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    19 repositories

    • rpysight

      Public
      Real-time 2D/3D rendering of photon streams from a TimeTagger
      renderingneurosciencemicroscopyphoton-counting
      Rust
      •
      GNU General Public License v3.0
      •2•1•7•1•Updated Jul 8, 2024Jul 8, 2024

    • WideFlow

      Public
      Live analysis of propagating waves in wide field imaging
      Jupyter Notebook
      •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • dm_optimization

      Public
      Optimize laser wavefront using Alpao's DM69
      MATLAB
      •0•1•6•0•Updated May 11, 2022May 11, 2022

    • neural_collision_detection

      Public
      Collide vasculature and neurons for fun and profit (?)
      neuronscollisionsvasculature
      C++
      •0•1•0•0•Updated Oct 23, 2021Oct 23, 2021

    • arrow2

      Public
      Unofficial transmute-free Rust library to work with the Arrow format
      Rust
      •
      Other
      •221•0•0•0•Updated Oct 17, 2021Oct 17, 2021

    • python-pysight

      Public
      Create images and volumes from photon lists generated by a multiscaler
      Python
      •
      Other
      •2•2•8•1•Updated Sep 4, 2021Sep 4, 2021

    • CVM

      Public
      Continuous Volumetric Microscopy
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 15, 2021Aug 15, 2021

    • nalgebra-numpy

      Public
      Convert between nalgebra and numpy types.
      Rust
      •
      BSD 2-Clause "Simplified" License
      •8•0•0•0•Updated Aug 11, 2021Aug 11, 2021

    • dff-calc

      Public
      Calculate dF/F for neural traces, based on https://www.nature.com/articles/nprot.2010.169
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Aug 1, 2021Aug 1, 2021

    • ca-analysis-bloodflow

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•2•0•Updated Jul 15, 2021Jul 15, 2021

    • CHIPS

      Public
      CHIPS, or Cellular and Hemodynamic Image Processing Suite, is an open-source MATLAB toolbox designed to analyse functional images of cells and blood vessels, primarily from two-photon microscopy. Please see the README file, which is displayed at the bottom of this page, for more information.
      MATLAB
      •
      Other
      •4•0•0•0•Updated Apr 27, 2021Apr 27, 2021

    • magicgui

      Public
      build GUIs from python functions, using magic.
      Python
      •
      MIT License
      •49•0•0•0•Updated Apr 19, 2021Apr 19, 2021

    • napari

      Public
      napari: a fast, interactive, multi-dimensional image viewer for python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •423•0•0•0•Updated Apr 3, 2020Apr 3, 2020

    • vispy

      Public
      Main repository for Vispy
      Python
      •
      Other
      •618•0•0•0•Updated Dec 18, 2019Dec 18, 2019

    • napari-tutorials

      Public
      tutorials for the napari image viewer
      BSD 3-Clause "New" or "Revised" License
      •43•0•0•0•Updated Nov 7, 2019Nov 7, 2019

    • behaviour

      Public
      MATLAB
      •0•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • python-gsheet

      Public
      Read and write data from Google Sheets
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 2, 2017Nov 2, 2017

    • EP-analysis

      Public
      Analyze the outputs of the EP algorithm
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 17, 2017Sep 17, 2017

    • Eran-Hagai-Project

      Public
      MATLAB
      •1•0•0•0•Updated Aug 29, 2016Aug 29, 2016