From a1b7631d4d1e67dd07722509a5a929d417394e74 Mon Sep 17 00:00:00 2001 From: Ray Stefancsik Date: Wed, 28 Feb 2024 15:29:13 +0000 Subject: [PATCH 1/2] Make ratio the primary label of * PATO:0001470 ratio and child terms * PATO:0040043 increased ratio * PATO:0040042 decreased ratio Also, improve the logical definitions of 'increased ratio' and 'decreased' by using EQs. Resolve #555 --- src/ontology/pato-edit.obo | 28 +++++++++++++++------------- 1 file changed, 15 insertions(+), 13 deletions(-) diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index c1d5316..b45f7de 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -9498,16 +9498,16 @@ is_a: PATO:0000406 ! curved [Term] id: PATO:0001470 -name: proportionality to -def: "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." [PATOC:nw] -comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. +name: ratio +def: "A quality inhering in a bearer by virtue of the bearer's magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140"} +comment: Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio. {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140"} subset: attribute_slim subset: relational_slim synonym: "proportion" EXACT [] synonym: "proportionality" EXACT [] +synonym: "proportionality to" EXACT [] synonym: "quotient" EXACT [] synonym: "rate" RELATED [] -synonym: "ratio" EXACT [] is_a: PATO:0001018 ! physical quality [Term] @@ -20661,28 +20661,30 @@ property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001 [Term] id: PATO:0040042 -name: decreased proportionality to -def: "A proportionality quality inhering in a bearer by virtue of the bearer's decreased magnitude in respect to a related entity." [https://orcid.org/0000-0001-5208-3432] +name: decreased ratio +def: "A decreased quality inhering in a bearer by virtue of the bearer's decreased magnitude in proportion to the magnitude of anoter entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"} comment: Example: decreased proportion of CD4 T cells relative to total T cells. subset: relational_slim synonym: "decreased proportion" EXACT [] synonym: "decreased proportionality" EXACT [] +synonym: "decreased proportionality to" EXACT [] synonym: "decreased quotient" EXACT [] -synonym: "decreased ratio" EXACT [] -is_a: PATO:0001470 ! proportionality to +intersection_of: PATO:0001470 ! ratio +intersection_of: PATO:0002301 ! decreased quality property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040043 -name: increased proportionality to -def: "A proportionality quality inhering in a bearer by virtue of the bearer's increased magnitude in respect to a related entity." [https://orcid.org/0000-0001-5208-3432] +name: increased ratio +def: "An increased quality inhering in a bearer by virtue of the bearer's increased magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"} comment: Example: increased proportion of CD4 T cells relative to total T cells. subset: relational_slim synonym: "increased proportion" EXACT [] synonym: "increased proportionality" EXACT [] +synonym: "increased proportionality to" EXACT [] synonym: "increased quotient" EXACT [] -synonym: "increased ratio" EXACT [] -is_a: PATO:0001470 ! proportionality to +intersection_of: PATO:0001470 ! ratio +intersection_of: PATO:0002300 ! increased quality property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5208-3432 [Term] @@ -22509,7 +22511,7 @@ creation_date: 2020-10-30T08:08:48Z id: PATO:0095001 name: organismal area to mass ratio def: "Quotient (or ratio) of surface area of an organism divided by the mass of the same organism" [] -is_a: PATO:0001470 ! proportionality to +is_a: PATO:0001470 ! ratio is_a: PATO:0001995 ! organismal quality property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-2908-3327 property_value: http://purl.org/dc/elements/1.1/date "2021-05-17T13:13:52Z" xsd:dateTime From ad4c591556a5a86f4b1afa15bc9dcb023460866a Mon Sep 17 00:00:00 2001 From: Ray Stefancsik Date: Fri, 8 Mar 2024 13:22:03 +0000 Subject: [PATCH 2/2] Fix typo in src/ontology/pato-edit.obo Co-authored-by: Jim Balhoff --- src/ontology/pato-edit.obo | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index b45f7de..ecf2d58 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -20662,7 +20662,7 @@ property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001 [Term] id: PATO:0040042 name: decreased ratio -def: "A decreased quality inhering in a bearer by virtue of the bearer's decreased magnitude in proportion to the magnitude of anoter entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"} +def: "A decreased quality inhering in a bearer by virtue of the bearer's decreased magnitude in proportion to the magnitude of another entity." [] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-8314-2140", http://purl.org/dc/terms/contributor="https://orcid.org/0000-0001-5208-3432"} comment: Example: decreased proportion of CD4 T cells relative to total T cells. subset: relational_slim synonym: "decreased proportion" EXACT []