Version: 1.0.0
Authors: Andrew Quach and Tamir Enkhjargal
The repository contains a quick java implementation of aligning nucleotide sequences utilizing the Needleman-Wunsh algorithm. This was done as a project for Computer Science A as an example of dynamic programming.
Change the scoring system by changing the final variables.
public static final int MATCH = x;
public static final int MISMATCH = x;
public static final int INDEL = x;
Call the alignStrands method in main.
alignStrands("GATTACA", "GCATGCU");
Compile and run the java file.
javac NeedlemanWunsch.java
java NeedlemanWunsch
This java implementation is released under the MIT License.