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    42 repositories

    • snps

      Public
      tools for reading, writing, merging, and remapping SNPs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•2•0•4•Updated Nov 4, 2024Nov 4, 2024

    • gwas2vcf

      Public
      Convert GWAS summary statistics to VCF. Forked project
      Python
      •
      MIT License
      •18•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • gtc-to-vcf

      Public
      Script to convert GTC/BPM files to VCF
      Python
      •
      Apache License 2.0
      •31•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • SumStatsRehab

      Public
      GWAS summary statistics files QC tool
      Python
      •
      MIT License
      •6•0•0•1•Updated May 21, 2024May 21, 2024

    • django-oidc-provider

      Public
      OpenID Connect and OAuth2 provider implementation for Djangonauts.
      Python
      •
      MIT License
      •239•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • rd-imputation-accuracy

      Public
      Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
      geneticseagleimputationaccuracygenotypephasingimputation-accuracybeagleimputeminimac
      Python
      •
      MIT License
      •4•22•0•0•Updated Feb 29, 2024Feb 29, 2024

    • rd-eztraits

      Public
      Calculating trait score
      C++
      •
      MIT License
      •1•19•0•0•Updated Feb 29, 2024Feb 29, 2024

    • mozilla-django-oidc

      Public
      A django OpenID Connect library
      Python
      •
      Mozilla Public License 2.0
      •169•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • PUMAS

      Public
      Fine-tuning polygenic risk score models using GWAS summary statistics. Forked project
      R
      •
      MIT License
      •11•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • ssosync_old

      Public archive
      Populate AWS SSO directly with your G Suite users and groups using either a CLI or AWS Lambda
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 6, 2023Feb 6, 2023

    • htslib

      Public archive
      C library for high-throughput sequencing data formats
      C
      •
      Other
      •446•0•0•0•Updated Jan 7, 2021Jan 7, 2021

    • devtools

      Public archive
      Tools to make an R developer's life easier
      R
      •756•0•0•0•Updated Dec 21, 2020Dec 21, 2020

    • bcftools

      Public archive
      This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
      C
      •
      Other
      •240•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • python-stream

      Public archive
      Python
      •2•0•0•0•Updated Sep 17, 2020Sep 17, 2020

    • mozilla-django-oidc-detached

      Public archive
      A django OpenID Connect library
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • pyrestest

      Public archive
      Unit test a REST API with pytest.
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • logmanager

      Public archive
      Manage logging related operations
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • vgraph

      Public archive
      vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.
      Python
      •
      Apache License 2.0
      •10•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • django-generic-m2m

      Public archive
      relate anything to anything
      Python
      •
      MIT License
      •29•0•0•0•Updated Dec 9, 2019Dec 9, 2019

    • django-precise-bbcode

      Public archive
      A Django application for parsing, displaying and editing BBCodes-based text contents.
      Python
      •
      Other
      •10•0•0•0•Updated Oct 4, 2019Oct 4, 2019

    • rsid-overlap

      Public archive
      HTML
      •1•0•0•0•Updated Sep 30, 2019Sep 30, 2019

    • wp-postratings

      Public archive
      Adds an AJAX rating system for your WordPress blog's post/page.
      PHP
      •82•0•0•0•Updated Sep 17, 2019Sep 17, 2019

    • stealth-publish

      Public archive
      WordPress.org Plugin Mirror
      PHP
      •
      GNU General Public License v2.0
      •2•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • table-of-contents-plus

      Public archive
      A powerful yet user friendly WordPress plugin that automatically creates a table of contents. Can also output a sitemap listing all pages and categories.
      PHP
      •
      GNU General Public License v2.0
      •27•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • drf-tree-routers

      Public archive
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 19, 2019Jul 19, 2019

    • django-crossdb-foreignkey

      Public archive
      Python
      •
      MIT License
      •1•1•0•0•Updated Jul 12, 2019Jul 12, 2019

    • django-composite-pk

      Public archive
      Composite Primary Key for Django
      Python
      •
      MIT License
      •2•0•0•0•Updated Jul 4, 2019Jul 4, 2019

    • django-outer-join

      Public archive
      Outer Join for Django
      Python
      •2•0•0•0•Updated Jul 4, 2019Jul 4, 2019

    • django-model-wrappers

      Public archive
      Python
      •
      MIT License
      •2•0•0•0•Updated Jul 3, 2019Jul 3, 2019

    • python-jose-cryptodome

      Public archive
      A JOSE implementation in Python (pycrypto replaced by pycryptodome).
      Python
      •
      MIT License
      •17•0•0•0•Updated May 31, 2019May 31, 2019