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    60 repositories

    • rdkit

      Public
      The official sources for the RDKit library
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •881•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • PymolToNanome

      Public
      Pymol script to send the current view to Nanome 2
      visualizationdrug-discoverydrug-design
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • nanome-docs

      Public
      Documentation for Nanome (https://docs.nanome.ai)
      2•0•0•2•Updated Nov 4, 2024Nov 4, 2024

    • mara-tool-protein-processing

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • mara-tool-ligand-extraction

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • mara-tool-docking

      Public
      Groovy
      •
      MIT License
      •0•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • mara-tools-cdd-vault

      Public
      Tools for posting and requesting data to and from CDD Vault
      1•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mara-tool-pca-cluster

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mara-tool-multiple-seq-align

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mara-tool-MMP

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mara-tool-MD

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • DiffLinker

      Public
      DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design
      Python
      •
      MIT License
      •44•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • plugin-chemical-interactions

      Public
      Generate visual chemical interactions using open-source (Arpeggio) or your own web-service
      Python
      •
      Other
      •2•2•1•0•Updated Mar 18, 2024Mar 18, 2024

    • plugin-vault

      Public
      A plugin to upload files via web interface to make them available in Nanome
      Python
      •
      MIT License
      •0•0•0•7•Updated Feb 28, 2024Feb 28, 2024

    • nanome-plugin-deployer

      Public
      An easily deployable Starter Pack of Nanome Plugins
      Shell
      •1•3•0•0•Updated Feb 28, 2024Feb 28, 2024

    • plugin-cookbook

      Public
      Chef Mike's Nanome Plugin Cookbook
      pythondocumentationpluginscompchemnanome
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Feb 16, 2024Feb 16, 2024

    • plugin-cryoem

      Public
      Nanome plugin to load Cryo-EM files and display them as surfaces
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • plugin-esp

      Public
      Calculate ElectroStatic Potential Maps using APBS
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • helm-charts

      Public
      Scripts that can be used to deploy a starter stack to a kubernetes cluster
      Smarty
      •
      MIT License
      •0•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • nanome-cdn

      Public
      0•1•0•1•Updated Dec 22, 2023Dec 22, 2023

    • plugin-data-table

      Public
      A Nanome plugin to view multi-frame structure metadata in a table
      Vue
      •
      MIT License
      •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

    • plugin-antibodies

      Public
      Nanome plugin for working with antibodies
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • plugin-coordinate-align

      Public
      Override the 3D local coordinate space of a complex to be relative to a reference complex
      Shell
      •
      MIT License
      •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • nanome-lib

      Public
      Nanome Lib - Python API for Nanome Plugins
      pythonpluginapichemistryvirtual-realitycomputational-chemistrymedicinal-chemistrycomputationalbiologynanomenanome-plugins
      Python
      •
      MIT License
      •7•9•3•0•Updated Nov 20, 2023Nov 20, 2023

    • plugin-realtime-scoring

      Public
      Real-time Atom Scoring using DSX
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • plugin-superimpose-proteins

      Public
      Overlays two or more proteins in 3D space for visual comparison and calculates Root Mean Square Deviation (RMSD) values as a numeric metric on structural similarity
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 6, 2023Oct 6, 2023

    • plugin-redis-pubsub

      Public
      A Nanome plugin used to send and receive messages with NTS via Redis PubSub
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • plugin-rmsd

      Public
      An RMSD Plugin for Nanome's Drug Discovery Software
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 6, 2023Jul 6, 2023

    • plugin-structure-prep

      Public
      Server-side delegated bond and DSSP calculations for Oculus Quest
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • Pymol-plugin-Nanome-Quickdrop

      Public
      Pymol plugin to send the current session to Nanome via Quickdrop
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 12, 2023Jun 12, 2023