diff --git a/test_Annotation.py b/test_Annotation.py index 9f220af..b5ea718 100644 --- a/test_Annotation.py +++ b/test_Annotation.py @@ -31,7 +31,7 @@ def test_check_protein_change(): ProteinChangeQuery('BRAF', 'V600E', 'Colorectal Cancer') ] - annotations = pull_protein_change_info(queries) + annotations = pull_protein_change_info(queries, False) assert len(annotations) == 1 annotation = annotations[0] @@ -48,7 +48,7 @@ def test_reference_genome(): GenomicChangeQuery('7', '140753336', '140753336', 'A', 'T', 'LUAD', ReferenceGenome.GRCH38) ] - annotations = pull_protein_change_info(queries) + annotations = pull_protein_change_info(queries, False) assert len(annotations) == 2 annotation37 = annotations[0] @@ -60,7 +60,7 @@ def test_reference_genome(): ProteinChangeQuery('MYD88', 'M219T', 'Ovarian Cancer', ReferenceGenome.GRCH38) ] - annotations = pull_protein_change_info(queries) + annotations = pull_protein_change_info(queries, False) assert len(annotations) == 2 annotation37 = annotations[0] @@ -74,7 +74,7 @@ def test_fake_gene_protein_change(): ProteinChangeQuery('test1', 'V600E', 'Ovarian Cancer') ] - annotations = pull_protein_change_info(queries) + annotations = pull_protein_change_info(queries, False) fake_gene_one_query_suite(annotations) @@ -87,7 +87,7 @@ def test_check_atypical_alts(): ProteinChangeQuery('TERT', 'Promoter Mutation', 'Bladder Cancer', None, '5\'Flank') ] - annotations = pull_protein_change_info(queries) + annotations = pull_protein_change_info(queries, False) assert len(annotations) == 4 annotation = annotations[0] @@ -121,7 +121,7 @@ def test_check_hgvsg(): HGVSgQuery('5:g.1295228G>A', 'LUAD'), ] - annotations = pull_hgvsg_info(queries) + annotations = pull_hgvsg_info(queries, False) assert len(annotations) == 3 annotation = annotations[0] @@ -150,7 +150,7 @@ def test_check_genomic_change(): GenomicChangeQuery('5', '1295228', '1295228', 'G', 'A', 'LUAD'), ] - annotations = pull_genomic_change_info(queries) + annotations = pull_genomic_change_info(queries, False) assert len(annotations) == 3 annotation = annotations[0]