Repositories list

• ngs_scripts

  Public
  R

  •0•0•3•0•Updated Dec 2, 2024Dec 2, 2024

• modelling

  Public
  Website for the infectious disease modelling team at FHI

  HTML

  •

  MIT License

  •2•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• Fhi.Frontend.Demo

  Public
  TypeScript

  •

  MIT License

  •1•2•21•3•Updated Nov 29, 2024Nov 29, 2024

• viralseq

  Public
  Assemble viral genomes from NGS data

  Nextflow

  •

  MIT License

  •0•0•11•0•Updated Nov 28, 2024Nov 28, 2024

• covid19_economic_evaluation

  Public
  R

  •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• Fhi.ReverseProxyMiddleware

  Public
  Handles reverse proxy middleware

  C#

  •

  MIT License

  •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• FHI_SC2_Pipeline_Nanopore

  Public
  Bioinformatic pipeline for SARS-CoV-2 sequence analysis

  R

  •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• Fhi.Frontend.ReactComponents

  Public
  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• Fhi.Slash.Mottak

  Public
  C#

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• Slash

  Public
  Sikker lagring av sensitive helsedata (SLASH)

  C#

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• Fhi.Frontend.Style

  Public
  SCSS

  •2•2•2•0•Updated Oct 16, 2024Oct 16, 2024

• TOP

  Public
  Bacterial swiss-army-knife pipeline for NGS data

  Python

  •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• covid19_trend

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• START

  Public
  Analysis of DNA methylation in ART trios

  HTML

  •1•3•0•0•Updated Aug 13, 2024Aug 13, 2024

• FIDA

  Public
  0•1•0•0•Updated May 27, 2024May 27, 2024

• 2024-facemask-trial-bmj

  Public
  The personal protective effect of wearing surgical face masks in public spaces on self-reported respiratory symptoms in adults: a pragmatic randomised superiority trial

  R

  •0•2•0•0•Updated May 23, 2024May 23, 2024

• AOPnetworkFinder_v1

  Public archive
  Python

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated May 4, 2024May 4, 2024

• KppParser

  Public
  Konverterer KPP-filer til XML meldingen som skal sendes til Helsedirektoratet

  C#

  •2•2•3•2•Updated Apr 25, 2024Apr 25, 2024

• Fhi.Statistikk.OpenAPI

  Public
  C#

  •0•1•0•0•Updated Apr 9, 2024Apr 9, 2024

• hepatitis_C_model

  Public
  Model of hepatitis C transmission in Norway used in Whittaker, Midtbø and Kløvstad (submitted)

  infectious-disease-modelshepatitis-cpwid

  R

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• mpox_surveillance

  Public
  R

  •0•1•0•0•Updated Mar 22, 2024Mar 22, 2024

• FHI_SC2_Pipeline_Illumina

  Public
  Bioinformatic pipeline for SARS-CoV-2 sequence analysis

  R

  •0•1•0•0•Updated Mar 20, 2024Mar 20, 2024

• sc2_seq_analysis

  Public
  R

  •0•0•0•0•Updated Mar 6, 2024Mar 6, 2024

• FIDA-test

  Public
  0•1•0•0•Updated Feb 23, 2024Feb 23, 2024

• SC2_drug_resistance

  Public
  Analysis of Sars-Cov-2 drug resistance mutations from the Stanford database

  R

  •0•0•4•0•Updated Feb 9, 2024Feb 9, 2024

• X-factor-ART

  Public
  Supplementary Materials and code used in the Xchrom publication

  HTML

  •0•0•0•0•Updated Jan 19, 2024Jan 19, 2024

• Fhi.MoBa

  Public
  0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

• respiratory_disease_scenarios_2023

  Public
  Scenarios for covid-19 and influenza for the winter 23/24

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• covid19_seroprevalence

  Public
  Method for calculating seroprevalence using antibodies against two variants of covid-19

  Stan

  •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

• immunological_profiling_severe_influenza

  Public
  R

  •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023