Repositories list

• slicer-manual-annotation

  Public
  Python

  •

  MIT License

  •1•4•37•2•Updated Nov 30, 2024Nov 30, 2024

• totalspineseg

  Public
  Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

  mrisegmentationspine+ 8spinal-cordsegmentation-modelsnnu-net3d-medical-imagesvertebraevertebrae-segmentationvertebrae-identification+ 1

  Python

  •

  GNU Lesser General Public License v3.0

  •1•20•12•2•Updated Nov 29, 2024Nov 29, 2024

• coil-qa

  Public
  Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

  Python

  •

  MIT License

  •0•0•4•0•Updated Nov 28, 2024Nov 28, 2024

• intranet.neuro.polymtl.ca

  Public
  NeuroPoly's lab manual

  websitedocumentationdeep-learning+ 5wikihardwareneuroscienceaccountssphinx-doc

  HTML

  •7•4•46•11•Updated Nov 26, 2024Nov 26, 2024

• neuro.polymtl.ca

  Public
  NeuroPoly's Website

  websitedocumentationsphinx+ 1neuroscience

  Python

  •7•3•27•3•Updated Nov 23, 2024Nov 23, 2024

• cortical-surface64mT

  Public
  Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• segmentation-tools-awesome-list

  Public
  This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classification workflows.

  MIT License

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• Susceptibility-Separation-Phantom

  Public
  This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

  MATLAB

  •

  MIT License

  •1•5•3•0•Updated Nov 12, 2024Nov 12, 2024

• bibeasy

  Public
  Set of tools to manage academic bibliography

  Python

  •

  Apache License 2.0

  •0•2•13•0•Updated Oct 29, 2024Oct 29, 2024

• template

  Public
  A framework for creating unbiased MRI templates of the spinal cord

  Python

  •

  MIT License

  •4•5•17•0•Updated Oct 22, 2024Oct 22, 2024

• synthetic-neonatal

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• phantom-spinoza

  Public
  CAD model and recipe for MRI head-torso phantom fabrication

  MIT License

  •1•2•4•0•Updated Sep 23, 2024Sep 23, 2024

• changelog

  Public
  Create a changelog file from all the merged pull requests

  Python

  •

  MIT License

  •2•1•5•3•Updated Aug 22, 2024Aug 22, 2024

• single_voxel_mrs_b0_shimming

  Public
  This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• pediatric-DL-registration

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

• pediatric-intra-inter-encoding

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• paradim-segmentation-brain

  Public
  Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM

  Python

  •

  MIT License

  •0•2•4•0•Updated Feb 24, 2024Feb 24, 2024

• gitea

  Public
  https://gitea.io fork with https://git-annex.branchable.com support

  Go

  •

  MIT License

  •5.5k•3•22•9•Updated Nov 29, 2023Nov 29, 2023

• coda

  Public archive
  Deployment and testing repository for https://www.coda-platform.com/

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

• coil-spine7t

  Public
  Material for the 8Tx/20Rx 7T c-spine coil

  MIT License

  •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

• idea-projects

  Public
  Ideas for cool projects

  0•1•22•0•Updated May 17, 2023May 17, 2023

• bids-hook

  Public
  Tiny CI server to run bids-validator using Gitea webhooks

  Go

  •

  GNU Affero General Public License v3.0

  •0•0•5•2•Updated May 8, 2023May 8, 2023

• ansible

  Public
  Ansible roles published to https://galaxy.ansible.com/

  MIT License

  •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

• data-management

  Public
  Repo that deals with datalad aspects for internal use

  Python

  •0•4•122•2•Updated Feb 28, 2023Feb 28, 2023

• realtime-dynamic-shimming

  Public
  batch processing for realtime dynamic shimming of MGRE cervical spinal cord images

  Jupyter Notebook

  •0•0•4•0•Updated Dec 6, 2022Dec 6, 2022

• tract-clustering

  Public
  Data-driven approach for tracts in rat histology

  clusteringratatlas

  Jupyter Notebook

  •0•0•2•1•Updated Nov 15, 2022Nov 15, 2022

• lesion-mapping

  Public
  Set of tools for mapping lesions in the brain and/or spinal cord

  Python

  •1•5•5•1•Updated Nov 11, 2022Nov 11, 2022

• github-app-token

  Public
  Impersonate a GitHub App in a GitHub Action

  TypeScript

  •

  MIT License

  •143•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• data-multi-subject-test

  Public
  Multi-subject data for the Spine Generic project

  Python

  •

  Creative Commons Attribution 4.0 International

  •15•0•0•0•Updated Aug 24, 2022Aug 24, 2022

• bids-validator

  Public
  Validator for the Brain Imaging Data Structure

  JavaScript

  •

  MIT License

  •111•0•0•0•Updated Jul 19, 2022Jul 19, 2022