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    23 repositories

    • PopGen-Scripts

      Public
      Random Ancient DNA and PopGen scripts
      Shell
      •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • Davidson_etal_2024-Twist

      Public
      Scripts and data used in the benchmarking study of Twist Ancient Human DNA enrichment by Davidson et al. 2024
      R
      •
      MIT License
      •1•0•0•0•Updated May 20, 2024May 20, 2024

    • eager

      Public
      A fully reproducible and state-of-the-art ancient DNA analysis pipeline
      Nextflow
      •
      MIT License
      •81•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT

      Public
      Scripts and notes on running ADMIXTURE and smartPCA, and working with data in PLINK and EIGENSTRAT
      R
      •8•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • mag-for-phoenix

      Public
      How to run nf-core/mag on University of Adelaide's "Phoenix" HPC
      Mozilla Public License 2.0
      •1•0•0•0•Updated Mar 21, 2024Mar 21, 2024

    • Davidson_etal_2023-Capture-bias-paper

      Public
      Scripts used for analysis and plot generation for the capture bias paper.
      R
      •1•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • Guide-to-manipulating-PLINK-EIG-and-VCF-files

      Public
      A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
      plinkeigenstratvcf
      Shell
      •2•18•0•0•Updated Aug 9, 2023Aug 9, 2023

    • 2022_Adelaide_Code_Club

      Public
      A fortnightly datascience / R training group.
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • Human-group-workflow

      Public
      An overview of everything technical that we do from lab to bioinformatics (discussions from 2022 humans group)
      0•0•0•0•Updated May 6, 2022May 6, 2022

    • XRR-pipeline-for-sequencing-data

      Public
      1•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • PolyLinkR

      Public
      Polygenic Pathway Enrichment Accounting for Genetic Linkage.
      R
      •
      Other
      •1•1•0•0•Updated Aug 30, 2021Aug 30, 2021

    • Robbis-pipeline-to-process-modern-shotgun-data

      Public
      Annotated pipeline for processing modern shotgun data from bcl through to VCF
      Shell
      •0•0•0•0•Updated May 11, 2021May 11, 2021

    • PolyLink

      Public
      Pathway Enrichment Pipeline
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 29, 2020Dec 29, 2020

    • OAGR_Selection_Paper_Helper_Scripts

      Public
      Helper scripts for the "Ancient human genomes reveal a hidden history of strong selection in Eurasia" Paper
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2020Mar 12, 2020

    • tools

      Public
      Various tools to process and analyse sequencing data (from bitbucket grg)
      TeX
      •1•0•0•0•Updated Sep 25, 2019Sep 25, 2019

    • cmd_files

      Public
      Useful command lines
      0•0•0•0•Updated Sep 25, 2019Sep 25, 2019

    • sexassign

      Public
      Genetic sex determination using read dosage
      Python
      •2•0•0•0•Updated May 19, 2019May 19, 2019

    • PP5mC

      Public
      A pre-processing toolkit for 5mC calling from HBS-seq data.
      C
      •2•0•0•0•Updated Jan 10, 2019Jan 10, 2019

    • kernel-test

      Public
      Two-sample multivariate kernel test
      R
      •1•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • rap

      Public
      In-silico digestion of a reference sequence by restriction enzymes
      C
      •2•0•0•0•Updated Mar 20, 2018Mar 20, 2018

    • DemographicCourseAdelaide2018

      Public
      3•0•0•0•Updated Jan 31, 2018Jan 31, 2018

    • Bioinformatics-Wiki

      Public
      ACAD's Bioinformatics Wiki Pages
      MIT License
      •2•5•6•0•Updated Sep 26, 2016Sep 26, 2016

    • bycatch

      Public
      C
      •1•0•0•0•Updated Jun 3, 2015Jun 3, 2015