOC:cjm @@ -1830,7 +1830,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -2305,7 +2305,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual reactivity - GOC:CJM + GOC:CJM @@ -3029,7 +3029,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. - PATOC:JE + PATOC:JE @@ -3070,7 +3070,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent. - PATOC:CJM + PATOC:CJM PATOC:GVG @@ -5050,7 +5050,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A quality of a process which ends earlier than the natural end time or reference process. - PATOC:LC + PATOC:LC @@ -5568,7 +5568,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -5610,7 +5610,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -7422,7 +7422,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles. - PATOC:CJM + PATOC:CJM PATOC:GVG @@ -8167,7 +8167,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality of a process which starts later than the natural start time or the reference process. - PATOC:LC + PATOC:LC @@ -10258,7 +10258,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 PATOC:mb @@ -13701,7 +13701,7 @@ See https://github.com/pato-ontology/pato/issues/331. A rate which is relatively low. - PATO:GVG + PATO:GVG @@ -13725,7 +13725,7 @@ See https://github.com/pato-ontology/pato/issues/331. A rate which is relatively high. - PATO:GVG + PATO:GVG @@ -14635,7 +14635,7 @@ See https://github.com/pato-ontology/pato/issues/331. A size quality inhering in a bearer by virtue of the bearer's being abnormally small. - Answers.com:Answers.com + Answers.com:Answers.com @@ -15533,7 +15533,7 @@ See https://github.com/pato-ontology/pato/issues/331. A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -16987,7 +16987,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. - PATO:GVG + PATO:GVG @@ -17275,7 +17275,7 @@ See https://github.com/pato-ontology/pato/issues/331. An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -17297,7 +17297,7 @@ See https://github.com/pato-ontology/pato/issues/331. An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -19398,7 +19398,7 @@ See https://github.com/pato-ontology/pato/issues/331. A reflective quality restricted to a particular wavelength. - PATOC:cjm + PATOC:cjm @@ -19577,7 +19577,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. - PATO:GVG + PATO:GVG @@ -19775,7 +19775,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. - PATO:GVG + PATO:GVG @@ -19795,7 +19795,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. - PATO:GVG + PATO:GVG @@ -21992,7 +21992,7 @@ See https://github.com/pato-ontology/pato/issues/331. A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light. - biology-online:biology-online + biology-online:biology-online @@ -22071,7 +22071,7 @@ See https://github.com/pato-ontology/pato/issues/331. A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor. - chemicool:chemicool + chemicool:chemicool @@ -22091,7 +22091,7 @@ See https://github.com/pato-ontology/pato/issues/331. A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. - chemicool:chemicool + chemicool:chemicool @@ -22110,7 +22110,7 @@ See https://github.com/pato-ontology/pato/issues/331. An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. - chemicool:chemicool + chemicool:chemicool @@ -22129,7 +22129,7 @@ See https://github.com/pato-ontology/pato/issues/331. An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions. - chemicool:chemicool + chemicool:chemicool @@ -22338,7 +22338,7 @@ See https://github.com/pato-ontology/pato/issues/331. A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell. - GO:GO + GO:GO @@ -22358,7 +22358,7 @@ See https://github.com/pato-ontology/pato/issues/331. A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell. - GO:GO + GO:GO @@ -22415,7 +22415,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's components no longer being in a single contiguous unit. - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 @@ -23008,7 +23008,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's being present in two copies. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -23093,7 +23093,7 @@ See https://github.com/pato-ontology/pato/issues/331. A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -23113,7 +23113,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -23149,7 +23149,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness. - Answers.com:Answers.com + Answers.com:Answers.com @@ -23188,7 +23188,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -23213,7 +23213,7 @@ See https://github.com/pato-ontology/pato/issues/331. Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. PATOC:GVG - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 @@ -23389,7 +23389,7 @@ See https://github.com/pato-ontology/pato/issues/331. The rate or speed of the change in size of an individual entity or change in number of a population. https://orcid.org/0000-0002-9900-7880 - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 @@ -23815,7 +23815,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. - PATOC:cjm + PATOC:cjm @@ -24146,7 +24146,7 @@ See https://github.com/pato-ontology/pato/issues/331. A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface. - PATOC:cjm + PATOC:cjm @@ -24395,7 +24395,7 @@ See https://github.com/pato-ontology/pato/issues/331. A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -24417,7 +24417,7 @@ See https://github.com/pato-ontology/pato/issues/331. A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -24440,7 +24440,7 @@ See https://github.com/pato-ontology/pato/issues/331. A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -24526,7 +24526,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity toward an external stimulus which is higher than normal/average. - PATO:GVG + PATO:GVG @@ -24551,7 +24551,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity toward an external stimulus which is lower than normal/average. - PATO:GVG + PATO:GVG @@ -24575,7 +24575,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity of a process which is higher than normal or average. - PATO:GVG + PATO:GVG @@ -24599,7 +24599,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity of a process which is lower than normal or average. - PATO:GVG + PATO:GVG @@ -24622,7 +24622,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity of occurrent to oxygen which is higher than normal or average. - PATO:GVG + PATO:GVG @@ -24645,7 +24645,7 @@ See https://github.com/pato-ontology/pato/issues/331. A sensitivity of a process to oxygen which is lower than normal or average. - PATO:GVG + PATO:GVG @@ -24678,7 +24678,7 @@ See https://github.com/pato-ontology/pato/issues/331. The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. - PATOC:CJM + PATOC:CJM @@ -24801,7 +24801,7 @@ See https://github.com/pato-ontology/pato/issues/331. A mass which is lower than normal or average. - PATO:GVG + PATO:GVG @@ -24825,7 +24825,7 @@ See https://github.com/pato-ontology/pato/issues/331. A mass which is higher than normal or average. - PATO:GVG + PATO:GVG @@ -24939,7 +24939,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts. - PATO:GVG + PATO:GVG @@ -25031,7 +25031,7 @@ See https://github.com/pato-ontology/pato/issues/331. A pressure which is relatively low. - PATO:GVG + PATO:GVG @@ -25053,7 +25053,7 @@ See https://github.com/pato-ontology/pato/issues/331. A pressure which is relatively high. - PATO:GVG + PATO:GVG @@ -25076,7 +25076,7 @@ See https://github.com/pato-ontology/pato/issues/331. A permeability which is relatively high. - PATO:GVG + PATO:GVG @@ -25099,7 +25099,7 @@ See https://github.com/pato-ontology/pato/issues/331. A permeability which is relatively low. - PATO:GVG + PATO:GVG @@ -25143,7 +25143,7 @@ See https://github.com/pato-ontology/pato/issues/331. A contractility which is relatively high. - PATO:GVG + PATO:GVG @@ -25166,7 +25166,7 @@ See https://github.com/pato-ontology/pato/issues/331. A contractility which is relatively low. - PATO:GVG + PATO:GVG @@ -25207,7 +25207,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability which is relatively low. - PATO:GVG + PATO:GVG @@ -25229,7 +25229,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability which is relatively high. - PATO:GVG + PATO:GVG @@ -25276,7 +25276,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change. - PATO:GVG + PATO:GVG @@ -25298,7 +25298,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability of rate which is relatively high. - PATO:GVG + PATO:GVG @@ -25320,7 +25320,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability of rate which is relatively low. - PATO:GVG + PATO:GVG @@ -25361,7 +25361,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity. - PATO:GVG + PATO:GVG @@ -25401,7 +25401,7 @@ See https://github.com/pato-ontology/pato/issues/331. A curvature which is relatively high. - PATO:GVG + PATO:GVG @@ -25422,7 +25422,7 @@ See https://github.com/pato-ontology/pato/issues/331. A curvature which is relatively low. - PATO:GVG + PATO:GVG @@ -25484,7 +25484,7 @@ See https://github.com/pato-ontology/pato/issues/331. A depth quality which is relatively high. - PATO:GVG + PATO:GVG @@ -25629,7 +25629,7 @@ See https://github.com/pato-ontology/pato/issues/331. A life span which is relatively high. - PATO:GVG + PATO:GVG @@ -25650,7 +25650,7 @@ See https://github.com/pato-ontology/pato/issues/331. A life span which is relatively low. - PATO:GVG + PATO:GVG @@ -25785,7 +25785,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change. - PATO:GVG + PATO:GVG @@ -25807,7 +25807,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability of color which is relatively high. - PATO:GVG + PATO:GVG @@ -25829,7 +25829,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability of color which is relatively low. - PATO:GVG + PATO:GVG @@ -25849,7 +25849,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. - PATO:GVG + PATO:GVG @@ -25869,7 +25869,7 @@ See https://github.com/pato-ontology/pato/issues/331. A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. - PATO:GVG + PATO:GVG @@ -25923,7 +25923,7 @@ See https://github.com/pato-ontology/pato/issues/331. A tonicity which is relatively high. - PATO:GVG + PATO:GVG @@ -25946,7 +25946,7 @@ See https://github.com/pato-ontology/pato/issues/331. A tonicity which is relatively low. - PATO:GVG + PATO:GVG @@ -25989,7 +25989,7 @@ See https://github.com/pato-ontology/pato/issues/331. A turgor which is relatively low. - PATO:GVG + PATO:GVG @@ -26012,7 +26012,7 @@ See https://github.com/pato-ontology/pato/issues/331. A turgor which is relatively high. - PATO:GVG + PATO:GVG @@ -26111,7 +26111,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality. - PATO:GVG + PATO:GVG @@ -26132,7 +26132,7 @@ See https://github.com/pato-ontology/pato/issues/331. A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. - PATO:GVG + PATO:GVG @@ -26153,7 +26153,7 @@ See https://github.com/pato-ontology/pato/issues/331. A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. - PATO:GVG + PATO:GVG @@ -26329,7 +26329,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable. - PATO:GVG + PATO:GVG @@ -26349,7 +26349,7 @@ See https://github.com/pato-ontology/pato/issues/331. A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. - PATO:GVG + PATO:GVG @@ -26369,7 +26369,7 @@ See https://github.com/pato-ontology/pato/issues/331. A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. - PATO:GVG + PATO:GVG @@ -26619,7 +26619,7 @@ See https://github.com/pato-ontology/pato/issues/331. An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. - PATO:GVG + PATO:GVG @@ -26835,7 +26835,7 @@ See https://github.com/pato-ontology/pato/issues/331. A solubility which is relatively high. - PATO:GVG + PATO:GVG @@ -26859,7 +26859,7 @@ See https://github.com/pato-ontology/pato/issues/331. A solubility which is relatively low. - PATO:GVG + PATO:GVG @@ -26882,7 +26882,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface. - Dictionary.com:Dictionary.com + Dictionary.com:Dictionary.com @@ -28015,7 +28015,7 @@ See https://github.com/pato-ontology/pato/issues/331. A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity. - PATOC:cjm + PATOC:cjm @@ -28036,7 +28036,7 @@ See https://github.com/pato-ontology/pato/issues/331. A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances. - GO:GO + GO:GO @@ -28264,7 +28264,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. - PATOC:cjm + PATOC:cjm @@ -28327,7 +28327,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous. - PATOC:cjm + PATOC:cjm @@ -29388,7 +29388,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. - die.net:die.net + die.net:die.net @@ -30532,7 +30532,7 @@ See https://github.com/pato-ontology/pato/issues/331. A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). - biology-online:biology-online + biology-online:biology-online @@ -30834,7 +30834,7 @@ See https://github.com/pato-ontology/pato/issues/331. An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself. - die.net:die.net + die.net:die.net @@ -30986,7 +30986,7 @@ See https://github.com/pato-ontology/pato/issues/331. A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. - PATOC:cjm + PATOC:cjm @@ -31101,7 +31101,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue. - PATOC:cjm + PATOC:cjm @@ -31226,7 +31226,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter. - PATOC:cjm + PATOC:cjm @@ -31313,7 +31313,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. - PATOC:CJM + PATOC:CJM @@ -31356,7 +31356,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection. - PATOC:cjm + PATOC:cjm @@ -31399,7 +31399,7 @@ See https://github.com/pato-ontology/pato/issues/331. A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug. - PATOC:CJM + PATOC:CJM @@ -31882,7 +31882,7 @@ See https://github.com/pato-ontology/pato/issues/331. The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATOC:CJM + PATOC:CJM @@ -31979,7 +31979,7 @@ See https://github.com/pato-ontology/pato/issues/331. A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part. - PATOC:cjm + PATOC:cjm @@ -32266,7 +32266,7 @@ See https://github.com/pato-ontology/pato/issues/331. A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. - PATOC:CJM + PATOC:CJM @@ -32722,7 +32722,7 @@ See https://github.com/pato-ontology/pato/issues/331. A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels. - PATOC:JE + PATOC:JE @@ -33510,7 +33510,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides. - url:http://www.oed.com/ + url:http://www.oed.com/ @@ -33647,7 +33647,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality that inheres in an entire organism or part of an organism. - PATOC:CJM + PATOC:CJM @@ -33724,7 +33724,7 @@ See https://github.com/pato-ontology/pato/issues/331. The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. - PATOC:CJM + PATOC:CJM @@ -33753,7 +33753,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. - PATOC:CJM + PATOC:CJM @@ -33779,7 +33779,7 @@ See https://github.com/pato-ontology/pato/issues/331. The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. - PATOC:CJM + PATOC:CJM @@ -33807,7 +33807,7 @@ See https://github.com/pato-ontology/pato/issues/331. The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATOC:CJM + PATOC:CJM @@ -33847,7 +33847,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. - PATOC:CJM + PATOC:CJM @@ -33887,7 +33887,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. - PATOC:CJM + PATOC:CJM @@ -33915,7 +33915,7 @@ See https://github.com/pato-ontology/pato/issues/331. A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. - PATOC:CJM + PATOC:CJM @@ -33942,7 +33942,7 @@ See https://github.com/pato-ontology/pato/issues/331. A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. - PATOC:CJM + PATOC:CJM @@ -34022,7 +34022,7 @@ See https://github.com/pato-ontology/pato/issues/331. A texture quality that exists through a liquid cover on the surface of the bearer. - Wikipedia:Wikipedia + Wikipedia:Wikipedia @@ -34385,7 +34385,7 @@ See https://github.com/pato-ontology/pato/issues/331. A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards. - PATOC:cjm + PATOC:cjm @@ -35312,7 +35312,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions. - Wikipedia:Wikipedia + Wikipedia:Wikipedia @@ -35405,7 +35405,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below. - PATOC:CJM + PATOC:CJM @@ -35457,7 +35457,7 @@ See https://github.com/pato-ontology/pato/issues/331. A broken quality inhering in a bearer by virtue of the bearer's being separated into two contiguous wholes. - PATOC:CJM + PATOC:CJM @@ -35499,7 +35499,7 @@ See https://github.com/pato-ontology/pato/issues/331. A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more. - PATOC:CJM + PATOC:CJM @@ -35566,7 +35566,7 @@ See https://github.com/pato-ontology/pato/issues/331. The period before death of the organism. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -36075,7 +36075,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection. - PATO:GVG + PATO:GVG @@ -36190,7 +36190,7 @@ See https://github.com/pato-ontology/pato/issues/331. Perforated like a sieve. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -36700,7 +36700,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays. - Wikipedia:Wikipedia + Wikipedia:Wikipedia @@ -36722,7 +36722,7 @@ See https://github.com/pato-ontology/pato/issues/331. A radiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation. - Wikipedia:Wikipedia + Wikipedia:Wikipedia @@ -37521,7 +37521,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity. - PATO:GVG + PATO:GVG @@ -37626,7 +37626,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -37690,7 +37690,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity. - PATOC:JH + PATOC:JH @@ -37711,7 +37711,7 @@ See https://github.com/pato-ontology/pato/issues/331. Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds). - PATOC:JH + PATOC:JH @@ -37732,7 +37732,7 @@ See https://github.com/pato-ontology/pato/issues/331. Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds). - PATOC:JH + PATOC:JH @@ -37754,7 +37754,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole. - PATOC:JH + PATOC:JH @@ -37776,7 +37776,7 @@ See https://github.com/pato-ontology/pato/issues/331. Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole. - PATOC:JH + PATOC:JH @@ -37797,7 +37797,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole. - PATOC:JH + PATOC:JH @@ -37819,7 +37819,7 @@ See https://github.com/pato-ontology/pato/issues/331. The ease of distortion of the electron cloud of a molecular entity by an electric field. - PATOC:JH + PATOC:JH @@ -37841,7 +37841,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - PATOC:JH + PATOC:JH @@ -37864,7 +37864,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - PATOC:JH + PATOC:JH @@ -37886,7 +37886,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. - PATOC:JH + PATOC:JH @@ -37908,7 +37908,7 @@ See https://github.com/pato-ontology/pato/issues/331. A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. - PATOC:JH + PATOC:JH @@ -37931,7 +37931,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge. - PATOC:JH + PATOC:JH @@ -37954,7 +37954,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. - PATOC:JH + PATOC:JH @@ -37976,7 +37976,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. - PATOC:JH + PATOC:JH @@ -37999,7 +37999,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality that describes the power of an atom to attract electrons to itself . - PATOC:JH + PATOC:JH @@ -38041,7 +38041,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat. - PATOC:JH + PATOC:JH @@ -38062,7 +38062,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state. - PATOC:JH + PATOC:JH @@ -38175,7 +38175,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge. - Wikipedia:Wikipedia + Wikipedia:Wikipedia @@ -38600,7 +38600,7 @@ See https://github.com/pato-ontology/pato/issues/331. An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V. - PATOC:JE + PATOC:JE @@ -38621,7 +38621,7 @@ See https://github.com/pato-ontology/pato/issues/331. An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L. - PATOC:JE + PATOC:JE @@ -38841,7 +38841,7 @@ See https://github.com/pato-ontology/pato/issues/331. A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. - PATOC:JE + PATOC:JE @@ -39278,7 +39278,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. - PATOC:CVS + PATOC:CVS @@ -39301,7 +39301,7 @@ See https://github.com/pato-ontology/pato/issues/331. Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels. - PATOC:JE + PATOC:JE @@ -39323,7 +39323,7 @@ See https://github.com/pato-ontology/pato/issues/331. A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps. - PATOC:WD + PATOC:WD @@ -39344,7 +39344,7 @@ See https://github.com/pato-ontology/pato/issues/331. A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp. - PATOC:WD + PATOC:WD @@ -39435,7 +39435,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spatial quality inhering in a bearer by virtue of the bearer's location within another entity. - PATOC:WD + PATOC:WD @@ -39670,7 +39670,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object. - PATOC:WD + PATOC:WD @@ -39691,7 +39691,7 @@ See https://github.com/pato-ontology/pato/issues/331. Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,. - url:http://www.oed.com/ + url:http://www.oed.com/ @@ -39712,7 +39712,7 @@ See https://github.com/pato-ontology/pato/issues/331. Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors. - url:http://www.oed.com/ + url:http://www.oed.com/ @@ -39733,7 +39733,7 @@ See https://github.com/pato-ontology/pato/issues/331. A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression. - PATOC:WD + PATOC:WD @@ -39754,7 +39754,7 @@ See https://github.com/pato-ontology/pato/issues/331. A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another. - PATOC:WD + PATOC:WD @@ -39795,7 +39795,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity. - PATOC:WD + PATOC:WD @@ -39816,7 +39816,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity. - PATOC:WD + PATOC:WD @@ -39837,7 +39837,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity. - PATOC:WD + PATOC:WD @@ -39881,7 +39881,7 @@ See https://github.com/pato-ontology/pato/issues/331. A mobility which is relative high. - PATO:GVG + PATO:GVG @@ -39948,7 +39948,7 @@ See https://github.com/pato-ontology/pato/issues/331. Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. - PATOC:CVS + PATOC:CVS @@ -39970,7 +39970,7 @@ See https://github.com/pato-ontology/pato/issues/331. Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. - PATOC:CVS + PATOC:CVS @@ -40071,7 +40071,7 @@ See https://github.com/pato-ontology/pato/issues/331. Absence of a tissue or organ due to failure to develop. - PATO:GVG + PATO:GVG @@ -40094,7 +40094,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change. - PATOC:WD + PATOC:WD @@ -40115,7 +40115,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time. - PATOC:WD + PATOC:WD @@ -40624,7 +40624,7 @@ See https://github.com/pato-ontology/pato/issues/331. Being separate or discrete from other skeletal elements. - PATOC:WD + PATOC:WD @@ -40773,7 +40773,7 @@ See https://github.com/pato-ontology/pato/issues/331. A temporal distribution pattern of process occurrences within a regulation/reference process. - PATOC:LC + PATOC:LC @@ -40796,19 +40796,19 @@ See https://github.com/pato-ontology/pato/issues/331. The temporal relation between the end of the process with respect to a reference process. - PATOC:LC + PATOC:LC completeness - GOC:CJM + GOC:CJM extent - GOC:CJM + GOC:CJM @@ -40830,7 +40830,7 @@ See https://github.com/pato-ontology/pato/issues/331. The temporal relation between the start of the process with respect to a reference process. - PATOC:LC + PATOC:LC @@ -40921,7 +40921,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts. - PATOC:DS + PATOC:DS @@ -40942,7 +40942,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk. - PATOC:PG + PATOC:PG @@ -41075,7 +41075,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base. - PATOC:DD + PATOC:DD @@ -41096,7 +41096,7 @@ See https://github.com/pato-ontology/pato/issues/331. A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form. - PATOC:DD + PATOC:DD @@ -41117,7 +41117,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end. - PATOC:DD + PATOC:DD @@ -41159,7 +41159,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality of being minutely hispid. - PATOC:DD + PATOC:DD @@ -41201,7 +41201,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality. - PATOC:DD + PATOC:DD @@ -41243,7 +41243,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb. - PATOC:DD + PATOC:DD @@ -41411,7 +41411,7 @@ See https://github.com/pato-ontology/pato/issues/331. A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. - PATOC:PG + PATOC:PG @@ -41868,7 +41868,7 @@ See https://github.com/pato-ontology/pato/issues/331. A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis. - PATOC:DS + PATOC:DS @@ -41889,7 +41889,7 @@ See https://github.com/pato-ontology/pato/issues/331. Recurrent and often more or less cyclic alteration. - PATOC:DS + PATOC:DS @@ -41910,7 +41910,7 @@ See https://github.com/pato-ontology/pato/issues/331. A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet. - PATOC:DS + PATOC:DS @@ -41933,7 +41933,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structure quality inhering in a bearer by virtue of the bearer's being filled with air. - PATOC:CVS + PATOC:CVS @@ -41955,7 +41955,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. - PATOC:CVS + PATOC:CVS @@ -42252,7 +42252,7 @@ See https://github.com/pato-ontology/pato/issues/331. A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -42298,7 +42298,7 @@ See https://github.com/pato-ontology/pato/issues/331. A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. - PATOC:LC + PATOC:LC @@ -42322,7 +42322,7 @@ See https://github.com/pato-ontology/pato/issues/331. A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. - PATOC:LC + PATOC:LC @@ -42996,7 +42996,7 @@ See https://github.com/pato-ontology/pato/issues/331. Open to view or not covered by another entity. - PATOC:WD + PATOC:WD @@ -43210,7 +43210,7 @@ See https://github.com/pato-ontology/pato/issues/331. A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -43254,7 +43254,7 @@ See https://github.com/pato-ontology/pato/issues/331. A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity. - merriam-webster:merriam-webster + merriam-webster:merriam-webster @@ -43492,7 +43492,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity. - PATOC:WD + PATOC:WD @@ -43782,7 +43782,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen. - PATOC:WD + PATOC:WD @@ -43803,7 +43803,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity. - PATOC:WD + PATOC:WD @@ -43824,7 +43824,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity. - PATOC:WD + PATOC:WD @@ -43861,7 +43861,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole. - PATOC:WD + PATOC:WD @@ -43882,7 +43882,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip. - PATOC:WD + PATOC:WD @@ -43903,7 +43903,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching. - PATOC:WD + PATOC:WD @@ -43925,7 +43925,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Structural quality inhering in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones. - PATOC:WD + PATOC:WD @@ -43947,7 +43947,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other. - PATOC:LC + PATOC:LC @@ -44036,7 +44036,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor. - PATOC:LC + PATOC:LC @@ -44058,7 +44058,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity. - PATOC:WD + PATOC:WD @@ -44080,7 +44080,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity. - PATOC:WD + PATOC:WD @@ -44124,7 +44124,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer. - PATOC:DS + PATOC:DS @@ -44147,7 +44147,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer. - PATOC:DS + PATOC:DS @@ -44210,7 +44210,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening. - PATOC:WD + PATOC:WD @@ -44232,7 +44232,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Positional quality in which an entity is located outside of another entity. - PATOC:WD + PATOC:WD @@ -44254,7 +44254,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V. - PATOC:WD + PATOC:WD @@ -44275,7 +44275,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other. - PATOC:WD + PATOC:WD @@ -44296,7 +44296,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A quality inhering in a process by virtue of that process having two or more organisms as participants. - PATOC:DS + PATOC:DS @@ -44318,7 +44318,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A quality inhering in a process by virtue of that process having exactly one organism as a participant. - PATOC:DS + PATOC:DS @@ -44340,7 +44340,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it. - PATOC:WD + PATOC:WD @@ -44362,7 +44362,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it. - PATOC:WD + PATOC:WD @@ -44384,7 +44384,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly. - PATOC:WD + PATOC:WD @@ -44407,7 +44407,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. - PATOC:WD + PATOC:WD @@ -44429,7 +44429,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally. - PATOC:WD + PATOC:WD @@ -44451,7 +44451,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally. - PATOC:WD + PATOC:WD @@ -44474,7 +44474,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. - PATOC:WD + PATOC:WD @@ -44497,7 +44497,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. - PATOC:WD + PATOC:WD @@ -44519,7 +44519,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally. - PATOC:WD + PATOC:WD @@ -44541,7 +44541,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally. - PATOC:WD + PATOC:WD @@ -44563,7 +44563,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially. - PATOC:WD + PATOC:WD @@ -44585,7 +44585,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly. - PATOC:WD + PATOC:WD @@ -44607,7 +44607,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally. - PATOC:WD + PATOC:WD @@ -44629,7 +44629,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally. - PATOC:WD + PATOC:WD @@ -44651,7 +44651,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely. - PATOC:WD + PATOC:WD @@ -44673,7 +44673,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally. - PATOC:WD + PATOC:WD @@ -44696,7 +44696,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. - PATOC:WD + PATOC:WD @@ -45276,7 +45276,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts. - PATOC:WD + PATOC:WD @@ -45299,7 +45299,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare. - PATOC:WD + PATOC:WD @@ -45320,7 +45320,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape. - PATOC:WD + PATOC:WD @@ -45341,7 +45341,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle. - PATOC:WD + PATOC:WD @@ -45407,7 +45407,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space). - PATOC:WD + PATOC:WD @@ -45428,7 +45428,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape. - PATOC:WD + PATOC:WD @@ -45568,7 +45568,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A 3-D shape that is half of a sphere. - PATOC:WD + PATOC:WD @@ -45596,7 +45596,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity. - PATOC:WD + PATOC:WD @@ -45617,7 +45617,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com - PATOC:WD + PATOC:WD @@ -45638,7 +45638,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle. - PATOC:WD + PATOC:WD @@ -45659,7 +45659,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A shape that is almost an ellipse. - PATOC:WD + PATOC:WD @@ -45680,7 +45680,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point. - PATOC:WD + PATOC:WD @@ -45703,7 +45703,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity. - PATOC:WD + PATOC:WD @@ -45770,7 +45770,7 @@ height'). A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth. - PATOC:WD + PATOC:WD @@ -45813,7 +45813,7 @@ height'). A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity. - PATOC:WD + PATOC:WD @@ -45835,7 +45835,7 @@ height'). A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. - PATOC:WD + PATOC:WD @@ -45857,7 +45857,7 @@ height'). A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. - PATOC:WD + PATOC:WD @@ -45878,7 +45878,7 @@ height'). A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical. - PATOC:WD + PATOC:WD @@ -45900,7 +45900,7 @@ height'). A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set. - PATOC:WD + PATOC:WD @@ -45923,7 +45923,7 @@ height'). A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity. - PATOC:WD + PATOC:WD @@ -45944,7 +45944,7 @@ height'). A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue. - PATOC:WD + PATOC:WD @@ -45965,7 +45965,7 @@ height'). A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline. - PATOC:WD + PATOC:WD @@ -45986,7 +45986,7 @@ height'). A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue. - PATOC:WD + PATOC:WD @@ -46007,7 +46007,7 @@ height'). A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles. - PATOC:WD + PATOC:WD @@ -46028,7 +46028,7 @@ height'). Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp. - PATOC:WD + PATOC:WD @@ -46049,7 +46049,7 @@ height'). A diameter that remains constant throughout the extent of an entity. - PATOC:WD + PATOC:WD @@ -46070,7 +46070,7 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane. - PATOC:WD + PATOC:WD @@ -46091,7 +46091,7 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis. - PATOC:WD + PATOC:WD @@ -46258,7 +46258,7 @@ height'). Absence due to a degenerative process. - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 @@ -46278,7 +46278,7 @@ height'). The ability of a process to produce its output. - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 @@ -46300,7 +46300,7 @@ height'). A decrease in the ability of a process to produce its output. - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 @@ -46322,7 +46322,7 @@ height'). A increase in the ability of a process to produce its output. - PATOC:PortlandMeetingFeb2015 + PATOC:PortlandMeetingFeb2015 @@ -46396,7 +46396,7 @@ height'). A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. - GOC:CJM + GOC:CJM @@ -46415,7 +46415,7 @@ height'). A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen. - GOC:CJM + GOC:CJM @@ -47407,7 +47407,7 @@ height'). A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. https://orcid.org/0000-0001-5208-3432 - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 @@ -48191,7 +48191,7 @@ height'). A structural quality inhering in a bearer by virtue of the bearer's components being torn, typically used for soft tissues or membranes. - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 @@ -48212,7 +48212,7 @@ height'). The rate or speed of the change in in number of a population. https://orcid.org/0000-0002-9900-7880 - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 @@ -48232,7 +48232,7 @@ height'). The rate or speed of the change in size of an individual entity. https://orcid.org/0000-0002-9900-7880 - https://orcid.org/0000-0003-4606-0597 + https://orcid.org/0000-0003-4606-0597 diff --git a/pato.json b/pato.json index 35cbc88..a499195 100644 --- a/pato.json +++ b/pato.json @@ -1896,19 +1896,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000670" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#is_inferred", - "val": "true" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/CL_0000048", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "meta": { "basicPropertyValues": [ @@ -14174,27 +14161,6 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/UBERON_0001171" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "MA" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "ZFA" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "cjm" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/UBERON_0002423", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002110" - }, { "meta": { "basicPropertyValues": [ @@ -14804,6 +14770,19 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002202", "sub": "http://purl.obolibrary.org/obo/UBERON_0005989" }, + { + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#source", + "val": "PMID:15890825" + } + ] + }, + "obj": "http://purl.obolibrary.org/obo/UBERON_0000062", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002328" + }, { "meta": { "basicPropertyValues": [ @@ -17658,19 +17637,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002170", "sub": "http://purl.obolibrary.org/obo/UBERON_0010064" }, - { - "meta": { - "basicPropertyValues": [ - { - "pred": "http://www.geneontology.org/formats/oboInOwl#source", - "val": "cjm" - } - ] - }, - "obj": "http://purl.obolibrary.org/obo/UBERON_0001173", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0006242" - }, { "meta": { "basicPropertyValues": [ @@ -19508,11 +19474,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0002294" }, - { - "obj": "http://purl.obolibrary.org/obo/BFO_0000040", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002328" - }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "is_a", @@ -24728,6 +24689,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000036194" }, + { + "obj": "http://purl.obolibrary.org/obo/CHEBI_36080", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000045358" + }, { "obj": "http://purl.obolibrary.org/obo/CHEBI_36235", "pred": "http://purl.obolibrary.org/obo/RO_0002233", @@ -28158,6 +28124,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_4023083" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000099", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_4023159" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000100", "pred": "http://purl.obolibrary.org/obo/BFO_0000051", @@ -28523,11 +28494,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002202", "sub": "http://purl.obolibrary.org/obo/CL_0000030" }, - { - "obj": "http://purl.obolibrary.org/obo/CL_0000133", - "pred": "http://purl.obolibrary.org/obo/RO_0002202", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/CL_0000133", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -30313,6 +30279,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_2000032" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_0000540", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_4023168" + }, { "obj": "http://purl.obolibrary.org/obo/CL_0000541", "pred": "http://purl.obolibrary.org/obo/RO_0002202", @@ -31798,11 +31769,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002473", "sub": "http://purl.obolibrary.org/obo/UBERON_0001016" }, - { - "obj": "http://purl.obolibrary.org/obo/CL_0002319", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/CL_0002319", "pred": "is_a", @@ -33518,6 +33484,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/CL_0000525" }, + { + "obj": "http://purl.obolibrary.org/obo/CL_2000073", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/CL_0000569" + }, { "obj": "http://purl.obolibrary.org/obo/CL_3000004", "pred": "is_a", @@ -33550,13 +33521,13 @@ }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003133" + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0000990" }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", "pred": "http://purl.obolibrary.org/obo/RO_0002216", - "sub": "http://purl.obolibrary.org/obo/UBERON_0000990" + "sub": "http://purl.obolibrary.org/obo/UBERON_0003133" }, { "obj": "http://purl.obolibrary.org/obo/GO_0000003", @@ -37733,6 +37704,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0003096" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0003014", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0097254" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0003015", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -39123,6 +39099,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0019899" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0005515", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0043559" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0005515", "pred": "is_a", @@ -43983,11 +43964,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002211", "sub": "http://purl.obolibrary.org/obo/GO_0044062" }, - { - "obj": "http://purl.obolibrary.org/obo/GO_0007588", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" - }, { "obj": "http://purl.obolibrary.org/obo/GO_0007588", "pred": "http://purl.obolibrary.org/obo/RO_0002353", @@ -43998,6 +43974,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0030421" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007588", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0097254" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007588", "pred": "is_a", @@ -44028,6 +44009,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0007606" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007600", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0019233" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007600", "pred": "is_a", @@ -44045,19 +44031,24 @@ }, { "obj": "http://purl.obolibrary.org/obo/GO_0007601", - "pred": "http://purl.obolibrary.org/obo/RO_0002215", - "sub": "http://purl.obolibrary.org/obo/UBERON_0002104" + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/CL_0008028" }, { "obj": "http://purl.obolibrary.org/obo/GO_0007601", "pred": "http://purl.obolibrary.org/obo/RO_0002216", - "sub": "http://purl.obolibrary.org/obo/CL_0008028" + "sub": "http://purl.obolibrary.org/obo/UBERON_0002104" }, { "obj": "http://purl.obolibrary.org/obo/GO_0007605", "pred": "http://purl.obolibrary.org/obo/RO_0002215", "sub": "http://purl.obolibrary.org/obo/UBERON_0016490" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0007605", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002105" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0007606", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -51148,6 +51139,31 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002213", "sub": "http://purl.obolibrary.org/obo/GO_1904457" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/GO_0062149" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002211", + "sub": "http://purl.obolibrary.org/obo/GO_0051930" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002212", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002213", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0019233", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0019318", "pred": "is_a", @@ -56378,6 +56394,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051970" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0031645", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0031646", "pred": "is_a", @@ -56388,6 +56409,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051971" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0031646", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0031965", "pred": "http://purl.obolibrary.org/obo/RO_0002234", @@ -65818,6 +65844,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002215", "sub": "http://purl.obolibrary.org/obo/UBERON_0002530" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0046903", + "pred": "http://purl.obolibrary.org/obo/RO_0002215", + "sub": "http://purl.obolibrary.org/obo/UBERON_8450002" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0046903", "pred": "is_a", @@ -70743,6 +70774,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050962" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050906", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0062149" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050907", "pred": "http://purl.obolibrary.org/obo/RO_0002215", @@ -70753,6 +70789,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050912" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050907", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050968" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050909", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -70923,6 +70964,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0007605" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050954", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050975" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050962", "pred": "http://purl.obolibrary.org/obo/RO_0002215", @@ -70933,6 +70979,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0050908" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0050975", + "pred": "http://purl.obolibrary.org/obo/RO_0002216", + "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0050994", "pred": "is_a", @@ -74018,6 +74069,21 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0051904" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051930", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904057" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051930", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_1904058" + }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0051931", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0051930" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0051937", "pred": "is_a", @@ -77488,6 +77554,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/GO_0061102" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0062149", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/GO_0050968" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0062237", "pred": "is_a", @@ -80088,6 +80159,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002213", "sub": "http://purl.obolibrary.org/obo/GO_1900143" }, + { + "obj": "http://purl.obolibrary.org/obo/GO_0097254", + "pred": "http://purl.obolibrary.org/obo/RO_0002215", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" + }, { "obj": "http://purl.obolibrary.org/obo/GO_0097272", "pred": "is_a", @@ -88818,6 +88894,16 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_88770" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131209", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_2684882" + }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131221", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_131209" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_131221", "pred": "is_a", @@ -88898,6 +88984,16 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3312" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_1437180", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3372" + }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_1445966", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3378" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_147537", "pred": "http://purl.obolibrary.org/obo/RO_0002233", @@ -88968,6 +89064,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_33682" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_2684882", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_3176" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_2698737", "pred": "is_a", @@ -89503,6 +89604,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/NCBITaxon_7711" }, + { + "obj": "http://purl.obolibrary.org/obo/NCBITaxon_3372", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/NCBITaxon_1445966" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_337687", "pred": "is_a", @@ -102038,6 +102144,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PATO_0015013" }, + { + "obj": "http://purl.obolibrary.org/obo/PATO_0070061", + "pred": "http://purl.obolibrary.org/obo/RO_0000053", + "sub": "http://purl.obolibrary.org/obo/CL_4023159" + }, { "obj": "http://purl.obolibrary.org/obo/PCO_0000000", "pred": "is_a", @@ -102398,6 +102509,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000036194" }, + { + "obj": "http://purl.obolibrary.org/obo/PR_000000001", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000045358" + }, { "obj": "http://purl.obolibrary.org/obo/PR_000001002", "pred": "http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part", @@ -104528,6 +104644,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PR_000001850" }, + { + "obj": "http://purl.obolibrary.org/obo/PR_000045358", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PR_000009054" + }, { "obj": "http://purl.obolibrary.org/obo/PR_000050216", "pred": "is_a", @@ -106118,16 +106239,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002433", "sub": "http://purl.obolibrary.org/obo/UBERON_0001808" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000012", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" - }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000012", - "pred": "http://purl.obolibrary.org/obo/RO_0002433", - "sub": "http://purl.obolibrary.org/obo/UBERON_0003942" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000013", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -107913,11 +108024,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002087", "sub": "http://purl.obolibrary.org/obo/UBERON_0000107" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000106", - "pred": "http://purl.obolibrary.org/obo/RO_0002224", - "sub": "http://purl.obolibrary.org/obo/UBERON_0000104" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000107", "pred": "http://purl.obolibrary.org/obo/BFO_0000062", @@ -109333,11 +109439,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0001007" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", "pred": "is_a", @@ -109416,7 +109517,7 @@ { "obj": "http://purl.obolibrary.org/obo/UBERON_0000467", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/UBERON_3011048" + "sub": "http://purl.obolibrary.org/obo/UBERON_8450002" }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0000468", @@ -112383,11 +112484,6 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002608", "sub": "http://purl.obolibrary.org/obo/GO_0007610" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0001017", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/CL_0000047" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001017", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -115103,6 +115199,11 @@ "pred": "http://purl.obolibrary.org/obo/uberon/core#channels_from", "sub": "http://purl.obolibrary.org/obo/UBERON_0001529" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0001508", + "pred": "http://purl.obolibrary.org/obo/uberon/core#channels_from", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001584" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0001514", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -120568,6 +120669,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/UBERON_0001173" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0002294", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002110" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0002294", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -124888,6 +124994,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0005398" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0003942", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/CL_4023168" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0003942", "pred": "http://purl.obolibrary.org/obo/RO_0002385", @@ -125543,11 +125654,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0010371" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_0004122", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_3011048" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0004122", "pred": "http://purl.obolibrary.org/obo/RO_0002296", @@ -134098,6 +134204,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0010743" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_0034932", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0002029" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_0034932", "pred": "is_a", @@ -134508,11 +134619,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_3000977" }, - { - "obj": "http://purl.obolibrary.org/obo/UBERON_3011048", - "pred": "http://purl.obolibrary.org/obo/BFO_0000050", - "sub": "http://purl.obolibrary.org/obo/UBERON_0004176" - }, { "obj": "http://purl.obolibrary.org/obo/UBERON_4000013", "pred": "is_a", @@ -134638,6 +134744,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/UBERON_0002148" }, + { + "obj": "http://purl.obolibrary.org/obo/UBERON_8450002", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/UBERON_0001008" + }, { "obj": "http://purl.obolibrary.org/obo/UBERON_8480007", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -134963,18 +135074,6 @@ } ] }, - { - "definedClassId": "http://purl.obolibrary.org/obo/CL_0000047", - "genusIds": [ - "http://purl.obolibrary.org/obo/CL_0000048" - ], - "restrictions": [ - { - "fillerId": "http://purl.obolibrary.org/obo/UBERON_0001017", - "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" - } - ] - }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_0000048", "genusIds": [ @@ -141583,6 +141682,30 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_4023159", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000099" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/PATO_0070061", + "propertyId": "http://purl.obolibrary.org/obo/RO_0000053" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/CL_4023168", + "genusIds": [ + "http://purl.obolibrary.org/obo/CL_0000540" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/UBERON_0003942", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/CL_4028001", "genusIds": [ @@ -166687,6 +166810,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0050968", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0009593" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0050994", "genusIds": [ @@ -168079,6 +168214,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0051930", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002211" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0051931", "genusIds": [ @@ -172731,6 +172878,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_0062149", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0051606" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_0062237", "genusIds": [ @@ -184051,6 +184210,30 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_1904057", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002212" + } + ] + }, + { + "definedClassId": "http://purl.obolibrary.org/obo/GO_1904058", + "genusIds": [ + "http://purl.obolibrary.org/obo/GO_0065007" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0019233", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002213" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/GO_1904062", "genusIds": [ @@ -195142,11 +195325,11 @@ { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0001008", "genusIds": [ - "http://purl.obolibrary.org/obo/UBERON_0000467" + "http://purl.obolibrary.org/obo/UBERON_8450002" ], "restrictions": [ { - "fillerId": "http://purl.obolibrary.org/obo/GO_0007588", + "fillerId": "http://purl.obolibrary.org/obo/GO_0097254", "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" } ] @@ -198267,7 +198450,7 @@ "restrictions": [ { "fillerId": "http://purl.obolibrary.org/obo/GO_0000003", - "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" + "propertyId": "http://purl.obolibrary.org/obo/RO_0002216" } ] }, @@ -200731,18 +200914,6 @@ } ] }, - { - "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0003942", - "genusIds": [ - "http://purl.obolibrary.org/obo/UBERON_0001032" - ], - "restrictions": [ - { - "fillerId": "http://purl.obolibrary.org/obo/UBERON_0000012", - "propertyId": "http://purl.obolibrary.org/obo/BFO_0000050" - } - ] - }, { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_0003952", "genusIds": [ @@ -212415,6 +212586,18 @@ } ] }, + { + "definedClassId": "http://purl.obolibrary.org/obo/UBERON_8450002", + "genusIds": [ + "http://purl.obolibrary.org/obo/UBERON_0000467" + ], + "restrictions": [ + { + "fillerId": "http://purl.obolibrary.org/obo/GO_0046903", + "propertyId": "http://purl.obolibrary.org/obo/RO_0002215" + } + ] + }, { "definedClassId": "http://purl.obolibrary.org/obo/UBERON_8470000", "genusIds": [ @@ -212516,10 +212699,10 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2022-08-10" + "val": "2022-08-31" } ], - "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-10/pato.json" + "version": "http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato.json" }, "nodes": [ { @@ -239562,6 +239745,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000037", "lbl": "hematopoietic stem cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative." ], @@ -239575,6 +239764,9 @@ "http://en.wikipedia.org/wiki/Hematopoietic_stem_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239751,43 +239943,6 @@ }, "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000047", - "lbl": "neuronal stem cell", - "meta": { - "definition": { - "val": "Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors.", - "xrefs": [ - "GOC:tfm", - "MESH:D058953", - "PMID:15247488", - "http://en.wikipedia.org/wiki/Neural_stem_cell" - ] - }, - "synonyms": [ - { - "pred": "hasExactSynonym", - "val": "NSC" - }, - { - "pred": "hasExactSynonym", - "val": "neural stem cell" - } - ], - "xrefs": [ - { - "val": "BTO:0002881" - }, - { - "val": "CALOHA:TS-2360" - }, - { - "val": "FMA:86684" - } - ] - }, - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000048", "lbl": "multi fate stem cell", @@ -239828,6 +239983,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000049", "lbl": "common myeloid progenitor", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059)." ], @@ -239839,6 +240000,9 @@ "MESH:D023461" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239906,6 +240070,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000050", "lbl": "megakaryocyte-erythroid progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2." ], @@ -239920,6 +240090,9 @@ "http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -239958,6 +240131,10 @@ "lbl": "common lymphoid progenitor", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000044" @@ -239976,6 +240153,9 @@ "PMID:16551251" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240111,6 +240291,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000057", "lbl": "fibroblast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative." ], @@ -240122,6 +240308,9 @@ "http://en.wikipedia.org/wiki/Fibroblast" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000452" @@ -240193,6 +240382,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000066", "lbl": "epithelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.", "xrefs": [ @@ -240201,6 +240396,9 @@ "MESH:D004847" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240265,12 +240463,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000071", "lbl": "blood vessel endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that lines the vasculature.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240284,13 +240491,22 @@ "id": "http://purl.obolibrary.org/obo/CL_0000075", "lbl": "columnar/cuboidal epithelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.", "xrefs": [ "GO:0002065", "https://orcid.org/0000-0001-5208-3432" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -240310,6 +240526,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000077", "lbl": "mesothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A flattened epithelial cell of mesenchymal origin that lines the serous cavity.", "xrefs": [ @@ -240317,6 +240539,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240423,6 +240648,10 @@ "lbl": "T cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000804" @@ -240440,6 +240669,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240486,6 +240718,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000092", "lbl": "osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid." ], @@ -240501,6 +240739,9 @@ "PMID:17380158" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -240528,6 +240769,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000094", "lbl": "granulocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A leukocyte with abundant granules in the cytoplasm.", "xrefs": [ @@ -240537,6 +240784,9 @@ "http://en.wikipedia.org/wiki/Granulocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -240601,6 +240851,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000099", "lbl": "interneuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.", "xrefs": [ @@ -240608,6 +240864,9 @@ "MESH:D007395" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003811" @@ -240804,6 +241063,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000115", "lbl": "endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]." ], @@ -240817,6 +241082,9 @@ "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241105,6 +241373,10 @@ "lbl": "fat cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000450" @@ -241116,6 +241388,9 @@ "MESH:D017667" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241227,6 +241502,10 @@ "lbl": "melanocyte", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000572" @@ -241238,6 +241517,9 @@ "SANBI:mhl" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasNarrowSynonym", @@ -241302,6 +241584,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000151", "lbl": "secretory cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell that specializes in controlled release of one or more substances.", "xrefs": [ @@ -241309,6 +241597,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003659" @@ -241379,6 +241670,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000158", "lbl": "club cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium.", "xrefs": [ @@ -241389,6 +241686,9 @@ "PMID:7905712" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241467,12 +241767,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000165", "lbl": "neuroendocrine cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals.", "xrefs": [ "MESH:D055099" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241506,6 +241815,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000169", "lbl": "type B pancreatic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression." ], @@ -241517,6 +241832,9 @@ "http://en.wikipedia.org/wiki/Pancreatic_b_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241634,6 +241952,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000171", "lbl": "pancreatic A cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.", "xrefs": [ @@ -241641,6 +241965,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241669,6 +241996,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000173", "lbl": "pancreatic D cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.", "xrefs": [ @@ -241676,6 +242009,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241717,6 +242053,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000182", "lbl": "hepatocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive." ], @@ -241730,6 +242072,9 @@ "http://en.wikipedia.org/wiki/Hepatocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000575" @@ -241804,12 +242149,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000188", "lbl": "cell of skeletal muscle", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A somatic cell located in skeletal muscle.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -241835,6 +242189,10 @@ "lbl": "smooth muscle cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0000191" @@ -241848,6 +242206,9 @@ "http://en.wikipedia.org/wiki/Smooth_muscle_cell" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -242238,6 +242599,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000232", "lbl": "erythrocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.", "xrefs": [ @@ -242245,6 +242612,9 @@ "MESH:D004912" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242298,6 +242668,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000235", "lbl": "macrophage", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid." ], @@ -242311,6 +242687,9 @@ "PMID:1919437" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242337,16 +242716,41 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0000240", + "lbl": "stratified squamous epithelial cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0000242", "lbl": "Merkel cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber.", "xrefs": [ "MESH:D018862" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242373,6 +242777,22 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0000287", + "lbl": "eye photoreceptor cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0000293", "lbl": "structural cell", @@ -242475,6 +242895,10 @@ "lbl": "keratinocyte", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002185" @@ -242494,6 +242918,9 @@ "http://en.wikipedia.org/wiki/Keratinocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242522,6 +242949,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000313", "lbl": "serous secreting cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.", "xrefs": [ @@ -242530,6 +242963,9 @@ "ISBN:0721662544" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242768,6 +243204,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000359", "lbl": "vascular associated smooth muscle cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A smooth muscle cell associated with the vasculature.", "xrefs": [ @@ -242775,6 +243217,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -242954,6 +243399,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000451", "lbl": "dendritic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative).", "xrefs": [ @@ -242961,6 +243412,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -243171,12 +243625,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000509", "lbl": "gastrin secreting cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A peptide hormone secreting cell that secretes gastrin.", "xrefs": [ "GO:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -243275,6 +243738,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000525", "lbl": "syncytiotrophoblast cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy.", "xrefs": [ @@ -243282,6 +243751,9 @@ "ISBN:0323052908" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243308,6 +243780,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000526", "lbl": "afferent neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A neuron which conveys sensory information centrally from the periphery.", "xrefs": [ @@ -243315,6 +243793,9 @@ "MESH:D009475" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243352,6 +243833,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000540", "lbl": "neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma." ], @@ -243362,6 +243849,9 @@ "http://en.wikipedia.org/wiki/Neuron" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243420,6 +243910,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000542", "lbl": "lymphocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)" ], @@ -243431,6 +243927,9 @@ "ISBN:0781735149" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000775" @@ -243661,6 +244160,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000553", "lbl": "megakaryocyte progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative." ], @@ -243672,6 +244177,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243748,6 +244256,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000556", "lbl": "megakaryocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Megakaryocytes are reportedly CD181-positive and CD182-positive." ], @@ -243759,6 +244273,9 @@ "http://en.wikipedia.org/wiki/Megakaryocyte" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -243898,6 +244415,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000559", "lbl": "promonocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid." ], @@ -243908,6 +244431,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004657" @@ -244024,12 +244550,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000573", "lbl": "retinal cone cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.", "xrefs": [ "MESH:D017949" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001036" @@ -244049,6 +244584,10 @@ "lbl": "corneal epithelial cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:1000431" @@ -244060,6 +244599,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244087,6 +244629,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000576", "lbl": "monocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid." ], @@ -244097,6 +244645,9 @@ "MESH:D009000" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000876" @@ -244221,12 +244772,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000604", "lbl": "retinal rod cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.", "xrefs": [ "MESH:D017948" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001024" @@ -244302,6 +244862,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000646", "lbl": "basal cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament.", "xrefs": [ @@ -244309,6 +244875,9 @@ "ISBN:0517223651" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0000939" @@ -244602,12 +245171,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000740", "lbl": "retinal ganglion cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.", "xrefs": [ "GOC:dph" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244641,6 +245219,10 @@ "lbl": "cardiac muscle cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "FMA:83808" @@ -244659,6 +245241,9 @@ "PMID:4711263" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -244705,12 +245290,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000748", "lbl": "retinal bipolar neuron", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.", "xrefs": [ "PMID:14689473" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -244718,12 +245312,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0000763", "lbl": "myeloid cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.", "xrefs": [ "GOC:add" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001441" @@ -244743,6 +245346,10 @@ "lbl": "erythroid lineage cell", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002156" @@ -244758,6 +245365,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -244830,6 +245440,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000775", "lbl": "neutrophil", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.", "xrefs": [ @@ -244839,6 +245455,9 @@ "ISBN:0721601464" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -244946,6 +245565,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000778", "lbl": "mononuclear osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: mononuclear, highly vesicular." ], @@ -244959,7 +245584,10 @@ "PMID:17380158", "PMID:9415452" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -244967,6 +245595,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000779", "lbl": "multinuclear osteoclast", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Morphology: multinucleated, highly vesicular." ], @@ -244978,6 +245612,9 @@ "PMID:9415452" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -245114,6 +245751,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000836", "lbl": "promyelocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative.", "xrefs": [ @@ -245124,6 +245767,9 @@ "http://www.cap.org" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "CALOHA:TS-0825" @@ -245139,6 +245785,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000837", "lbl": "hematopoietic multipotent progenitor cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Markers differ between mouse and human." ], @@ -245150,6 +245802,9 @@ "PMID:19022770" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -245394,6 +246049,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0000990", "lbl": "conventional dendritic cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive." ], @@ -245405,6 +246066,9 @@ "PMID:17850486" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasBroadSynonym", @@ -245724,8 +246388,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "adiehl" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -245746,6 +246410,12 @@ "id": "http://purl.obolibrary.org/obo/CL_0001054", "lbl": "CD14-positive monocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "comments": [ "This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes." ], @@ -245756,6 +246426,9 @@ "PMID:22343568" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasNarrowSynonym", @@ -245852,8 +246525,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -245876,11 +246549,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T18:53:32Z" } ], @@ -245909,11 +246582,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T19:16:26Z" } ], @@ -245952,11 +246625,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-9990-8331" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9990-8331" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2017-01-30T19:39:12Z" } ], @@ -246036,8 +246709,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246071,8 +246744,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246099,8 +246772,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246127,8 +246800,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246156,8 +246829,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246186,8 +246859,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246214,8 +246887,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246242,8 +246915,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246273,8 +246946,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246301,8 +246974,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246329,8 +247002,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246357,8 +247030,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246381,8 +247054,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246409,8 +247082,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246447,8 +247120,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246485,8 +247158,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246512,8 +247185,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246545,8 +247218,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246573,8 +247246,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246590,6 +247267,9 @@ "http://www.copewithcytokines.de/cope.cgi?key=pancreatic%20acinar%20cells" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -246616,8 +247296,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246645,8 +247325,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246692,8 +247372,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246745,8 +247425,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246774,8 +247454,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246803,8 +247483,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246832,8 +247512,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246861,8 +247541,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246896,8 +247576,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246912,6 +247596,9 @@ "PMID:14740223" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:63099" @@ -246926,8 +247613,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246943,6 +247634,9 @@ "PMID:8185160" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -246967,8 +247661,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -246996,8 +247690,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247030,8 +247724,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247079,8 +247773,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247117,8 +247811,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247132,6 +247830,9 @@ "ISBN:068340007X" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -247152,8 +247853,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247189,8 +247890,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247238,8 +247939,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247252,6 +247957,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004956" @@ -247272,8 +247980,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247287,6 +247999,9 @@ "ISBN:0517223651" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:70542" @@ -247301,8 +248016,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247333,8 +248048,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247361,8 +248076,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247385,8 +248100,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247417,8 +248132,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247449,8 +248164,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247482,8 +248197,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247515,8 +248230,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247543,8 +248258,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247571,8 +248286,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247614,8 +248329,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247646,8 +248361,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247681,8 +248396,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247710,8 +248425,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247726,6 +248445,9 @@ "http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67559" @@ -247740,8 +248462,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247768,8 +248490,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247796,8 +248518,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247836,8 +248558,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247876,8 +248598,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247900,8 +248622,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247932,8 +248654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -247973,8 +248695,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248005,8 +248727,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248021,6 +248747,9 @@ "Wiki:Decidualization&oldid=908981933#Endometrial_stromal_cells_(ESCs)" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248044,8 +248773,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248077,8 +248806,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248096,6 +248829,9 @@ "ISBN:0618947256" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:63134" @@ -248110,8 +248846,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248138,8 +248874,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248180,8 +248916,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248222,8 +248958,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248264,8 +249000,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248281,6 +249021,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248315,8 +249058,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248349,8 +249092,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248381,8 +249124,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248420,8 +249163,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248457,8 +249200,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248485,8 +249228,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248499,7 +249246,10 @@ "GOC:tfm", "PMID:18757316" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -248509,8 +249259,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248533,8 +249283,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248557,8 +249307,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248603,8 +249353,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248639,8 +249389,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248663,8 +249413,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248687,8 +249437,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248702,6 +249456,9 @@ "ISBN:978-0-7020-2958-5" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -248721,8 +249478,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248755,8 +249512,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248793,8 +249550,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248838,8 +249595,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248867,8 +249624,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248903,8 +249660,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248929,8 +249686,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -248963,11 +249720,11 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-1773-2692" + "val": "https://orcid.org/0000-0002-1773-2692" }, { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249033,8 +249790,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249067,8 +249824,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249091,8 +249848,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249116,8 +249873,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249143,8 +249900,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249167,8 +249924,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249213,8 +249970,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249244,8 +250001,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249273,8 +250030,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249287,6 +250048,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -249302,8 +250066,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249335,8 +250099,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249363,8 +250127,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249386,8 +250150,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249409,8 +250173,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249427,6 +250195,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -249454,8 +250225,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249480,8 +250251,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249503,8 +250274,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249532,8 +250303,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249549,8 +250320,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249580,8 +250351,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249603,8 +250374,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249626,8 +250397,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249655,8 +250426,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249678,8 +250449,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249692,6 +250467,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001220" @@ -249712,8 +250490,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249725,7 +250507,10 @@ "xrefs": [ "GOC:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -249735,8 +250520,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249758,8 +250543,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249771,7 +250560,10 @@ "xrefs": [ "GOC:tfm" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -249781,8 +250573,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249804,8 +250596,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249827,8 +250619,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249841,6 +250637,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0003336" @@ -249855,8 +250654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249878,8 +250677,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249901,14 +250700,21 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2011-03-06T05:46:39Z" } ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0004402" @@ -249923,8 +250729,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249946,8 +250752,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249969,8 +250775,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -249992,8 +250798,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250015,8 +250821,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250038,8 +250844,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250052,6 +250862,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "BTO:0001255" @@ -250069,8 +250882,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250086,8 +250899,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250109,8 +250922,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250132,8 +250945,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250160,8 +250973,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250188,8 +251001,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250216,8 +251029,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250247,8 +251060,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250275,8 +251088,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250319,8 +251132,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250344,8 +251157,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250368,8 +251181,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250392,8 +251205,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250487,8 +251300,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250522,8 +251335,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250545,8 +251358,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "haendel" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-9114-8737" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250709,12 +251522,21 @@ "id": "http://purl.obolibrary.org/obo/CL_0008024", "lbl": "pancreatic endocrine cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endocrine cell that is part of the pancreas.", "xrefs": [ "GOC:dos" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -250724,8 +251546,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250757,8 +251579,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250772,7 +251598,8 @@ ] }, "subsets": [ - "http://purl.obolibrary.org/obo/cl#added_for_HCA" + "http://purl.obolibrary.org/obo/cl#added_for_HCA", + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ] }, "type": "CLASS" @@ -250783,8 +251610,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "dos" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-7073-9172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -250856,8 +251683,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "definition": { @@ -250884,8 +251711,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" } ], "comments": [ @@ -250898,7 +251729,8 @@ ] }, "subsets": [ - 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"pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2022-02-21T15:39:10Z" } ], "definition": { @@ -251530,12 +252362,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2022-03-17T12:00:44Z" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-2825-0621" }, { - "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-2825-0621" + "pred": "http://purl.org/dc/terms/date", + "val": "2022-03-17T12:00:44Z" } ], "definition": { @@ -251561,8 +252393,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "GOC:cjm" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-6601-2165" } ], "definition": { @@ -251583,8 +252415,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "GOC:cjm" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-6601-2165" } ], "definition": { @@ -251599,6 +252431,22 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_0010008", + "lbl": "cardiac endothelial cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_0010009", "lbl": "camera-type eye photoreceptor cell", @@ -251618,8 +252466,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", @@ -251774,8 +252622,8 @@ "meta": { "basicPropertyValues": [ { - 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"pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251868,8 +252716,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0001-5208-3432" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-5208-3432" } ], "definition": { @@ -251946,8 +252794,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tberardini" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-3837-8864" } ], "definition": { @@ -251968,8 +252816,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -251991,8 +252839,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252020,8 +252868,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252043,8 +252891,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252066,8 +252914,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252089,8 +252937,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "tmeehan" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-1980-3228" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -252112,11 +252960,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-05-07T16:03:27Z" } ], @@ -252141,11 +252989,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-05-07T17:29:51Z" } ], @@ -252153,7 +253005,8 @@ "val": "Any chondrocyte that is part of the tracheobronchial tree." }, "subsets": [ - "http://purl.obolibrary.org/obo/cl#added_for_HCA" + "http://purl.obolibrary.org/obo/cl#added_for_HCA", + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms": [ { @@ -252170,11 +253023,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-07-21T12:42:48Z" } ], @@ -252184,6 +253041,9 @@ "PMID:9108778" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252199,11 +253059,15 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" + }, + { + "pred": "http://purl.org/dc/terms/date", "val": "2020-07-21T12:50:22Z" } ], @@ -252213,6 +253077,9 @@ "PMID:10853867" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252228,11 +253095,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-03T12:24:24Z" } ], @@ -252260,11 +253127,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-09T13:56:47Z" } ], @@ -252304,11 +253171,11 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0003-2034-601X" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0003-2034-601X" }, { - "pred": "http://purl.org/dc/elements/1.1/date", + "pred": "http://purl.org/dc/terms/date", "val": "2020-09-10T12:38:29Z" } ], @@ -252342,6 +253209,38 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_1000223", + "lbl": "lung neuroendocrine cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_1000271", + "lbl": "lung ciliated cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_1000274", "lbl": "trophectodermal cell", @@ -252413,12 +253312,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000279", "lbl": "smooth muscle cell of large intestine", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A smooth muscle cell that is part of the large intestine.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252606,12 +253514,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000309", "lbl": "epicardial adipocyte", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A fat cell that is part of the epicardial fat.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252834,6 +253751,12 @@ "id": "http://purl.obolibrary.org/obo/CL_1000398", "lbl": "endothelial cell of hepatic sinusoid", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates.", "xrefs": [ @@ -252841,6 +253764,9 @@ "PMID:3926620" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -252995,12 +253921,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000412", "lbl": "endothelial cell of arteriole", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the arteriole.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67760" @@ -253017,6 +253952,10 @@ "lbl": "endothelial cell of artery", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "CL:0002542" @@ -253028,6 +253967,9 @@ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253052,12 +253994,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000414", "lbl": "endothelial cell of venule", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An endothelial cell that is part of the venule.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:67762" @@ -253068,7 +254019,7 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_1000415", - "lbl": "epithelial cell of gall bladder", + "lbl": "epithelial cell of gallbladder", "meta": { "definition": { "val": "An epithelial cell that is part of the gallbladder.", @@ -253205,12 +254156,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000457", "lbl": "mesothelial cell of visceral peritoneum", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A mesothelial cell that is part of the visceral peritoneum.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:72143" @@ -253223,12 +254183,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000458", "lbl": "melanocyte of skin", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A melanocyte that is part of the skin of body.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253411,12 +254380,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1000493", "lbl": "mesothelial cell of visceral pleura", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "A mesothelial cell that is part of the visceral pleura.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "xrefs": [ { "val": "FMA:86739" @@ -253429,12 +254407,21 @@ "id": "http://purl.obolibrary.org/obo/CL_1001433", "lbl": "epithelial cell of exocrine pancreas", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "An epithelial cell of the exocrine pancreas.", "xrefs": [ "GOC:tfm" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasExactSynonym", @@ -253483,6 +254470,15 @@ "id": "http://purl.obolibrary.org/obo/CL_1001568", "lbl": "pulmonary artery endothelial cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -253723,25 +254719,25 @@ }, { "id": "http://purl.obolibrary.org/obo/CL_1001592", - "lbl": "gall bladder glandular cell", + "lbl": "gallbladder glandular cell", "meta": { "definition": { - "val": "Glandular cell of gall bladder epithelium.", + "val": "Glandular cell of gallbladder epithelium.", "xrefs": [ "NPX:PDR" ] }, "synonyms": [ { - "pred": "hasRelatedSynonym", - "val": "gall bladder glandular cells", + "pred": "hasExactSynonym", + "val": "gall bladder glandular cell", "xrefs": [ - "CALOHA:TS-1278" + "FMA:7202" ] }, { "pred": "hasRelatedSynonym", - "val": "gallbladder glandular cell", + "val": "gall bladder glandular cells", "xrefs": [ "CALOHA:TS-1278" ] @@ -253845,6 +254841,12 @@ "id": "http://purl.obolibrary.org/obo/CL_1001599", "lbl": "pancreas exocrine glandular cell", "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + } + ], "definition": { "val": "Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.", "xrefs": [ @@ -253852,6 +254854,9 @@ "NPX:PDR" ] }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ], "synonyms": [ { "pred": "hasRelatedSynonym", @@ -253999,8 +255004,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254025,8 +255030,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254048,8 +255053,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254071,8 +255076,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254084,7 +255093,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254094,8 +255106,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254117,8 +255129,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254140,8 +255152,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254163,8 +255175,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254191,8 +255203,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254214,8 +255226,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254237,8 +255249,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254260,8 +255272,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254283,8 +255295,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254326,8 +255338,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254349,8 +255361,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254372,8 +255384,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254395,8 +255407,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254418,8 +255430,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254441,8 +255453,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254457,7 +255473,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254467,8 +255486,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254499,8 +255518,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254550,8 +255569,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254576,8 +255595,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254592,7 +255615,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254602,8 +255628,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254628,8 +255654,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254654,8 +255680,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254670,7 +255700,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254680,8 +255713,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254696,7 +255733,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254706,8 +255746,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254732,8 +255772,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254758,8 +255798,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254784,8 +255824,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254810,8 +255850,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254823,7 +255863,16 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "cardiac neural crest cell", + "xrefs": [ + "PMID:33060096" + ] + } + ] }, "type": "CLASS" }, @@ -254833,8 +255882,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254859,8 +255908,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254888,8 +255937,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254911,8 +255960,12 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.obolibrary.org/obo/RO_0002175", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254924,7 +255977,10 @@ "xrefs": [ "GOC:TermGenie" ] - } + }, + "subsets": [ + "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" + ] }, "type": "CLASS" }, @@ -254934,8 +255990,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "TermGenie" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q35563349" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254957,8 +256013,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "CellBLAST" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q97529981" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -254981,8 +256037,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "CellBLAST" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://www.wikidata.org/entity/Q97529981" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -255005,8 +256061,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255038,8 +256094,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255071,8 +256127,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255104,8 +256160,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255132,8 +256188,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255154,8 +256210,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255181,8 +256237,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255218,8 +256274,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255240,8 +256296,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255262,8 +256318,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255284,8 +256340,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255306,8 +256362,8 @@ "meta": { "basicPropertyValues": [ { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0001-7258-9596" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0001-7258-9596" } ], "definition": { @@ -255326,7 +256382,7 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0001-7258-9596" + "val": "https://orcid.org/0000-0001-7258-9596" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", @@ -255342,14 +256398,52 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/CL_4023159", + "lbl": "double bouquet cell", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "http://orcid.org/0000-0001-7258-9596" + } + ], + "definition": { + "val": "An interneuron that has double bouquet morphology.", + "xrefs": [ + "PMID:15378039" + ] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/CL_4023168", + "lbl": "somatosensory neuron", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "http://orcid.org/0000-0001-7258-9596" + } + ], + "definition": { + "val": "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.", + "xrefs": [ + "PMID:22865660" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/CL_4028001", "lbl": "pulmonary capillary endothelial cell", "meta": { "basicPropertyValues": [ { - "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", - "val": "http://orcid.org/0000-0002-3293-5463" + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-3293-5463" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -255375,7 +256469,7 @@ "basicPropertyValues": [ { "pred": "http://purl.org/dc/terms/contributor", - "val": "http://orcid.org/0000-0002-1773-2692" + "val": "https://orcid.org/0000-0002-1773-2692" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", @@ -293058,6 +294152,40 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0019233", + "lbl": "sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.", + "xrefs": [ + "GOC:curators" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "nociception" + }, + { + "pred": "hasNarrowSynonym", + "val": "perception of physiological pain" + } + ], + "xrefs": [ + { + "val": "Wikipedia:Nociception" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0019318", "lbl": "hexose metabolic process", @@ -338952,6 +340080,96 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0050968", + "lbl": "detection of chemical stimulus involved in sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal.", + "xrefs": [ + "GOC:ai" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "perception of pain, detection of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "perception of pain, sensory detection of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "perception of pain, sensory transduction of chemical stimulus" + }, + { + "pred": "hasExactSynonym", + "val": "sensory detection of chemical stimulus during perception of pain" + }, + { + "pred": "hasExactSynonym", + "val": "sensory transduction of chemical stimulus during perception of pain" + }, + { + "pred": "hasRelatedSynonym", + "val": "chemical nociception", + "xrefs": [ + "GOC:pr" + ] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/GO_0050975", + "lbl": "sensory perception of touch", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).", + "xrefs": [ + "GOC:ai" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "perception of touch" + }, + { + "pred": "hasExactSynonym", + "val": "tactile sense" + }, + { + "pred": "hasExactSynonym", + "val": "taction" + }, + { + "pred": "hasExactSynonym", + "val": "tactition" + } + ], + "xrefs": [ + { + "val": "Wikipedia:Touch" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0050994", "lbl": "regulation of lipid catabolic process", @@ -343797,6 +345015,25 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0051930", + "lbl": "regulation of sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal.", + "xrefs": [ + "GOC:ai" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0051931", "lbl": "regulation of sensory perception", @@ -355891,6 +357128,33 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0062149", + "lbl": "detection of stimulus involved in sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "dph" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2019-09-13T13:48:47Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal.", + "xrefs": [ + "PMID:19837031" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0062237", "lbl": "protein localization to postsynapse", @@ -365051,6 +366315,39 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_0097254", + "lbl": "renal tubular secretion", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000233", + "val": "https://github.com/geneontology/go-ontology/issues/22368" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "pr" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2012-03-05T02:03:58Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs.", + "xrefs": [ + "GOC:rph", + "PMID:25287933", + "Wikipedia:Renal_secretion#Secretion" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_0097272", "lbl": "ammonium homeostasis", @@ -404565,6 +405862,264 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/GO_1904057", + "lbl": "negative regulation of sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "sl" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2015-03-18T20:33:57Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain.", + "xrefs": [ + "GOC:TermGenie", + "GO_REF:0000058", + "PMID:17167094" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "down regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down-regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "down-regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "downregulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "downregulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "negative regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "down regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "down-regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "downregulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "inhibition of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "negative regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/GO_1904058", + "lbl": "positive regulation of sensory perception of pain", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "sl" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2015-03-18T20:34:03Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "biological_process" + } + ], + "definition": { + "val": "Any process that activates or increases the frequency, rate or extent of sensory perception of pain.", + "xrefs": [ + "GOC:TermGenie", + "GO_REF:0000058", + "PMID:17167094" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "positive regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "up regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "up regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "up-regulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "up-regulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "upregulation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasExactSynonym", + "val": "upregulation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "activation of nociception", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "activation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "activation of sensory perception of pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "positive regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "up regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "up-regulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + }, + { + "pred": "hasNarrowSynonym", + "val": "upregulation of perception of physiological pain", + "xrefs": [ + "GOC:TermGenie" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/GO_1904062", "lbl": "regulation of cation transmembrane transport", @@ -437562,6 +439117,55 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_131209", + "lbl": "Zygnemophyceae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_class" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#common_name", + "val": "gamophytes" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Conjugatophyceae" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gamophyceae" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gamophyta" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Zygnematophyceae" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_131221", "lbl": "Streptophytina", @@ -437785,6 +439389,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_1445966", + "lbl": "Gnetidae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_subclass" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_147537", "lbl": "Saccharomycotina", @@ -438388,6 +440014,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_2684882", + "lbl": "Zygnematophycidae", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_subclass" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_2698737", "lbl": "Sar", @@ -438554,6 +440202,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3176", + "lbl": "Zygnematales", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_order" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_3193", "lbl": "Embryophyta", @@ -439104,6 +440774,40 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3372", + "lbl": "Gnetopsida", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_class" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "synonyms": [ + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Chlamydospermopsida" + }, + { + "pred": "hasRelatedSynonym", + "synonymType": "http://purl.obolibrary.org/obo/ncbitaxon#synonym", + "val": "Gneticae" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_337687", "lbl": "Muroidea", @@ -439132,6 +440836,28 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/NCBITaxon_3378", + "lbl": "Gnetales", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/ncbitaxon#has_rank", + "val": "http://purl.obolibrary.org/obo/NCBITaxon_order" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "ncbi_taxonomy" + } + ], + "xrefs": [ + { + "val": "GC_ID:1" + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/NCBITaxon_3398", "lbl": "Magnoliopsida", @@ -512362,6 +514088,45 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/PR_000009054", + "lbl": "insulin gene translation product", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "protein" + } + ], + "comments": [ + "Category=gene." + ], + "definition": { + "val": "An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof.", + "xrefs": [ + "PRO:DNx" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/pr#PRO-short-label", + "val": "INS", + "xrefs": [ + "PRO:DNx" + ] + }, + { + "pred": "hasBroadSynonym", + "val": "insulin", + "xrefs": [ + "PRO:DAN" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/PR_000009127", "lbl": "integrin alpha-IIb", @@ -513055,6 +514820,38 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/PR_000045358", + "lbl": "insulin family protein", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "protein" + } + ], + "comments": [ + "Category=family." + ], + "definition": { + "val": "A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide.", + "xrefs": [ + "PRO:DAN" + ] + }, + "synonyms": [ + { + "pred": "hasExactSynonym", + "synonymType": "http://purl.obolibrary.org/obo/pr#PRO-short-label", + "val": "fam:INS", + "xrefs": [ + "PRO:DAN" + ] + } + ] + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/PR_000050216", "lbl": "receptor-type tyrosine-protein phosphatase C isoform CD45R", @@ -541144,6 +542941,10 @@ "pred": "http://purl.obolibrary.org/obo/UBPROP_0000202", "val": "http://purl.obolibrary.org/obo/FMA_75572" }, + { + "pred": "http://purl.org/dc/terms/date", + "val": "2022-06-10T18:22:34Z" + }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "uberon" @@ -541168,7 +542969,7 @@ ], "synonyms": [ { - "pred": "hasRelatedSynonym", + "pred": "hasNarrowSynonym", "synonymType": "http://purl.obolibrary.org/obo/uberon/core#PLURAL", "val": "genitalia" }, @@ -541181,7 +542982,7 @@ ] }, { - "pred": "hasRelatedSynonym", + "pred": "hasNarrowSynonym", "val": "genital system" }, { @@ -542510,7 +544311,7 @@ } ], "definition": { - "val": "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products..", + "val": "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.", "xrefs": [ "DOI:10.1371/journal.pone.0099864", "GO:0072001" @@ -542524,7 +544325,7 @@ ], "synonyms": [ { - "pred": "hasExactSynonym", + "pred": "hasBroadSynonym", "val": "excretory system" }, { @@ -542539,13 +544340,6 @@ "pred": "hasRelatedSynonym", "val": "renal/urinary system" }, - { - "pred": "hasExactSynonym", - "val": "renal system", - "xrefs": [ - "GO:0001977" - ] - }, { "pred": "hasExactSynonym", "val": "systema urinaria", @@ -552318,7 +554112,7 @@ } ], "definition": { - "val": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO].", + "val": "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO].", "xrefs": [ "GO:0031016" ] @@ -573684,10 +575478,6 @@ "lbl": "visual system", "meta": { "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/RO_0002171", - "val": "http://purl.obolibrary.org/obo/UBERON_0002105" - }, { "pred": "http://purl.obolibrary.org/obo/UBPROP_0000001", "val": "The sensory system used for sight.[AAO]" @@ -574301,7 +576091,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0002110", - "lbl": "gall bladder", + "lbl": "gallbladder", "meta": { "basicPropertyValues": [ { @@ -574384,9 +576174,9 @@ }, { "pred": "hasExactSynonym", - "val": "gallbladder", + "val": "cholecyst", "xrefs": [ - "FMA:7202" + "WikipediaVersioned:Gallbladder&oldid=1092217922" ] } ], @@ -607843,7 +609633,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0003942", - "lbl": "somatic sensory system", + "lbl": "somatosensory system", "meta": { "basicPropertyValues": [ { @@ -607880,13 +609670,6 @@ { "pred": "hasExactSynonym", "val": "system for detection of somatic senses" - }, - { - "pred": "hasExactSynonym", - "val": "somatosensory system", - "xrefs": [ - "NLXANAT:090818" - ] } ], "xrefs": [ @@ -612091,7 +613874,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004240", - "lbl": "gall bladder smooth muscle", + "lbl": "gallbladder smooth muscle", "meta": { "basicPropertyValues": [ { @@ -612108,49 +613891,46 @@ "synonyms": [ { "pred": "hasExactSynonym", - "val": "gall bladder involuntary muscle", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gallbladder smooth muscle tissue" }, { "pred": "hasExactSynonym", - "val": "gall bladder non-striated muscle", + "val": "gall bladder involuntary muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gall bladder smooth muscle tissue", + "val": "gall bladder non-striated muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder involuntary muscle", + "val": "gall bladder smooth muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder non-striated muscle", + "val": "gall bladder smooth muscle tissue", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder smooth muscle", + "val": "gallbladder involuntary muscle", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder smooth muscle tissue", + "val": "gallbladder non-striated muscle", "xrefs": [ "OBOL:automatic" ] @@ -619012,7 +620792,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004781", - "lbl": "gall bladder lamina propria", + "lbl": "gallbladder lamina propria", "meta": { "basicPropertyValues": [ { @@ -619029,21 +620809,18 @@ "synonyms": [ { "pred": "hasExactSynonym", - "val": "gall bladder lamina propria mucosa", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gallbladder lamina propria mucosa" }, { "pred": "hasExactSynonym", - "val": "gallbladder lamina propria", + "val": "gall bladder lamina propria", "xrefs": [ "OBOL:automatic" ] }, { "pred": "hasExactSynonym", - "val": "gallbladder lamina propria mucosa", + "val": "gall bladder lamina propria mucosa", "xrefs": [ "OBOL:automatic" ] @@ -619184,7 +620961,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0004783", - "lbl": "gall bladder serosa", + "lbl": "gallbladder serosa", "meta": { "basicPropertyValues": [ { @@ -619210,14 +620987,11 @@ }, { "pred": "hasExactSynonym", - "val": "gall bladder serous membrane", - "xrefs": [ - "OBOL:automatic" - ] + "val": "gall bladder serous membrane" }, { "pred": "hasExactSynonym", - "val": "gallbladder serosa", + "val": "gall bladder serosa", "xrefs": [ "OBOL:automatic" ] @@ -635242,7 +637016,7 @@ }, { "id": "http://purl.obolibrary.org/obo/UBERON_0006242", - "lbl": "gall bladder primordium", + "lbl": "gallbladder primordium", "meta": { "basicPropertyValues": [ { @@ -635260,6 +637034,12 @@ "subsets": [ "http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2" ], + "synonyms": [ + { + "pred": "hasExactSynonym", + "val": "gall bladder primordium" + } + ], "xrefs": [ { "val": "EHDAA2:0000700" @@ -670168,40 +671948,6 @@ }, "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/UBERON_3011048", - "lbl": "genital system", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/UBPROP_0000004", - "val": "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" - }, - { - "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val": "uberon" - } - ], - "definition": { - "val": "Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs.", - "xrefs": [ - "XAO:0000142", - "https://www.merriam-webster.com/dictionary/genitalia" - ] - }, - "synonyms": [ - { - "pred": "hasBroadSynonym", - "val": "genitalia" - }, - { - "pred": "hasBroadSynonym", - "val": "reproductive system" - } - ] - }, - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/UBERON_4000013", "lbl": "mineralized skeletal tissue", @@ -671124,6 +672870,33 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/UBERON_8450002", + "lbl": "excretory system", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", + "val": "http://orcid.org/0000-0002-6095-8718" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2022-05-25T18:21:29Z" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val": "uberon" + } + ], + "definition": { + "val": "An anatomical system that eliminates waste products that arise as a result of metabolic activity.", + "xrefs": [ + "GO:0007588" + ] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/UBERON_8470000", "lbl": "placental blood", @@ -672260,21 +674033,11 @@ "lbl": "keratinizing barrier epithelial cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000240", - "lbl": "stratified squamous epithelial cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000257", "lbl": "Eumycetozoan cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0000287", - "lbl": "eye photoreceptor cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0000311", "lbl": "keratin accumulating cell", @@ -672355,11 +674118,6 @@ "lbl": "His-Purkinje system cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_0010008", - "lbl": "cardiac endothelial cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_0010020", "lbl": "cardiac glial cell", @@ -672380,16 +674138,6 @@ "lbl": "stomach neuroendocrine cell", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/CL_1000223", - "lbl": "lung neuroendocrine cell", - "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/CL_1000271", - "lbl": "lung ciliated cell", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/CL_1000272", "lbl": "lung secretory cell", diff --git a/pato.obo b/pato.obo index dfea138..0a8260a 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2022-08-10/pato.obo +data-version: releases/2022-08-31/pato.obo subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" @@ -22,7 +22,7 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of phen property_value: http://purl.org/dc/elements/1.1/title "PATO - the Phenotype And Trait Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ property_value: IAO:0000700 PATO:0000001 -property_value: owl:versionInfo "2022-08-10" xsd:string +property_value: owl:versionInfo "2022-08-31" xsd:string [Term] id: PATO:0000000 diff --git a/pato.owl b/pato.owl index 86c4a11..ed0d100 100644 --- a/pato.owl +++ b/pato.owl @@ -4,6 +4,7 @@ xmlns:cl="http://purl.obolibrary.org/obo/cl#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:go="http://purl.obolibrary.org/obo/go#" + xmlns:pr="http://purl.obolibrary.org/obo/pr#" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" @@ -12,7 +13,7 @@ xmlns:cito="http://purl.org/spar/cito/" xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" xmlns:foaf="http://xmlns.com/foaf/0.1/" - xmlns:obo1="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/" + xmlns:obo2="http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/" xmlns:pato="http://purl.obolibrary.org/obo/pato#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" @@ -21,23 +22,25 @@ xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/" - xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#2" - xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#3" - xmlns:chebi5="http://purl.obolibrary.org/obo/chebi#1" - xmlns:terms2="http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/" + xmlns:chebi3="http://purl.obolibrary.org/obo/chebi#" + xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#2" + xmlns:chebi5="http://purl.obolibrary.org/obo/chebi#3" + xmlns:chebi6="http://purl.obolibrary.org/obo/chebi#1" + xmlns:terms1="http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/" xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" - xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"> + xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#" + xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#"> - + An ontology of phenotypic qualities (properties, attributes or characteristics). PATO - the Phenotype And Trait Ontology quality 1.2 - 2022-08-10 + 2022-08-31 @@ -386,6 +389,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -460,6 +487,22 @@ + + + + + + + + + + + + + + + + @@ -596,12 +639,84 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -706,6 +821,22 @@ + + + + + + + + + + + + + + + + @@ -714,6 +845,86 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -30267,6 +30478,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119. + BTO:0000725 CALOHA:TS-0448 FMA:70337 @@ -30277,6 +30489,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual blood forming stem cell hemopoietic stem cell colony forming unit hematopoietic + Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative. hematopoietic stem cell @@ -30542,60 +30755,6 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. - BTO:0002881 - CALOHA:TS-2360 - FMA:86684 - NSC - neural stem cell - neuronal stem cell - - - - - - true - - - - - Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors. - GOC:tfm - MESH:D058953 - PMID:15247488 - http://en.wikipedia.org/wiki/Neural_stem_cell - - - - @@ -30647,6 +30806,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages. + BTO:0004730 CMP common myeloid precursor @@ -30656,6 +30816,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual multipotential myeloid stem cell myeloid stem cell pluripotent stem cell (bone marrow) + This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059). common myeloid progenitor @@ -30754,6 +30915,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell committed to the megakaryocyte and erythroid lineages. + CFU-EM CFU-MegE MEP @@ -30761,6 +30923,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual colony forming unit erythroid megakaryocyte megakaryocyte/erythrocyte progenitor megakaryocyte/erythroid progenitor cell + MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2. megakaryocyte-erythroid progenitor cell @@ -30807,6 +30970,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A oligopotent progenitor cell committed to the lymphoid lineage. + CL:0000044 CLP common lymphocyte precursor @@ -30817,6 +30981,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual early lymphocyte progenitor lymphoid stem cell lymphopoietic stem cell + CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative. common lymphoid progenitor @@ -30913,10 +31078,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. + BTO:0000452 CALOHA:TS-0362 FMA:63877 VHOG:0001482 + These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. fibroblast @@ -31013,6 +31180,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. + BTO:0000414 CALOHA:TS-2026 CARO:0000077 @@ -31020,6 +31188,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual FMA:66768 WBbt:0003672 epitheliocyte + epithelial cell @@ -31134,7 +31303,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the vasculature. + cuboidal endothelial cell of vascular tree + blood vessel endothelial cell @@ -31158,6 +31329,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube. + + columnar/cuboidal epithelial cell @@ -31187,8 +31360,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A flattened epithelial cell of mesenchymal origin that lines the serous cavity. + FMA:66773 mesotheliocyte + mesothelial cell @@ -31406,6 +31581,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. + CL:0000804 CL:0000812 BTO:0000782 @@ -31418,6 +31594,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual T-lymphocyte immature T cell mature T cell + T cell @@ -31540,11 +31717,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized phagocytic cell associated with the absorption and removal of the mineralized matrix of bone tissue, which typically differentiates from monocytes. This cell has the following markers: tartrate-resistant acid phosphatase type 5-positive, PU.1-positive, c-fos-positive, nuclear factor NF-kappa-B p100 subunit-positive, tumor necrosis factor receptor superfamily member 11A-positive and macrophage colony-stimulating factor 1 receptor-positive. + BTO:0000968 CALOHA:TS-0721 FMA:66781 MESH:D010010 chondroclast + Morphology: Highly vesicular; markers: Surface: RANK, cFMS (MCSF receptor); Secreted: cathepsin K and TRAP (tartate resistant acid phosphatase); transcription factors: PU.1, cFOS, MITF, NFkB (p52); role or process: tissue remodelling: bone resorption; lineage: hematopoietic, myeloid. osteoclast @@ -31672,6 +31851,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte with abundant granules in the cytoplasm. + BTO:0000539 BTO:0001026 CALOHA:TS-0422 @@ -31679,6 +31859,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual granular leucocyte granular leukocyte polymorphonuclear leukocyte + granulocyte @@ -31753,10 +31934,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. + BTO:0003811 FBbt:00005125 FMA:67313 WBbt:0005113 + interneuron @@ -31991,10 +32174,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm. + BTO:0001176 CALOHA:TS-0278 FMA:66772 endotheliocyte + From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]. endothelial cell @@ -32298,12 +32483,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. + CL:0000450 BTO:0000443 CALOHA:TS-0012 FMA:63880 adipocyte adipose cell + fat cell @@ -32438,6 +32625,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. + CL:0000572 BTO:0000847 CALOHA:TS-0613 @@ -32445,6 +32633,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual MESH:D008544 VHOG:0001679 melanophore + melanocyte @@ -32521,8 +32710,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that specializes in controlled release of one or more substances. + BTO:0003659 FMA:86916 + secretory cell @@ -32695,11 +32886,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium. + BTO:0004811 FMA:14119 Clara cell bronchiolar non-ciliated cell club cell of bronchiole + club cell @@ -32831,9 +33024,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. + BTO:0002691 FMA:83810 neurosecretory cell + neuroendocrine cell @@ -32934,6 +33129,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that secretes insulin and is located towards the center of the islets of Langerhans. + beta cell BTO:0000783 EV:0200009 @@ -32949,6 +33145,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual pancreatic islet core type B enteroendocrine cell beta cell islet + Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression. type B pancreatic cell @@ -33094,11 +33291,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon. + BTO:0000990 FMA:70585 MESH:D050416 alpha cell of islet of Langerhans pancreatic alpha cell + pancreatic A cell @@ -33167,6 +33366,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin. + BTO:0000803 FMA:70587 D-cell of pancreatic islet @@ -33175,6 +33375,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual pancreatic D-cell pancreatic delta cell somatostatin-secreting pancreatic cell + pancreatic D cell @@ -33245,9 +33446,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated. + BTO:0000575 CALOHA:TS-0454 FMA:14515 + Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive. hepatocyte @@ -33337,10 +33540,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A somatic cell located in skeletal muscle. + BTO:0004392 CALOHA:TS-2158 FMA:9727 skeletal muscle cell + cell of skeletal muscle @@ -33364,6 +33569,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). + CL:0000191 non-striated muscle cell BTO:0004576 @@ -33372,6 +33578,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual SMCs myocytes, smooth muscle smooth muscle fiber + smooth muscle cell @@ -33974,11 +34181,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. + BTO:0000424 CALOHA:TS-0290 FMA:81100 RBC red blood cell + erythrocyte @@ -34074,12 +34283,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells. + BTO:0000801 CALOHA:TS-0587 FMA:63261 FMA:83585 MESH:D008264 histiocyte + Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. macrophage @@ -34124,6 +34335,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + stratified squamous epithelial cell @@ -34142,8 +34355,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber. + FMA:70548 Merkel's cell + Merkel cell @@ -34235,6 +34450,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + eye photoreceptor cell @@ -34417,12 +34634,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell. + CL:0002185 BTO:0000667 CALOHA:TS-0500 FMA:62879 keratinized cell of epidermis malpighian cell + Keratinocytes are reportedly CDw210a-negative, CDw210b-positive, CD281-positive, CD282-positive, CD285-positive, IL22Ra1-positive, Human keratinocytes are reportedly capable of secreting BD-2, BD-3, hCAP-18, CXCL1, CXCL5, CXCL8, elafin, MMP-3, NGAL, PDGF-A, S100A7, S100A8, and S100A9. Transcription factors: STAT3-positive. keratinocyte @@ -34457,9 +34676,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid. + BTO:0003687 FMA:62511 serous cell + serous secreting cell @@ -34898,8 +35119,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell associated with the vasculature. + VSMC vascular smooth muscle cell + vascular associated smooth muscle cell @@ -35345,12 +35568,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative). + BTO:0002042 CALOHA:TS-0194 FMA:83036 MESH:D003713 interdigitating cell veiled cell + dendritic cell @@ -35605,6 +35830,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A peptide hormone secreting cell that secretes gastrin. + + gastrin secreting cell @@ -35800,10 +36027,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. + FMA:83043 plasmidotrophoblast syncytial trophoblast syntrophoblast + syncytiotrophoblast cell @@ -35821,8 +36050,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron which conveys sensory information centrally from the periphery. + FMA:87653 input neuron + afferent neuron @@ -35893,6 +36124,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. + BTO:0000938 CALOHA:TS-0683 FBbt:00005106 @@ -35900,6 +36132,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual VHOG:0001483 WBbt:0003679 nerve cell + These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. neuron @@ -35994,11 +36227,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin. + BTO:0000775 CALOHA:TS-0583 FMA:62863 MESH:D008214 VHOG:0001535 + Editors note: consider adding taxon constraint to vertebrata (PMID:18025161) lymphocyte @@ -36682,6 +36917,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative). + BTO:0001164 CALOHA:TS-0610 FMA:84235 @@ -36696,6 +36932,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual megakaryocytic progenitor cell promegacaryocyte promegakaryocyte + Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative. megakaryocyte progenitor cell @@ -36775,12 +37012,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm. + BTO:0000843 CALOHA:TS-0611 FMA:83555 megacaryocyte megalocaryocyte megalokaryocyte + Megakaryocytes are reportedly CD181-positive and CD182-positive. megakaryocyte @@ -37173,8 +37412,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte. This cell is CD11b-positive and has fine azurophil granules. + BTO:0004657 FMA:83551 + Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid. promonocyte @@ -37432,6 +37673,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + @@ -37461,9 +37703,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision. + BTO:0001036 CALOHA:TS-0866 FMA:67748 + retinal cone cell @@ -37498,11 +37742,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the cornea. + CL:1000431 BTO:0004298 CALOHA:TS-0173 FMA:70551 epithelial cell of cornea + corneal epithelial cell @@ -37574,9 +37820,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells. + BTO:0000876 CALOHA:TS-0638 FMA:62864 + Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. monocyte @@ -37756,9 +38004,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision. + BTO:0001024 CALOHA:TS-0870 FMA:67747 + retinal rod cell @@ -37822,8 +38072,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Undifferentiated; mitotic stem cell for other epithelial cell types; rounded or elliptical with little cytoplasm and few organelles; contain cytokeratin intermediate filament. + BTO:0000939 FMA:62516 + basal cell @@ -38310,12 +38562,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve. + BTO:0001800 FMA:67765 MESH:D012165 RGC gangliocyte ganglion cell of retina + retinal ganglion cell @@ -38374,6 +38628,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. + FMA:83808 cardiocyte BTO:0001539 @@ -38384,6 +38639,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual cardiac myocyte cardiomyocyte heart muscle cell + This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. cardiac muscle cell @@ -38447,6 +38703,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer. + + retinal bipolar neuron @@ -38481,9 +38739,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage. + BTO:0001441 CALOHA:TS-0647 MESH:D022423 + myeloid cell @@ -38506,11 +38766,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A immature or mature cell in the lineage leading to and including erythrocytes. + CL:0002156 CALOHA:TS-0290 FMA:62845 FMA:83516 erythropoietic cell + Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes. erythroid lineage cell @@ -38773,6 +39035,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes. + PMN poly polymorphonuclear leucocyte @@ -38789,6 +39052,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual neutrophil leukocyte neutrophilic leucocyte neutrophilic leukocyte + neutrophil @@ -38877,6 +39141,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized mononuclear osteoclast associated with the absorption and removal of bone, precursor of multinuclear osteoclasts. + + Morphology: mononuclear, highly vesicular. mononuclear osteoclast @@ -38923,7 +39189,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized multinuclear osteoclast associated with the absorption and removal of bone. + multinucleated osteoclast + Morphology: multinucleated, highly vesicular. multinuclear osteoclast @@ -39293,8 +39561,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, that has distinct nucleoli, a nuclear-to-cytoplasmic ratio of 5:1 to 3:1, and containing a few primary cytoplasmic granules. Markers for this cell are fucosyltransferase FUT4-positive, CD33-positive, integrin alpha-M-negative, low affinity immunoglobulin gamma Fc region receptor III-negative, and CD24-negative. + CALOHA:TS-0825 FMA:83530 + promyelocyte @@ -39480,10 +39750,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans. + BTO:0000725 CALOHA:TS-0448 MPP hemopoietic progenitor cell + Markers differ between mouse and human. hematopoietic multipotent progenitor cell @@ -39840,6 +40112,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Conventional dendritic cell is a dendritic cell that is CD11c-high. + interdigitating cell veiled cell FMA:84191 @@ -39847,6 +40120,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual cDC dendritic reticular cell type 1 DC + Originally described in the dendritic cell ontology (DC_CL:0000003)(PMID:19243617) These cells are also CD20-negative, MHCII-positive. conventional dendritic cell @@ -40790,7 +41064,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A connective tissue cell found in bone. - adiehl + 2011-11-16T04:28:16Z bone cell @@ -40862,7 +41136,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A monocyte that expresses CD14 and is negative for the lineage markers CD3, CD19, and CD20. + monocyte + This cell type is compatible with the HIPC Lyoplate markers for 'monocyte'. Note that while CD14 is considered a reliable marker for human monocytes, it is only expressed on approximately 85% of mouse monocytes. CD14-positive monocyte @@ -41164,7 +41440,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers. - tmeehan + 2010-01-06T03:43:27Z hematopoietic oligopotent progenitor cell, lineage-negative @@ -41200,8 +41476,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models. - - 2017-01-30T18:53:32Z + + 2017-01-30T18:53:32Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12913 https://github.com/obophenotype/cell-ontology/issues/448 abnormal cell @@ -41239,8 +41515,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. - - 2017-01-30T19:16:26Z + + 2017-01-30T19:16:26Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12922 tumor cell tumour cell @@ -41280,8 +41556,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neoplastic cell that is capable of entering a surrounding tissue - - 2017-01-30T19:39:12Z + + 2017-01-30T19:39:12Z https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12917 cancer cell https://github.com/obophenotype/cell-ontology/issues/448 @@ -41557,7 +41833,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An erythroid progenitor cell is Kit-positive, Ly6A-negative, CD41-negative, CD127-negative, and CD123-negative. This cell type is also described as being lin-negative, Kit-positive, CD150-negative, CD41-negative, CD105-positive, and FcgR-negative. - tmeehan + 2010-04-26T10:14:16Z c- Kit-positive erythroid progenitor cell Markers found on mouse cells. @@ -41623,7 +41899,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A granulocyte monocyte progenitor is CD34-positive, CD38-positive, IL-3receptor-alpha-positive and is CD45RA-negative. - tmeehan + 2010-01-13T03:19:22Z Markers are for human cells. According to different research groups, CD45RA is present or absent on this cell population. CD34-positive, CD38-positive granulocyte monocyte progenitor @@ -41697,7 +41973,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative. - tmeehan + 2010-01-13T03:43:10Z Markers are associated with human cell type. CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell @@ -41801,7 +42077,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low. - tmeehan + 2010-01-13T03:43:12Z Markers are associated with mouse cells. Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell @@ -41864,7 +42140,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell that can give rise to plasmacytoid and myeloid dendritic cells, and to monocytes and macrophages. - tmeehan + 2010-01-19T02:51:58Z MDP macrophage dendritic cell progenitor @@ -41953,7 +42229,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A proerythoblast that is Kit-low, Lyg76-positive, and CD71-positive. - tmeehan + 2010-04-26T10:31:56Z Markers are associated with mouse cells. Kit-low proerythroblast @@ -42033,7 +42309,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A basophilic erythroblast that is Lyg 76-high and is Kit-negative. - tmeehan + 2010-04-26T10:41:22Z Cell surface markers are associated with mouse cells. Kit-negative, Ly-76 high basophilic erythroblast @@ -42113,7 +42389,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A polychromatophilic erythroblast that is Lyg 76-high and is Kit-negative. - tmeehan + 2010-04-26T10:53:11Z late basophilic and polychromatophilic erythroblast Kit-negative, Ly-76 high polychromatophilic erythroblast @@ -42203,7 +42479,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative. - tmeehan + 2010-04-26T11:04:15Z Cell surface markers associated with mouse cells. Kit-negative, Ly-76 high orthochromatophilic erythroblasts @@ -42253,7 +42529,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte that is Ly76-high and is Kit-negative. - tmeehan + 2010-04-26T11:37:00Z Marker associated with mouse cells. Ly-76 high reticulocyte @@ -42303,7 +42579,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enucleate erythrocyte that is Lyg-76-high. - tmeehan + 2010-04-26T11:51:27Z Marker is associated with mouse cell types. Ly-76 high positive erythrocyte @@ -42355,7 +42631,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells. - tmeehan + 2010-01-06T03:43:20Z hematopoietic lineage restricted progenitor cell @@ -42398,7 +42674,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. - tmeehan + 2010-01-06T03:43:27Z This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060). hematopoietic oligopotent progenitor cell @@ -42456,7 +42732,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell capable of rapid replenishment of myeloerythroid progenitors and limited self renewal capability. This cell is Kit-positive, Sca1-positive, CD34-positive, CD150-positive, and is Flt3-negative. - tmeehan + 2010-01-08T09:19:25Z ST stem cell ST-HSC @@ -42526,7 +42802,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell with long term self renewal capability. This cell is Kit-positive, Sca1-positive, CD150-positive, CD90-low, CD34-negative and Flt3-negative. - tmeehan + 2010-01-08T09:19:28Z LT stem cell LT-HSC @@ -42608,7 +42884,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor that has restricted self-renewal capability. Cell is Kit-positive, Ly6-positive, CD150-negative and Flt3-negative. - tmeehan + 2010-01-08T11:16:33Z Markers are associated with mouse cells. Slamf1-negative multipotent progenitor cell @@ -42678,7 +42954,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic progenitor that has some limited self-renewal capability. Cells are lin-negative, Kit-positive, CD34-positive, and Slamf1-positive. - tmeehan + 2010-01-08T11:16:35Z KSL cell Markers are associated with mouse cells. @@ -42752,7 +43028,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic multipotent progenitor cell that is CD34-positive, CD38-negative, CD45RA-negative, and CD90-negative. - tmeehan + 2010-01-12T11:14:15Z Cell markers are associated with human hematopoietic multipotent progenitor cells. CD34-positive, CD38-negative multipotent progenitor cell @@ -42803,12 +43079,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules. - tmeehan + + 2010-06-24T03:16:29Z BTO:0000028 CALOHA:TS-0737 FMA:63032 acinar cell of pancreas + pancreatic acinar cell @@ -42846,7 +43124,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that produces glucagon. - tmeehan + 2010-09-10T10:48:54Z FMA:62939 type A enteroendocrine cell @@ -42866,7 +43144,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter. - tmeehan + 2010-06-28T08:36:15Z BTO:0001032 FMA:14146 @@ -42891,7 +43169,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery. - tmeehan + 2010-06-29T11:41:37Z pacemaker cell BTO:0004190 @@ -42922,7 +43200,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes. - tmeehan + 2010-06-29T02:39:32Z FMA:67142 transitional myocyte @@ -42943,7 +43221,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides). - tmeehan + 2010-06-29T11:50:47Z FMA:67111 myocardial endocrine cell @@ -42970,7 +43248,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell derived from endoderm. - tmeehan + 2010-06-29T03:38:14Z FMA:69075 endo-epithelial cell @@ -43008,7 +43286,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell derived from ectoderm. - tmeehan + 2010-06-29T03:38:22Z FMA:69074 ecto-epithelial cell @@ -43046,7 +43324,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cell derived from mesoderm or mesenchyme. - tmeehan + 2010-06-29T03:49:14Z FMA:69076 epithelial mesenchymal cell @@ -43096,9 +43374,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH. - tmeehan + + 2010-06-30T08:49:43Z FMA:63099 + pancreatic ductal cell @@ -43145,11 +43425,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types. - tmeehan + + 2010-06-30T08:49:52Z FMA:62455 centroacinar cell of Langerhans pancreatic centroacinar cell + pancreatic centro-acinar cell @@ -43169,7 +43451,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart. - tmeehan + 2010-07-21T01:33:38Z FMA:67968 specialized cardiac myocyte @@ -43206,7 +43488,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte that lacks granules. - tmeehan + 2010-07-22T11:30:33Z FMA:62855 agranular leukocyte @@ -43250,7 +43532,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise. - tmeehan + 2010-07-22T03:26:00Z BTO:0003914 FMA:86573 @@ -43304,7 +43586,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells. - tmeehan + 2010-07-22T04:48:15Z BTO:0004850 FMA:83621 @@ -43334,10 +43616,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell in the hilum of the ovary that produces androgens. - tmeehan + + 2010-08-23T11:18:18Z FMA:18710 hilar cell of ovary + hilus cell of ovary @@ -43372,7 +43656,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stomal cell of the ovary - tmeehan + 2010-08-23T12:10:31Z FMA:72299 ovarian stromal cell @@ -43398,7 +43682,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels. - tmeehan + 2010-08-24T02:06:40Z BTO:0001854 CALOHA:TS-1106 @@ -43441,11 +43725,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in capillaries. - tmeehan + + 2010-08-24T10:15:00Z BTO:0004956 CALOHA:TS-0112 FMA:67756 + capillary endothelial cell @@ -43469,9 +43755,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree. - tmeehan + + 2010-08-24T03:38:29Z FMA:70542 + ciliated columnar cell of tracheobronchial tree @@ -43506,7 +43794,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the uterus. - tmeehan + 2010-08-24T10:45:54Z CL:1000294 FMA:256161 @@ -43532,7 +43820,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Epithelial cells derived from general body ectoderm and ectoderm placodes. - tmeehan + 2010-08-26T08:31:08Z FMA:70556 general ecto-epithelial cell @@ -43570,7 +43858,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A keratinized cell located in the hard palate or gingiva. - tmeehan + 2010-08-26T02:51:30Z keratinized cell of the oral mucosa @@ -43606,7 +43894,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell found in the lining of the stomach. - tmeehan + 2010-08-25T03:22:08Z CL:1000399 FMA:62948 @@ -43649,7 +43937,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mucous cell in the epithelium of the stomach. - tmeehan + 2010-08-25T03:38:51Z CL:1000404 FMA:63464 @@ -43688,7 +43976,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit. - tmeehan + 2010-08-25T03:57:08Z CL:1000400 FMA:62953 @@ -43729,7 +44017,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A basally situated, mitotically active, columnar-shaped keratinocyte attached to the basement membrane. - tmeehan + 2010-08-26T03:12:49Z CL:1000439 FMA:70571 @@ -43773,7 +44061,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell involved in the formation of a granulocyte. - tmeehan + 2010-08-30T12:54:27Z FMA:83519 granulocytopoietic cell @@ -43815,7 +44103,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell involved in the formation of a monocyte (monopoiesis). - tmeehan + 2010-08-30T01:27:48Z FMA:83552 monopoietic cell @@ -43857,7 +44145,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell that can give rise to the cells of the liver. The term usually refers to the self-renewing pool of hepatocyte precursors in the adult liver (differently from 'hepatoblast', often used for fetal precursors of hepatocytes). - tmeehan + 2010-08-30T02:00:42Z FMA:86577 HpSC @@ -43909,7 +44197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the tracheobronchial tree. - tmeehan + 2010-09-02T02:09:14Z CL:1000407 FMA:66816 @@ -43929,7 +44217,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells. - tmeehan + 2010-09-02T02:53:59Z FMA:69060 undifferentiated columnar cell of tracheobronchial tree @@ -43958,7 +44246,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye. - tmeehan + 2010-09-07T10:38:03Z FMA:70950 vertebrate lens cell @@ -43996,9 +44284,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth. - tmeehan + + 2010-09-07T10:45:47Z FMA:67559 + lens epithelial cell @@ -44035,7 +44325,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast in the bone marrow. - tmeehan + 2010-09-07T02:25:18Z FMA:84377 marrow fibroblast @@ -44071,7 +44361,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell containing at least one nucleus. - tmeehan + 2010-09-07T03:32:33Z FMA:67513 nucleate cell @@ -44113,7 +44403,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells. - tmeehan + 2010-09-08T08:53:42Z FMA:70611 smooth muscle fiber of sphincter of pupil @@ -44160,7 +44450,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells). - tmeehan + 2010-09-07T03:57:09Z BTO:0002669 FMA:86711 @@ -44205,7 +44495,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus. - tmeehan + 2010-09-08T09:26:53Z epithelial cell of alimentary canal @@ -44241,7 +44531,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the esophagus. - tmeehan + 2010-09-08T09:28:20Z CL:1000402 FMA:63071 @@ -44284,7 +44574,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the large intestine. - tmeehan + 2010-09-08T09:28:22Z CL:1000292 BTO:0004297 @@ -44329,7 +44619,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the small intestine. - tmeehan + 2010-09-08T09:41:46Z CL:1000293 FMA:256159 @@ -44372,11 +44662,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Connective tissue cells of the endometrium, these cells are fibroblastic in appearance. During decidualization they tranform into decidual (stromal) cells, swellling up and adopt an epithelial cell-like appearance due to the accumulation of glycogen and lipid droplets. - tmeehan + + 2010-09-08T09:50:04Z CALOHA:TS-1266 FMA:86490 endometrial stromal cell + stromal cell of endometrium @@ -44401,7 +44693,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the mucosa associated with the facial skeleton. - tmeehan + 2010-09-14T10:40:12Z CL:1000446 FMA:70627 @@ -44439,10 +44731,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver. - tmeehan + + 2010-09-14T10:57:26Z CL:1000403 FMA:63134 + endothelial cell of sinusoid @@ -44472,7 +44766,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of enteroendocrine cell found in the stomach that secretes glucagon. - tmeehan + 2010-09-10T10:54:42Z FMA:83411 type A cell of stomach @@ -44503,7 +44797,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A D cell located in the colon. - tmeehan + 2010-09-10T11:37:35Z FMA:268744 colon D-cell @@ -44537,7 +44831,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type D cell of the small intestine. - tmeehan + 2010-09-10T01:34:22Z FMA:268736 delta cell of small intestine @@ -44571,7 +44865,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type D cell found in the stomach. - tmeehan + 2010-09-10T01:36:03Z FMA:83410 delta cell of stomach @@ -44616,7 +44910,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A PP cell located in the islets of the pancreas. - tmeehan + + 2010-09-10T03:30:31Z BTO:0000805 FMA:70588 @@ -44624,6 +44919,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual PP cell of pancreatic islet PP-cell of pancreatic islet pancreatic polypeptide-secreting cell + The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell. pancreatic PP cell @@ -44658,7 +44954,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of a skin gland. - tmeehan + 2010-09-14T12:00:07Z FMA:70657 epithelial cell of gland of skin @@ -44697,7 +44993,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell that is part of the nervous system. - tmeehan + 2010-09-15T01:34:57Z CALOHA:TS-2040 FMA:70333 @@ -44737,7 +45033,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. - tmeehan + 2010-09-15T03:01:54Z CL:1000406 CALOHA:TS-2096 @@ -44766,7 +45062,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the embryo. - tmeehan + 2010-09-15T03:39:21Z CALOHA:TS-0263 FMA:82840 @@ -44805,7 +45101,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the bronchus. - tmeehan + 2010-09-20T02:00:00Z BTO:0002922 bronchial epithelial cell @@ -44836,8 +45132,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated cell of the bronchus. - tmeehan + + 2010-09-20T02:21:12Z + ciliated cell of the bronchus @@ -44872,7 +45170,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell derived from a neural crest cell. - tmeehan + 2010-09-20T02:25:25Z neural crest derived fat cell @@ -44891,7 +45189,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the oral cavitiy including the mucosa of the gums, the palate, the lip, and the cheek. - tmeehan + 2010-09-20T02:52:54Z buccal mucosa cell @@ -44927,7 +45225,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin. - tmeehan + 2010-09-21T04:33:05Z CL:1000475 FMA:75621 @@ -44956,7 +45254,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1. - tmeehan + 2010-09-21T04:41:06Z pancreatic endocrine progenitor pancreatic islet progenitor cell @@ -44996,7 +45294,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell that exists during embryogenesis. - tmeehan + 2010-09-22T09:05:13Z gestational hematopoietic stem cell @@ -45032,7 +45330,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A hematopoietic stem cell of the placenta. This cell type is first observed E10.5 This cell type may give rise to fetal liver hematopoietic stem cells. - tmeehan + 2010-09-22T10:30:02Z placental hematopoietic stem cell @@ -45068,10 +45366,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate. - tmeehan + + 2010-09-22T01:57:40Z corneal fibroblast corneal keratocyte + keratocyte @@ -45106,7 +45406,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endo-epithelial cell of the respiratory tract. - tmeehan + 2010-09-23T04:38:49Z BTO:0004533 airway epithelial cell @@ -45142,7 +45442,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). - tmeehan + 2010-09-24T09:44:42Z BTO:0001268 FMA:72300 @@ -45191,7 +45491,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A transversely striated, synctial muscle cell, formed by the fusion of myoblasts. - tmeehan + 2010-09-24T01:13:01Z CL:0000369 FBbt:00005812 @@ -45223,7 +45523,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A giioblast cell that develops from a migratory neural crest cell. The SCP is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has no basal lamina. In rodents SCPs are the only cells in the Schwann cell linage that expresses Cdh19. - tmeehan + 2010-09-24T02:06:10Z Schwann cell precursor cell Schwann cell precursor @@ -45248,7 +45548,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons. - tmeehan + 2010-09-24T02:10:31Z Schwann cell ZFA:0001725 @@ -45282,7 +45582,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles. - tmeehan + 2010-10-15T09:24:05Z nucleated reticulocyte @@ -45331,7 +45631,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A reticulocyte lacking a nucleus and showing a basophilic reticulum under vital staining due to the presence of ribosomes. - tmeehan + 2010-10-15T09:24:08Z CALOHA:TS-0864 FMA:66785 @@ -45376,8 +45676,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. - http://orcid.org/0000-0002-1773-2692 - tmeehan + + 2010-11-10T02:51:34Z O-2A/OPC O2A/OPC @@ -45421,7 +45721,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual oligodendrocyte/type-2 astrocyte progenitor cell - http://orcid.org/0000-0002-0819-0473 + PMID:24133281 @@ -45467,7 +45767,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8_alpha-negative and is CD205-positive. - tmeehan + 2010-11-22T01:10:28Z DC.8-4-11b+ spleen double-negative dendritic cell @@ -45511,7 +45811,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A conventional dendritic cell that expresses CD11b (ITGAM). - tmeehan + 2010-11-23T01:50:05Z CD11b-positive dendritic cell @@ -45553,7 +45853,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that produces pigment in the dermis. - tmeehan + 2010-12-03T03:17:05Z dermal melanocyte @@ -45590,7 +45890,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that produces pigment in the epithelium. - tmeehan + 2010-12-03T03:17:14Z The text defintion reference to the MP term appears to reference an epidermal melanocyte term. This term represents any melanocyte in any epithelium. epithelial melanocyte @@ -45633,7 +45933,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium. - tmeehan + 2010-12-03T03:25:32Z retinal melanocyte @@ -45677,7 +45977,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell located in the heart, including both muscle and non muscle cells. - tmeehan + 2010-12-07T09:37:22Z BTO:0001539 CALOHA:TS-0115 @@ -45725,7 +46025,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc - tmeehan + 2010-12-07T04:03:56Z BTO:0002441 FMA:84639 @@ -45762,7 +46062,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the intestine. - tmeehan + 2011-01-17T03:39:38Z intestinal smooth muscle cell enteric smooth muscle cell @@ -45804,9 +46104,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell that is part of subcutaneous adipose tissue. - tmeehan + + 2011-02-21T02:51:22Z subcutaneous adipocyte + subcutaneous fat cell @@ -45846,7 +46148,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the intrahepatic portion of the bile duct. These cells are flattened or cuboidal in shape, and have a small nuclear-to-cytoplasmic ratio relative to large/extrahepatic cholangiocytes. - tmeehan + 2011-02-28T01:20:20Z small bile duct cholangiocyte intrahepatic cholangiocyte @@ -45895,7 +46197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the aorta. - tmeehan + 2011-02-28T01:42:12Z BTO:0004577 aortic smooth muscle cell @@ -45926,7 +46228,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell that is part of the bone marrow. - tmeehan + 2011-02-28T01:47:47Z mesenchymal stem cell of the bone marrow @@ -45961,7 +46263,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of the chorionic membrane. - tmeehan + 2011-02-28T03:04:35Z chorionic membrane mesenchymal stem cell @@ -45996,13 +46298,15 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the vein. - tmeehan + + 2011-02-28T03:48:11Z CL:1000393 FMA:62104 KUPO:0001099 endothelial cell of vein venous endothelial cell + vein endothelial cell @@ -46026,7 +46330,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial progenitor cell that participates in angiogenesis during development. - tmeehan + 2011-02-28T04:20:39Z See CL:0002619. embryonic blood vessel endothelial progenitor cell @@ -46062,7 +46366,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of the aortic adventitia. - tmeehan + 2011-02-28T04:43:41Z fibroblast of the aortic adventitia @@ -46104,7 +46408,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of the heart. - tmeehan + 2011-02-28T04:57:44Z cardiac fibroblast fibroblast of cardiac tissue @@ -46151,7 +46455,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + 2011-02-28T05:05:33Z fibroblast of dermis @@ -46186,7 +46490,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of lung. - tmeehan + 2011-02-28T05:11:03Z BTO:0000764 CALOHA:TS-0575 @@ -46229,7 +46533,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of pulmonary artery. - tmeehan + 2011-02-28T05:22:27Z fibroblast of pulmonary artery @@ -46270,7 +46574,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the intestine. - tmeehan + 2011-03-01T05:18:31Z intestinal epithelial cell @@ -46305,7 +46609,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of adipose tissue. - tmeehan + 2011-03-01T09:57:17Z mesenchymal stem cell of adipose mesenchymal stem cell of adipose tissue @@ -46336,7 +46640,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesenchymal stem cell of liver. - tmeehan + 2011-03-01T09:58:51Z hepatic mesenchymal stem cell @@ -46377,11 +46681,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. - tmeehan + + 2011-03-02T01:19:27Z BTO:0001220 CALOHA:TS-0898 MESH:D012583 + Schwann cell @@ -46415,8 +46721,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell of the pancreas. - tmeehan + + 2011-03-02T02:40:41Z + stromal cell of pancreas @@ -46457,7 +46765,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the placenta. - tmeehan + 2011-03-02T03:21:30Z placental epithelial cell @@ -46499,8 +46807,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A blood vessel endothelial cell that is part of the retina. - tmeehan + + 2011-03-06T03:28:27Z + retinal blood vessel endothelial cell @@ -46540,7 +46850,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the bachiocephalic vasculature. - tmeehan + 2011-03-06T05:00:58Z smooth muscle cell of the brachiocephalic vasculature @@ -46576,7 +46886,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A vascular associated smooth muscle cell of the brain vasculature. - tmeehan + 2011-03-06T05:01:20Z smooth muscle cell of the brain vasculature @@ -46617,9 +46927,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle of the pulmonary artery. - tmeehan + + 2011-03-06T05:01:28Z BTO:0003336 + smooth muscle cell of the pulmonary artery @@ -46653,7 +46965,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the subclavian artery. - tmeehan + 2011-03-06T05:01:52Z smooth muscle cell of the subclavian artery @@ -46688,7 +47000,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Smooth muscle cell of the carotid artery. - tmeehan + 2011-03-06T05:01:56Z smooth muscle cell of the carotid artery @@ -46722,9 +47034,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + + 2011-03-06T05:46:39Z BTO:0004402 + bronchial smooth muscle cell @@ -46752,7 +47066,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the esophagus. - tmeehan + 2011-03-06T05:48:17Z smooth muscle cell of the esophagus @@ -46793,7 +47107,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the trachea. - tmeehan + 2011-03-06T05:50:28Z smooth muscle cell of trachea @@ -46828,7 +47142,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell of the uterus. - tmeehan + 2011-03-06T05:53:28Z uterine smooth muscle cell @@ -46870,7 +47184,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron of the raphe nuclei. - tmeehan + 2011-03-06T07:42:06Z raphe nuclei neuron @@ -46912,7 +47226,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron of the ventral spinal cord. - tmeehan + 2011-03-06T07:46:03Z neuron of the ventral spinal cord @@ -46953,10 +47267,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast of skin. - tmeehan + + 2011-03-14T12:31:49Z BTO:0001255 CALOHA:TS-0935 + skin fibroblast @@ -46995,7 +47311,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - tmeehan + 2011-06-21T12:29:31Z epithelial cell of lower respiratory tract @@ -47030,7 +47346,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the anal column. - tmeehan + 2011-07-08T12:11:38Z epithelial cell of anal column @@ -47061,7 +47377,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the anal canal that is keratinized. This cell type is found towards the lower, rectal end of the anal canal. - tmeehan + 2011-07-08T02:08:40Z keratinized epithelial cell of the anal canal @@ -47096,7 +47412,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the endometrium. - tmeehan + 2011-07-08T03:54:08Z FMA:86489 glandular cell of endometrium @@ -47127,7 +47443,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the esophagus. - tmeehan + 2011-07-08T03:55:57Z FMA:86548 glandular cell of esophagus @@ -47170,7 +47486,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell of the large intestine. - tmeehan + 2011-07-08T04:03:01Z FMA:87194 glandular cell of the large intestine @@ -47207,7 +47523,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glandular epithelial cell that is part of the stomach. - tmeehan + 2011-07-11T01:20:35Z CALOHA:TS-1284 FMA:86554 @@ -47250,7 +47566,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A myocardial endocrine cell that is part of the atrium. - tmeehan + 2011-07-11T02:45:39Z FMA:83389 myocardial endocrine cell of atrium @@ -47275,7 +47591,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart. - tmeehan + 2011-07-11T03:15:38Z CPC cardiovascular progenitor cell @@ -47316,7 +47632,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells. - tmeehan + 2011-08-16T02:38:01Z retinal progenitor cell @@ -47353,7 +47669,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A skeletal muscle cell that is part of the tongue. - tmeehan + 2011-08-16T03:10:02Z tongue muscle cell @@ -47379,7 +47695,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuroblast derived from a neural crest cell. - tmeehan + 2011-08-22T09:24:15Z neural crest derived neuroblast @@ -47410,7 +47726,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A PP cell found in intestine. - tmeehan + 2011-09-27T11:59:01Z PP cell of intestine @@ -47517,7 +47833,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). - haendel + 2012-06-15T02:51:27Z scleroblast Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts) @@ -47555,7 +47871,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells. - haendel + 2012-06-27T08:27:35Z premigratory neural crest cell @@ -47573,7 +47889,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. - haendel + 2012-06-27T10:44:01Z prechondroblast @@ -47880,6 +48196,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endocrine cell that is part of the pancreas. + + pancreatic endocrine cell @@ -47912,7 +48230,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - dos + 2017-07-09T19:12:36Z visual system neuron @@ -47948,9 +48266,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation. - dos + + 2020-02-29T17:33:55Z + mural cell @@ -47984,7 +48304,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - dos + 2020-02-29T17:37:00Z microcirculation associated smooth muscle cell @@ -48127,7 +48447,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the small intestine. - + small intestine enteroendocrine cell enteroendocrine cell of small intestine @@ -48163,9 +48483,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte that resides in the lamina propria of the large intestine. - + + lamina propria lymphocyte of large intestine + This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. lymphocyte of large intestine lamina propria @@ -48200,7 +48522,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the large intestine. - + stromal cell of lamina propria of large intestine @@ -48235,7 +48557,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the small intestine. - + stromal cell of lamina propria of small intestine @@ -48265,7 +48587,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the small intestine. - + mesothelial cell of small intestine @@ -48295,7 +48617,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the colon. - + mesothelial cell of large intestine mesothelial cell of colon @@ -48332,7 +48654,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A macrophage that is located in the colon. - + macrophage of colon This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48369,7 +48691,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the colon. - + stromal cell of colon lamina propria stromal cell of lamina propria of colon @@ -48400,7 +48722,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the colon. - + colon enteroendocrine cell enteroendocrine cell of colon @@ -48436,7 +48758,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A lymphocyte that resides in the lamina propria of the small intestine. Lamina propria leukocytes and intraepithelial lymphocytes are the effector compartments of the gut mucosal immune system. Lymphocytes circulate through gut associated lymphoid tissues until recruitment by intestinal antigens. They are involved in the gut immune response. - + gastrointestinal tract small intestine (lamina propria) leukocyte small intestine lamina propria leukocyte small intestine lamina propria leukocyte (LPL) @@ -48479,7 +48801,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A macrophage that is located in the anorectum. - + macrophage of anorectum This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48516,7 +48838,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A T cell that is located in the anorectum. - + This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. T cell of anorectum @@ -48552,7 +48874,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is located in the anorectum. - + anorectum smooth muscle cell smooth muscle cell of anorectum @@ -48592,7 +48914,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell found in the lamina propria of the anorectum. - + stromal cell of anorectum lamina propria @@ -48628,7 +48950,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An enteroendocrine cell that is located in the anorectum. - + anorectum enteroendocrine cell enteroendocrine cell of anorectum @@ -48665,7 +48987,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stratified squamous epithelial cell that is part of the anal canal. - + anal canal stratified squamous epithelial cell This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you. @@ -48702,8 +49024,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell that is part of an endometrial gland. - 2021-11-30T16:13:30Z - + + 2021-11-30T16:13:30Z EFO:0010710 endometrial glandular epithelial cell @@ -48736,8 +49058,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a placenta. - 2021-12-13T13:53:01Z - + + 2021-12-13T13:53:01Z EFO:0010708 placental endothelial cell @@ -48775,8 +49097,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of a placenta. - 2021-12-13T13:56:42Z - + + 2021-12-13T13:56:42Z EFO:0010709 placental smooth muscle cell @@ -48814,8 +49136,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a hepatic portal vein. - 2021-12-13T14:01:05Z - + + 2021-12-13T14:01:05Z portal endothelial cell EFO:0010704 @@ -48854,8 +49176,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of a uterus. - 2021-12-13T14:39:25Z - + + 2021-12-13T14:39:25Z EFO:0010711 uterine endothelial cell @@ -48893,8 +49215,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development. - 2022-02-21T15:39:10Z - + + 2022-02-21T15:39:10Z embryonic skeletal muscle fiber @@ -48930,8 +49252,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast located in the portal triad. Hepatic portal fibroblast are a non-parenchymal cell population located adjacent to bile duct epithelia in liver and are distinct from stellate cells. They differentiate into fibrogenic myofibroblasts during chronic injury states producing high levels of collagen. - 2022-03-17T12:00:44Z - + + 2022-03-17T12:00:44Z portal fibroblast hepatic portal fibroblast @@ -48963,7 +49285,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A stromal cell that is part_of a bone marrow. - GOC:cjm + bone marrow stromal cell stromal cell of bone marrow @@ -48987,7 +49309,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mononuclear cell that is part_of a bone marrow. - GOC:cjm + bone marrow mononuclear cell mononuclear cell of bone marrow @@ -49064,6 +49386,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + cardiac endothelial cell @@ -49118,7 +49442,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A CNS neuron of the cerebral cortex. - + CL:0002609 BTO:0004102 FMA:84104 @@ -49356,7 +49680,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the epicardium. - + mesothelial cell of epicardium @@ -49384,7 +49708,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of upper back skin. - + fibroblast of upper back skin @@ -49412,7 +49736,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fibroblast that is part of skin of back. - + fibroblast of skin of back @@ -49440,7 +49764,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses. - + progenitor cell @@ -49470,7 +49794,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of skeletal muscle tissue. - + skeleton muscle fibroblast skeletal muscle fibroblast @@ -49501,7 +49825,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of the dermis. - + DMEC cell dermal microvascular endothelium cell dermal microvascular endothelial cell @@ -49641,7 +49965,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A CNS neuron of the forebrain. - tberardini + forebrain neuron neuron of the forebrain @@ -49676,7 +50000,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain. - tmeehan + 2010-05-25T01:36:34Z neutrophillic cytoplasm @@ -49711,7 +50035,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain. - tmeehan + 2009-12-22T04:23:25Z eosinophilic acidophilic cytoplasm @@ -49747,7 +50071,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions. - tmeehan + 2009-12-22T04:24:54Z basophilic cytoplasm @@ -49782,7 +50106,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions. - tmeehan + 2009-12-28T04:25:23Z polychromatophilic cytoplasm @@ -49817,7 +50141,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell. - tmeehan + 2009-12-23T10:53:24Z increased nucleus size @@ -49852,7 +50176,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin. - tmeehan + 2009-12-23T02:31:25Z reniform nucleus @@ -49913,8 +50237,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any serous secreting cell that is part of the tracheobronchial epithelium. - - 2020-05-07T16:03:27Z + + 2020-05-07T16:03:27Z serous cell of tracheobronchial tree tracheobronchial serous cell @@ -49944,10 +50268,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any chondrocyte that is part of the tracheobronchial tree. - - 2020-05-07T17:29:51Z + + + 2020-05-07T17:29:51Z chondrocyte of tracheobronchial tree + tracheobronchial chondrocyte @@ -49975,9 +50301,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of any blood vessel. - - 2020-07-21T12:42:48Z + + + 2020-07-21T12:42:48Z smooth muscle cell of blood vessel + blood vessel smooth muscle cell @@ -50011,9 +50339,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of the tracheobronchial tree. - - 2020-07-21T12:50:22Z + + + 2020-07-21T12:50:22Z smooth muscle cell of tracheobronchial tree + tracheobronchial smooth muscle cell @@ -50047,8 +50377,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the extrahepatic bile ducts, including the left and right hepatic duct, common hepatic duct, and common bile duct. They are columnar in shape, and have a large nuclear-to-cytoplasmic ratio relative to small/intrahepatic cholangiocytes. - - 2020-09-03T12:24:24Z + + 2020-09-03T12:24:24Z large bile duct cholangiocyte extrahepatic cholangiocyte @@ -50089,8 +50419,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid. - - 2020-09-09T13:56:47Z + + 2020-09-09T13:56:47Z EFO:0010705 periportal LSEC periportal hepatic sinusoidal endothelial cell @@ -50139,8 +50469,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid. - - 2020-09-10T12:38:29Z + + 2020-09-10T12:38:29Z EFO:0010706 central venous hepatic sinusoidal endothelial cell pericentral LSEC @@ -50232,6 +50562,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + lung neuroendocrine cell @@ -50259,6 +50591,8 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + lung ciliated cell @@ -50416,8 +50750,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A smooth muscle cell that is part of the large intestine. + FMA:15653 non-striated muscle fiber of large intestine + smooth muscle cell of large intestine @@ -50752,9 +51088,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A fat cell that is part of the epicardial fat. + FMA:261293 adipocyte of epicardial fat epicardial fat cell + epicardial adipocyte @@ -51156,11 +51494,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates. + BTO:000125 FMA:62911 LSEC endotheliocyte of hepatic sinusoid liver sinusoidal endothelial cell + endothelial cell of hepatic sinusoid @@ -51355,8 +51695,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the arteriole. + FMA:67760 KUPO:0001097 + endothelial cell of arteriole @@ -51396,11 +51738,13 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A blood vessel endothelial cell that is part of an arterial endothelium. + CL:0002542 BTO:0004758 FMA:67761 KUPO:0001095 arterial endothelial cell + endothelial cell of artery @@ -51434,7 +51778,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An endothelial cell that is part of the venule. + FMA:67762 + endothelial cell of venule @@ -51476,7 +51822,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell that is part of the gallbladder. FMA:67780 - epithelial cell of gall bladder + epithelial cell of gallbladder @@ -51730,7 +52076,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the visceral peritoneum. + FMA:72143 + mesothelial cell of visceral peritoneum @@ -51764,9 +52112,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte that is part of the skin of body. + CALOHA:TS-2374 FMA:72144 skin melanocyte + melanocyte of skin @@ -52123,7 +52473,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A mesothelial cell that is part of the visceral pleura. + FMA:86739 + mesothelial cell of visceral pleura @@ -52157,8 +52509,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An epithelial cell of the exocrine pancreas. + FMA:70986 exocrine pancreas cell + epithelial cell of exocrine pancreas @@ -52248,8 +52602,10 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + BTO:0001141 PAEC cell + pulmonary artery endothelial cell @@ -52585,29 +52941,29 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - Glandular cell of gall bladder epithelium. + Glandular cell of gallbladder epithelium. CALOHA:TS-1278 + gall bladder glandular cell gall bladder glandular cells - gallbladder glandular cell gallbladder glandular cells - gall bladder glandular cell + gallbladder glandular cell - Glandular cell of gall bladder epithelium. + Glandular cell of gallbladder epithelium. NPX:PDR - - gall bladder glandular cells - CALOHA:TS-1278 + + gall bladder glandular cell + FMA:7202 - gallbladder glandular cell + gall bladder glandular cells CALOHA:TS-1278 @@ -52749,10 +53105,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts. + BTO:0000028 CALOHA:TS-1242 exocrine pancreas glandular cell pancreas exocrine glandular cells + pancreas exocrine glandular cell @@ -52980,7 +53338,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any melanocyte that is part of a epidermis. - TermGenie + 2014-02-03T23:03:09Z CL:2000000 These cells are found primarily, but not exclusively, in primates including humans @@ -53018,7 +53376,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. - TermGenie + 2014-02-11T17:29:04Z CL:2000001 peripheral blood mononuclear cell @@ -53054,7 +53412,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any macroglial cell that is part of a brain. - TermGenie + 2014-03-28T21:35:27Z CL:2000005 brain macroglial cell @@ -53090,9 +53448,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any blood vessel endothelial cell that is part of a microvascular endothelium. - TermGenie + + 2014-06-04T15:07:42Z CL:2000008 + microvascular endothelial cell @@ -53126,7 +53486,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any blood vessel endothelial cell that is part of a dermis. - TermGenie + 2014-06-04T15:12:06Z CL:2000010 dermis blood vessel endothelial cell @@ -53162,7 +53522,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any skin fibroblast that is part of a skin of abdomen. - TermGenie + 2014-06-04T15:18:16Z CL:2000013 fibroblast of skin of abdomen @@ -53193,7 +53553,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any lung endothelial cell that is part of a microvascular endothelium. - TermGenie + 2014-06-04T16:00:56Z CL:2000016 lung microvascular endothelial cell @@ -53229,7 +53589,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any photoreceptor cell that is part of a compound eye. - TermGenie + 2014-06-24T23:16:45Z FBbt:00004211 CL:2000019 @@ -53267,7 +53627,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any native cell that is part of a inner cell mass. - TermGenie + 2014-06-24T23:16:53Z CL:2000020 inner cell mass cell @@ -53304,7 +53664,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any native cell that is part of a cardiac septum. - TermGenie + 2014-06-24T23:17:07Z CL:2000022 cardiac septum cell @@ -53340,7 +53700,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any oligodendrocyte that is part of a spinal cord. - TermGenie + 2014-06-25T00:23:50Z CL:2000025 spinal cord oligodendrocyte @@ -53376,7 +53736,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any neuron that is part of a central nervous system. - TermGenie + 2014-06-25T01:17:43Z CL:2000029 central nervous system neuron @@ -53412,7 +53772,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A neuron that is part of a peripheral nervous system. - TermGenie + 2014-06-25T02:28:17Z CL:0000111 FMA:84664 @@ -53453,7 +53813,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a embryo. - TermGenie + 2014-07-09T00:12:00Z CL:2000042 embryonic fibroblast @@ -53490,7 +53850,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a brain. - TermGenie + 2014-07-09T00:24:53Z CL:2000044 brain microvascular endothelial cell @@ -53526,7 +53886,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any cardiac muscle cell that is part of a cardiac ventricle. - TermGenie + 2014-08-12T20:50:28Z CL:2000046 ventricular cardiac muscle cell @@ -53563,7 +53923,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any motor neuron that is part of a brainstem. - TermGenie + 2014-10-02T23:52:53Z CL:2000047 brainstem motor neuron @@ -53599,7 +53959,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a spleen. - TermGenie + 2014-10-06T18:58:47Z CL:2000051 splenic fibroblast @@ -53635,9 +53995,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any endothelial cell that is part of a spleen. - TermGenie + + 2014-10-06T19:06:04Z CL:2000053 + http://www.sciencellonline.com/site/productInformation.php?keyword=5500 splenic endothelial cell @@ -53672,7 +54034,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any dendritic cell that is part of a liver. - TermGenie + 2014-10-06T19:16:11Z hepatic dendritic cell CL:2000055 @@ -53710,7 +54072,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A trophoblast of placental villi. These cells fuse to form synctial trophoplast - the placental side of the interface between the placenta and maternal blood sinusoids in the decidua. - TermGenie + 2014-10-07T17:48:27Z BTO:0006119 BTO:0006208 @@ -53758,7 +54120,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any mesenchymal stem cell that is part of a placenta. - TermGenie + 2014-10-07T17:51:11Z CL:2000061 http://www.sciencellonline.com/site/productInformation.php?keyword=7140 @@ -53796,9 +54158,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any capillary endothelial cell that is part of a placenta. - TermGenie + + 2014-10-07T17:55:56Z CL:2000062 + http://www.ncbi.nlm.nih.gov/books/NBK53245/ placental villus capillary endothelial cell @@ -53833,7 +54197,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a female gonad. - TermGenie + 2014-10-07T17:57:42Z CL:2000063 http://www.sciencellonline.com/site/productInformation.php?keyword=7330 @@ -53870,7 +54234,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any epithelial cell that is part of a female gonad. - TermGenie + 2014-10-07T17:59:13Z CL:2000064 http://www.sciencellonline.com/site/productInformation.php?keyword=7310 @@ -53907,9 +54271,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a cardiac ventricle. - TermGenie + + 2014-10-07T18:35:38Z CL:2000066 + http://www.sciencellonline.com/site/productInformation.php?keyword=6310 cardiac ventricle fibroblast @@ -53944,9 +54310,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a cardiac atrium. - TermGenie + + 2014-10-07T18:36:54Z CL:2000067 + http://www.sciencellonline.com/site/productInformation.php?keyword=6320 cardiac atrium fibroblast @@ -53981,7 +54349,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a pericardium. - TermGenie + 2014-10-07T18:38:06Z CL:2000068 http://www.sciencellonline.com/site/productInformation.php?keyword=6430 @@ -54018,7 +54386,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a gallbladder. - TermGenie + 2014-10-07T18:41:43Z CL:2000069 http://www.sciencellonline.com/site/productInformation.php?keyword=5430 @@ -54055,7 +54423,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast that is part of a optic choroid. - TermGenie + 2014-10-07T18:50:43Z CL:2000070 http://www.sciencellonline.com/site/productInformation.php?keyword=6620 @@ -54093,7 +54461,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a adipose tissue. - TermGenie + 2014-10-07T22:13:45Z CL:2000072 http://www.sciencellonline.com/site/productInformation.php?keyword=7200 @@ -54130,8 +54498,9 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any migratory neural crest cell that is part of a cardiac neural crest. - TermGenie + 2014-11-05T01:18:43Z + cardiac neural crest cell CL:2000073 migratory cardiac neural crest cell @@ -54141,6 +54510,12 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any migratory neural crest cell that is part of a cardiac neural crest. GOC:TermGenie + + + + cardiac neural crest cell + PMID:33060096 + @@ -54166,7 +54541,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any leukocyte that is part of a spleen. - TermGenie + 2014-11-05T01:26:50Z CL:2000074 Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology. @@ -54203,7 +54578,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any mesenchymal stem cell of adipose tissue that is part of an abdomen. - TermGenie + 2014-12-02T19:10:34Z mesenchymal stem cell of abdominal adipose CL:2000080 @@ -54240,7 +54615,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any melanocyte of skin that is part of a skin of face. - TermGenie + 2014-12-02T19:10:40Z CL:2000081 melanocyte of skin of face @@ -54277,9 +54652,11 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any microvascular endothelial cell that is part of a endometrial blood vessel. - TermGenie + + 2015-03-31T21:02:36Z CL:2000091 + endometrial microvascular endothelial cells @@ -54313,7 +54690,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any fibroblast of lung that is part of a bronchus. - TermGenie + 2015-03-31T21:16:22Z CL:2000093 bronchus fibroblast of lung @@ -54350,7 +54727,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A ciliated epithelial cell of the esophagus. - CellBLAST + 2019-02-09T16:40:30Z CL:3000000 ciliated epithelial cell of esophagus @@ -54382,7 +54759,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Peripheral sensory neuron. - CellBLAST + 2019-02-25T19:34:33Z CL:3000004 peripheral sensory neuron @@ -54424,7 +54801,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to structures of telencephalic origins. - + ILX:0770100 IT projecting neuron @@ -54466,7 +54843,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to structures not derived from telencephalon. - + ILX:0770101 ET projecting neuron @@ -54508,7 +54885,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects axons locally rather than distantly. - + ILX:0770103 NP neuron @@ -54550,7 +54927,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glutamatergic neuron located in the cerebral cortex that projects to the thalamus. - + CT projecting neuron corticothalamic-projecting glutamatergic cortical neuron @@ -54587,7 +54964,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has an apical tree which is oriented parallel to the pia. This is unlike typical pyramidal neurons which have its apical dendrite aligned vertically. - + horizontal pyramidal neuron @@ -54622,7 +54999,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A type of interneuron that has two clusters of dendritic branches that originate directly from the soma and extend in opposite directions and axons that form a plexus which spreads widely. Compared to bipolar neurons, bitufted neurons have branching that occur close to the soma. - + ILX:0777212 bitufted neuron @@ -54664,7 +55041,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual An interneuron that selectively innervates the axon initial segment of pyramidal cells. Their local axonal clusters are formed by high-frequency branching at shallow angles, often ramifying around, above or below their somata with a high bouton density. The characteristic terminal portions of the axon form short vertical rows of boutons, resembling a chandelier. Chandelier cells can be multipolar or bitufted. - + ILX:0777213 ChC @@ -54715,7 +55092,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has an apical tree which is oriented towards the white matter. - + inverted pyramidal neuron @@ -54751,7 +55128,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which lacks a tuft formation but extends small radial distances forming a star-like shape. - + stellate pyramidal neuron @@ -54787,7 +55164,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which has a distinctive tuft formation, distal from the soma. - + tufted pyramidal neuron @@ -54823,7 +55200,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron which lacks a clear tuft formation but extends to large radial distances. - + untufted pyramidal neuron @@ -54853,7 +55230,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A pyramidal neuron with soma located in the cerebral cortex. - + cerebral cortex pyramidal neuron @@ -54887,7 +55264,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A glial cell that myelinates axonal processes. - + CL:0000328 myelinating glial cell @@ -54900,6 +55277,74 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + An interneuron that has double bouquet morphology. + + double bouquet cell + + + + + An interneuron that has double bouquet morphology. + PMID:15378039 + + + + + + + + + + + + + + + + + + + + + + + + + + A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli. + + somatosensory neuron + + + + + A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli. + PMID:22865660 + + + + @@ -54917,7 +55362,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual Any capillary endothelial cell that is part of a lung. - + 2021-11-23T02:31:40Z lung capillary endothelial cell pulmonary capillary endothelial cell @@ -54947,7 +55392,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual A melanocyte located in the vascular uvea and involved in photoprotection, regulation of oxidative damage and immune responses. - http://orcid.org/0000-0002-1773-2692 + 2022-01-20T12:59:06Z uveal melanocyte Cellular functions and extracellular interactions of choroidal melanocytes are distinct to skin melanocytes. They might have both neuroectodermal as well as mesectodermal origins. @@ -75535,7 +75980,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -75638,7 +76083,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -87152,7 +87597,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -99767,7 +100212,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100053,7 +100498,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100118,7 +100563,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100188,7 +100633,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100384,7 +100829,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100483,7 +100928,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100645,7 +101090,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -100983,7 +101428,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -104180,6 +104625,27 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process. + Wikipedia:Nociception + nociception + perception of physiological pain + biological_process + GO:0019233 + sensory perception of pain + + + + + The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process. + GOC:curators + + + + @@ -139455,6 +139921,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + @@ -160724,6 +161191,71 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal. + perception of pain, detection of chemical stimulus + perception of pain, sensory detection of chemical stimulus + perception of pain, sensory transduction of chemical stimulus + sensory detection of chemical stimulus during perception of pain + sensory transduction of chemical stimulus during perception of pain + biological_process + chemical nociception + GO:0050968 + detection of chemical stimulus involved in sensory perception of pain + + + + + The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal. + GOC:ai + + + + + chemical nociception + GOC:pr + + + + + + + + + The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). + Wikipedia:Touch + perception of touch + tactile sense + taction + tactition + biological_process + GO:0050975 + sensory perception of touch + + + + + The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). + GOC:ai + + + + @@ -166023,6 +166555,41 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. + biological_process + GO:0051930 + regulation of sensory perception of pain + + + + + Any process that modulates the frequency, rate or extent of the sensory perception of pain, the series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. + GOC:ai + + + + @@ -183463,6 +184030,43 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal. + dph + 2019-09-13T13:48:47Z + biological_process + GO:0062149 + detection of stimulus involved in sensory perception of pain + + + + + The series of events involved in the perception of pain in which a stimulus is received and converted into a molecular signal. + PMID:19837031 + + + + @@ -194516,6 +195120,30 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs. + https://github.com/geneontology/go-ontology/issues/22368 + pr + 2012-03-05T02:03:58Z + biological_process + GO:0097254 + renal tubular secretion + + + + + The elimination of substances from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine. Substances that are secreted include organic anions, ammonia, potassium and drugs. + GOC:rph + PMID:25287933 + Wikipedia:Renal_secretion#Secretion + + + + @@ -215795,7 +216423,7 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - GO_REF:0000090 + GO_REF:0000090 @@ -240557,6 +241185,282 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. + sl + 2015-03-18T20:33:57Z + down regulation of nociception + down regulation of sensory perception of pain + down-regulation of nociception + down-regulation of sensory perception of pain + downregulation of nociception + downregulation of sensory perception of pain + negative regulation of nociception + down regulation of perception of physiological pain + down-regulation of perception of physiological pain + downregulation of perception of physiological pain + inhibition of nociception + inhibition of perception of physiological pain + inhibition of sensory perception of pain + negative regulation of perception of physiological pain + biological_process + GO:1904057 + negative regulation of sensory perception of pain + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. + GOC:TermGenie + GO_REF:0000058 + PMID:17167094 + + + + + down regulation of nociception + GOC:TermGenie + + + + + down regulation of sensory perception of pain + GOC:TermGenie + + + + + down-regulation of nociception + GOC:TermGenie + + + + + down-regulation of sensory perception of pain + GOC:TermGenie + + + + + downregulation of nociception + GOC:TermGenie + + + + + downregulation of sensory perception of pain + GOC:TermGenie + + + + + negative regulation of nociception + GOC:TermGenie + + + + + down regulation of perception of physiological pain + GOC:TermGenie + + + + + down-regulation of perception of physiological pain + GOC:TermGenie + + + + + downregulation of perception of physiological pain + GOC:TermGenie + + + + + inhibition of nociception + GOC:TermGenie + + + + + inhibition of perception of physiological pain + GOC:TermGenie + + + + + inhibition of sensory perception of pain + GOC:TermGenie + + + + + negative regulation of perception of physiological pain + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of sensory perception of pain. + sl + 2015-03-18T20:34:03Z + positive regulation of nociception + up regulation of nociception + up regulation of sensory perception of pain + up-regulation of nociception + up-regulation of sensory perception of pain + upregulation of nociception + upregulation of sensory perception of pain + activation of nociception + activation of perception of physiological pain + activation of sensory perception of pain + positive regulation of perception of physiological pain + up regulation of perception of physiological pain + up-regulation of perception of physiological pain + upregulation of perception of physiological pain + biological_process + GO:1904058 + positive regulation of sensory perception of pain + + + + + Any process that activates or increases the frequency, rate or extent of sensory perception of pain. + GOC:TermGenie + GO_REF:0000058 + PMID:17167094 + + + + + positive regulation of nociception + GOC:TermGenie + + + + + up regulation of nociception + GOC:TermGenie + + + + + up regulation of sensory perception of pain + GOC:TermGenie + + + + + up-regulation of nociception + GOC:TermGenie + + + + + up-regulation of sensory perception of pain + GOC:TermGenie + + + + + upregulation of nociception + GOC:TermGenie + + + + + upregulation of sensory perception of pain + GOC:TermGenie + + + + + activation of nociception + GOC:TermGenie + + + + + activation of perception of physiological pain + GOC:TermGenie + + + + + activation of sensory perception of pain + GOC:TermGenie + + + + + positive regulation of perception of physiological pain + GOC:TermGenie + + + + + up regulation of perception of physiological pain + GOC:TermGenie + + + + + up-regulation of perception of physiological pain + GOC:TermGenie + + + + + upregulation of perception of physiological pain + GOC:TermGenie + + + + @@ -277742,6 +278646,54 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + gamophytes + ncbi_taxonomy + Conjugatophyceae + Gamophyceae + Gamophyta + Zygnematophyceae + NCBITaxon:131209 + Zygnemophyceae + + + + + gamophytes + + + + + + Conjugatophyceae + + + + + + Gamophyceae + + + + + + Gamophyta + + + + + + Zygnematophyceae + + + + + @@ -277901,6 +278853,19 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:1445966 + Gnetidae + + + + @@ -278300,6 +279265,19 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:2684882 + Zygnematophycidae + + + + @@ -278426,7 +279404,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:3176 + Zygnematales + @@ -278860,6 +279845,33 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual + + + + + + GC_ID:1 + ncbi_taxonomy + Chlamydospermopsida + Gneticae + NCBITaxon:3372 + Gnetopsida + + + + + Chlamydospermopsida + + + + + + Gneticae + + + + + @@ -278877,7 +279889,14 @@ OBSOLETE. PATO divides qualities between normal (monadic, singly-occurring) qual - + + + + GC_ID:1 + ncbi_taxonomy + NCBITaxon:3378 + Gnetales + @@ -333168,7 +334187,7 @@ height'). A cell morphology that inheres in neurons that have dendritic processes radiating from the cell body forming a star-like shape. - ISBN:9780123973481 + ISBN:9780123973481 @@ -336782,7 +337801,35 @@ Classes for population already exist in IDO ('organism population', I - + + + An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof. + insulin + INS + protein + PR:000009054 + Category=gene. + insulin gene translation product + + + + + An insulin family protein that is a translation product of the human INS gene or a 1:1 ortholog thereof. + PRO:DNx + + + + + insulin + PRO:DAN + + + + + INS + PRO:DNx + + @@ -337400,6 +338447,34 @@ Classes for population already exist in IDO ('organism population', I + + + + + + A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide. + fam:INS + protein + PR:000045358 + Category=family. + insulin family protein + + + + + A protein that is a translation product of a gene that encodes a standalone Insulin (Pfam:PF00049) domain preceded by a signal peptide. + PRO:DAN + + + + + fam:INS + PRO:DAN + + + + + @@ -343401,7 +344476,7 @@ Classes for population already exist in IDO ('organism population', I The part of the pancreas that is part of the endocrine system and is made up of islet cells, which produce insulin, glucagon and somatostatin. - GO:GO + GO:GO http://orcid.org/0000-0002-6601-2165 @@ -346802,12 +347877,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -355725,7 +356794,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -355738,6 +356806,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity. Anatomical system containing glands which regulates bodily functions though the secretion of hormones.[AAO] Multicellular organisms have complex endocrine systems, allowing responses to environmental stimuli, regulation of development, reproduction, and homeostasis. Nuclear receptors (NRs), a metazoan-specific family of ligand-activated transcription factors, play central roles in endocrine responses, as intermediates between signaling molecules and target genes. The NR family includes ligand-bound and orphan receptors, that is, receptors with no known ligand or for which there is no ligand Pocket. Understanding NR evolution has been further improved by comparison of several completed genomes, particularly those of deuterostomes and ecdysozoans. In contrast, evolution of NR ligands is still much debated. One hypothesis proposes that several independent gains and losses of ligand-binding ability in NRs occurred in protostomes and deuterostomes. A second hypothesis, pertaining to the NR3 subfamily (vertebrate steroid hormone receptors and estrogen related receptor), proposes that before the divergence of protostomes and deuterostomes, there was an ancestral steroid receptor (AncSR) that was ligand-activated and that orphan receptors secondarily lost the ability to bind a ligand. (...) Our analysis reveals that steroidogenesis has been independently elaborated in the 3 main bilaterian lineages (...).[well established][VHOG] @@ -357629,7 +358698,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -357642,11 +358710,13 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that has as its parts the organs concerned with reproduction. consider splitting genitalia from reproductive system Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO] Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG] + 2022-06-10T18:22:34Z AAO:0010258 BILA:0000103 BTO:0000081 @@ -357673,12 +358743,12 @@ Classes for population already exist in IDO ('organism population', I Wikipedia:Reproductive_system XAO:0000142 ZFA:0000632 + genital system + genitalia uberon Geschlechtsorgan animal reproductive system - genital system genital tract - genitalia organa genitalia reproductive tissue reproductive tract @@ -357725,21 +358795,21 @@ Classes for population already exist in IDO ('organism population', I - - Geschlechtsorgan - BTO:0000081 + + genitalia + - animal reproductive system + Geschlechtsorgan BTO:0000081 - genitalia - + animal reproductive system + BTO:0000081 @@ -358598,7 +359668,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -358611,6 +359680,7 @@ Classes for population already exist in IDO ('organism population', I + Functional system which consists of structures involved in respiration. @@ -358794,7 +359864,6 @@ Classes for population already exist in IDO ('organism population', I - @@ -358807,6 +359876,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO] digestive @@ -358877,15 +359947,15 @@ Classes for population already exist in IDO ('organism population', I - + - + - + @@ -358895,7 +359965,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -358904,19 +359974,7 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - - - The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.. + The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here @@ -358924,6 +359982,7 @@ Classes for population already exist in IDO ('organism population', I Evolution of vertebrate renal anatomy appears quite conservative when compared, for example, to evolution of respiratory and cardiovascular systems in vertebrates. Major anatomical changes in vertebrates kidneys separate those of birds and mammals from kidneys of lower vertebrates. General increase in animal size from fish to mammals is reflected by an increase in total number of nephrons per kidney, rather than by constant change in tubular dimensions.[well established][VHOG] In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels This definition is inclusive of the organs of the vertebrate renal system, as well as the Malpighian tubules of insects, and allows for future incorporation of structures such as the antennal glands of crustaceans + excretory system AAO:0010257 BILA:0000015 BTO:0001244 @@ -358952,8 +360011,6 @@ Classes for population already exist in IDO ('organism population', I XAO:0000143 ZFA:0000163 galen:UrinaryTract - excretory system - renal system systema urinaria systema urinarium urinary system @@ -358971,7 +360028,7 @@ Classes for population already exist in IDO ('organism population', I - The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.. + The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. DOI:10.1371/journal.pone.0099864 GO:0072001 @@ -359024,12 +360081,6 @@ Classes for population already exist in IDO ('organism population', I UMLS:C1508753 ncithesaurus:Urinary_System - - - - renal system - GO:0001977 - @@ -359084,6 +360135,7 @@ Classes for population already exist in IDO ('organism population', I + Organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]. the cardiovascular system and the lymphatic system are parts of the circulatory system @@ -359451,6 +360503,7 @@ Classes for population already exist in IDO ('organism population', I + The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]. A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO] @@ -360171,6 +361224,7 @@ Classes for population already exist in IDO ('organism population', I + The sensory system for the sense of taste. The sensory system for the sense of taste[NLXANAT:090803]. The sensory system used for the sense of taste.[AAO] @@ -368829,7 +369883,7 @@ Classes for population already exist in IDO ('organism population', I - An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO] In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] @@ -368909,7 +369963,7 @@ Classes for population already exist in IDO ('organism population', I - An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. GO:0031016 @@ -370939,6 +371993,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system. Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO] @@ -373752,6 +374807,12 @@ Classes for population already exist in IDO ('organism population', I + + + + + + The subclavian artery that supplies the left pectoral appendage. in humans, branches off the arch of aorta @@ -387809,6 +388870,7 @@ Classes for population already exist in IDO ('organism population', I + @@ -391425,12 +392487,11 @@ Classes for population already exist in IDO ('organism population', I - + The sensory system subserving the sense of vision. - The sensory system used for sight.[AAO] UBERON:0007036 AAO:0000632 @@ -391490,6 +392551,12 @@ Classes for population already exist in IDO ('organism population', I + + + + + + Sensory system responsible for the perception of spatial orientation and auditory stimuli. The sensory system used for balance and hearing.[AAO] AAO:0000631 @@ -392025,7 +393092,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -392077,8 +393144,8 @@ Classes for population already exist in IDO ('organism population', I XAO:0000135 ZFA:0000208 galen:Gallbladder + cholecyst gall bladder - gallbladder uberon vesica biliaris vesica fellea @@ -392089,7 +393156,7 @@ Classes for population already exist in IDO ('organism population', I Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) - gall bladder + gallbladder https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg @@ -392099,19 +393166,6 @@ Classes for population already exist in IDO ('organism population', I BTO - - - - - - - - - - MA - ZFA - cjm - @@ -392194,8 +393248,8 @@ Classes for population already exist in IDO ('organism population', I - gallbladder - FMA:7202 + cholecyst + WikipediaVersioned:Gallbladder&oldid=1092217922 @@ -394587,6 +395641,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the muscular and skeletal systems. Anatomical system that provides locomotion and physical support to the organism.[AAO] There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG] @@ -395737,6 +396792,7 @@ Classes for population already exist in IDO ('organism population', I + Organ system subdivision that consists of the organs and ducts that are involved in the production and transportation of bile. In most species this is the gallbladder and the bile ducts (biliary tree). FMA:79646 @@ -396804,7 +397860,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -396897,6 +397953,12 @@ Classes for population already exist in IDO ('organism population', I notochord http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png + + + + + PMID:15890825 + @@ -397235,6 +398297,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]. CALOHA:TS-2057 EHDAA2:0002225 @@ -400485,6 +401548,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that is involved in the production of hematopoietic cells. Anatomical system that consists of the blood and blood forming tissues.[AAO] Zebrafish developmental hematopoiesis shows close correspondence to the development of the mammalian hematopoietic system and is regulated by conserved molecular pathways.[well established][VHOG] @@ -401143,6 +402207,7 @@ Classes for population already exist in IDO ('organism population', I + Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies. The antibody-based immune system defined by the presence of the major histocompatibility complex (MHC), T cell receptor (TCR), B cell receptor (BCR) or recombination activating genes (RAGs) is known beginning from jawed fishes.[well established][VHOG] @@ -401748,6 +402813,7 @@ Classes for population already exist in IDO ('organism population', I + Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle. (...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG] UBERON:0007029 @@ -402193,6 +403259,7 @@ Classes for population already exist in IDO ('organism population', I + The part of the digestive system that contains the liver and the biliary system. System responsible for the production and movement of bile[ZFIN:curator]. The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [GO:0061008] @@ -410373,7 +411440,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -410383,7 +411450,7 @@ Classes for population already exist in IDO ('organism population', I - + @@ -428432,28 +429499,17 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - - - + + - - + + The sensory system for the sense of touch and pain. @@ -428465,12 +429521,11 @@ Classes for population already exist in IDO ('organism population', I Wikipedia:Somatosensory_system neuronames:2887 somatic sensory system - somatosensory system system for detection of somatic senses uberon UBERON:0003942 - somatic sensory system + somatosensory system @@ -428496,12 +429551,6 @@ Classes for population already exist in IDO ('organism population', I EMAPA:37954 MA:th - - - - somatosensory system - NLXANAT:090818 - @@ -431464,12 +432513,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - The external genitalia are the outer sex organs, such as the penis or vulva in mammals. FMA:45643 SCTID:362207005 @@ -433286,10 +434329,10 @@ Classes for population already exist in IDO ('organism population', I UMLS:C1708179 gall bladder involuntary muscle gall bladder non-striated muscle + gall bladder smooth muscle gall bladder smooth muscle tissue gallbladder involuntary muscle gallbladder non-striated muscle - gallbladder smooth muscle gallbladder smooth muscle tissue involuntary muscle of gall bladder involuntary muscle of gallbladder @@ -433302,7 +434345,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary smooth muscle UBERON:0004240 - gall bladder smooth muscle + gallbladder smooth muscle @@ -433331,31 +434374,25 @@ Classes for population already exist in IDO ('organism population', I - gall bladder smooth muscle tissue - OBOL:automatic - - - - - gallbladder involuntary muscle + gall bladder smooth muscle OBOL:automatic - gallbladder non-striated muscle + gall bladder smooth muscle tissue OBOL:automatic - gallbladder smooth muscle + gallbladder involuntary muscle OBOL:automatic - gallbladder smooth muscle tissue + gallbladder non-striated muscle OBOL:automatic @@ -436393,6 +437430,7 @@ Classes for population already exist in IDO ('organism population', I + Sum of all sensory systems in an organism. note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs FMA:78499 @@ -441400,8 +442438,8 @@ Classes for population already exist in IDO ('organism population', I MA:0001633 NCIT:C49228 UMLS:C1708175 + gall bladder lamina propria gall bladder lamina propria mucosa - gallbladder lamina propria gallbladder lamina propria mucosa lamina propria mucosa of gall bladder lamina propria mucosa of gallbladder @@ -441410,7 +442448,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary lamina propria UBERON:0004781 - gall bladder lamina propria + gallbladder lamina propria @@ -441439,19 +442477,13 @@ Classes for population already exist in IDO ('organism population', I - gall bladder lamina propria mucosa + gall bladder lamina propria OBOL:automatic - gallbladder lamina propria - OBOL:automatic - - - - - gallbladder lamina propria mucosa + gall bladder lamina propria mucosa OBOL:automatic @@ -441605,8 +442637,8 @@ Classes for population already exist in IDO ('organism population', I FMA:14659 MA:0001634 SCTID:362197006 + gall bladder serosa gall bladder serous membrane - gallbladder serosa gallbladder serous membrane serosa of gall bladder serosa of gallbladder @@ -441618,7 +442650,7 @@ Classes for population already exist in IDO ('organism population', I uberon biliary serosa UBERON:0004783 - gall bladder serosa + gallbladder serosa @@ -441629,13 +442661,7 @@ Classes for population already exist in IDO ('organism population', I - gall bladder serous membrane - OBOL:automatic - - - - - gallbladder serosa + gall bladder serosa OBOL:automatic @@ -458545,7 +459571,7 @@ Classes for population already exist in IDO ('organism population', I body hair or bristle - GO:GO + GO:GO @@ -459497,12 +460523,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -459526,22 +460546,12 @@ Classes for population already exist in IDO ('organism population', I EHDAA:3047 EMAPA:16713 XAO:0004205 + gall bladder primordium uberon UBERON:0006242 - gall bladder primordium + gallbladder primordium - - - - - - - - - - cjm - @@ -504531,40 +505541,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - - - - - - Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - genitalia - reproductive system - uberon - UBERON:3011048 - genital system - - - - - Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - XAO:0000142 - https://www.merriam-webster.com/dictionary/genitalia - - - - - This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - http://purl.obolibrary.org/obo/aao.owl - - - - @@ -505758,6 +506734,43 @@ Classes for population already exist in IDO ('organism population', I + + + + + + + + + + + + + + + + + + + + + + An anatomical system that eliminates waste products that arise as a result of metabolic activity. + http://orcid.org/0000-0002-6095-8718 + 2022-05-25T18:21:29Z + uberon + UBERON:8450002 + excretory system + + + + + An anatomical system that eliminates waste products that arise as a result of metabolic activity. + GO:0007588 + + + + @@ -506233,6 +507246,21 @@ Classes for population already exist in IDO ('organism population', I + + + + + + + + + + + + + + + @@ -506566,6 +507594,36 @@ Classes for population already exist in IDO ('organism population', I only in species that have a stomach + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +