diff --git a/.bumpversion.cfg b/.bumpversion.cfg new file mode 100644 index 0000000..1104e9c --- /dev/null +++ b/.bumpversion.cfg @@ -0,0 +1,21 @@ +[bumpversion] +current_version = 0.1.0-dev +commit = True +tag = True +parse = (?P\d+)\.(?P\d+)\.(?P\d+)-?(?Pdev)? +serialize = + {major}.{minor}.{patch}-{release} + {major}.{minor}.{patch} + +[bumpversion:file:pyproject.toml] + +[bumpversion:file:doc/conf.py] + +[bumpversion:file:README.rst] + +[bumpversion:part:release] +values = + dev + release +optional_value = release + diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..b27fc4d --- /dev/null +++ b/.gitignore @@ -0,0 +1,142 @@ +/.idea +/venv +/.venv + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ diff --git a/README.rst b/README.rst new file mode 100644 index 0000000..a75615d --- /dev/null +++ b/README.rst @@ -0,0 +1,117 @@ +ogdf-python: Automagic Python Bindings for the Open Graph Drawing Framework +=========================================================================== + +`Original repository `_ (GitHub) - +`Bugtracker and issues `_ (GitHub) - +`PyPi package `_ (PyPi ``ogdf-python``) - +`Documentation `_ (Read The Docs). + +`Official OGDF website `_ (ogdf.net) - +`Public OGDF repository `_ (GitHub) - +`Internal OGDF repository `_ (GitLab) - +`OGDF Documentation `_ (GitHub / Doxygen) - +`cppyy Documentation `_ (Read The Docs). + +.. |(TM)| unicode:: U+2122 + +``ogdf-python`` uses the `black magic `_ +of the awesome `cppyy `_ library to automagically generate python bindings +for the C++ Open Graph Drawing Framework (OGDF). +It is available for Python>=3.6 and is Apache2 licensed. +There are no binding definitions files, no stuff that needs extra compiling, it just works\ |(TM)|, believe me. +Templates, namespaces, cross-language callbacks and inheritance, pythonic iterators and generators, it's all there. +If you want to learn more about the magic behind the curtains, read `this article `_. + + +Quickstart +---------- + +First, install the package ``ogdf-python`` package. +Please note that building ``cppyy`` from sources may take a while. +If you didn't install OGDF globally on your system, +either set the ``OGDF_INSTALL_DIR`` to the prefix you configured in ``cmake``, +or set ``OGDF_BUILD_DIR`` to the subdirectory of your copy of the OGDF repo where your +`out-of-source build `_ lives. + +.. code-block:: bash + + $ pip install ogdf-python + $ OGDF_BUILD_DIR=~/ogdf/build-debug python3 + +Alternatively, ``ogdf-python`` works very well with Jupyter: + +.. code-block:: python + + %env OGDF_BUILD_DIR=~/ogdf/build-debug + + from ogdf_python import ogdf, cppinclude + cppinclude("ogdf/basic/graph_generators/randomized.h") + cppinclude("ogdf/layered/SugiyamaLayout.h") + + G = ogdf.Graph() + ogdf.setSeed(1) + ogdf.randomPlanarTriconnectedGraph(G, 20, 40) + GA = ogdf.GraphAttributes(G, ogdf.GraphAttributes.all) + + for n in G.nodes: + GA.label[n] = "N%s" % n.index() + + SL = ogdf.SugiyamaLayout() + SL.call(GA) + GA + +.. image:: docs/examples/sugiyama-simple.svg + :target: docs/examples/sugiyama-simple.ipynb + :alt: SugiyamaLayouted Graph + :height: 300 px + +Read the pitfalls section and check out `docs/examples/pitfalls.ipynb `_ +for the more advanced Sugiyama example from the OGDF docs. +There is also a bigger example in `docs/examples/ogdf-includes.ipynb `_. +If anything is unclear, check out the python help ``help(ogdf.Graph)`` and read the corresponding OGDF documentation. + +.. + Documentation + ------------- + TODO use ``help(ogdf.Graph)`` and sphinx autodoc + +.. + Load Custom Code + ---------------- + TODO + +Pitfalls +-------- + +See also `docs/examples/pitfalls.ipynb `_ for full examples. + +OGDF sometimes takes ownership of objects (usually when they are passed as modules), +which may conflict with the automatic cppyy garbage collection. +Set ``__python_owns__ = False`` on those objects to tell cppyy that those objects +don't need to be garbage collected, but will be cleaned up from the C++ side. + +.. code-block:: python + + SL = ogdf.SugiyamaLayout() + ohl = ogdf.OptimalHierarchyLayout() + ohl.__python_owns__ = False + SL.setLayout(ohl) + +When you overwrite a python variable pointing to a C++ object (and it is the only +python variable pointing to that object), the C++ will usually be immediately deleted. +This might be a problem if another C++ objects depends ob that old object, e.g. +a ``GraphAttributes`` instance depending on a ``Graph`` instance. +Now the other C++ object has a pointer to a delted and now invalid location, +which will usually cause issues down the road (e.g. when the dependant object is +deleted and wants to deregister from its no longer alive parent). +This overwriting might easily happen if you run a Jupyter cell multiple times. +Please ensure that you always overwrite or delete C++ dependent variables in +the reverse order of their initialization. + +.. code-block:: python + + CGA = CG = G = None + G = ogdf.Graph() + CG = ogdf.ClusterGraph(G) + CGA = ogdf.ClusterGraphAttributes(CG, ogdf.ClusterGraphAttributes.all) + diff --git a/docs/examples/ogdf-includes.gml b/docs/examples/ogdf-includes.gml new file mode 100644 index 0000000..20e661f --- /dev/null +++ b/docs/examples/ogdf-includes.gml @@ -0,0 +1,58244 @@ +Creator "ogdf::GraphIO::writeGML" +graph +[ + directed 1 + node + [ + id 0 + template "" + label "coin/ClpDualRowDantzig.hpp" + weight 0 + type "vertex" + graphics + [ + x 210.0000000000 + y 8913.3333333333 + z 0.0000000000 + label [ x 0.0000000000 y 0.0000000000 z 0.0000000000 ] + w 130.0000000000 + h 20.0000000000 + fill "#FFFFFF" + fillbg "#000000" + outline "#000000" + pattern "Solid" + stipple "Solid" + lineWidth 1.0000000000 + type "Rect" + ] + ] + node + [ + id 1 + template "" + label "coin/OsiColCut.hpp" + weight 0 + type "vertex" + graphics + [ + x 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[ + x 10469.0000000000 + y 802.3333333333 + width 13009.5000000000 + height 6422.0000000000 + fill "#FFFFFF" + fillbg "#000000" + pattern "None" + color "#808080" + lineWidth 1.0000000000 + stipple "Dash" + style "rectangle" + ] + vertex "749" + vertex "750" + vertex "751" + ] + ] +] diff --git a/docs/examples/ogdf-includes.ipynb b/docs/examples/ogdf-includes.ipynb new file mode 100644 index 0000000..c69b657 --- /dev/null +++ b/docs/examples/ogdf-includes.ipynb @@ -0,0 +1,165 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "env: OGDF_BUILD_DIR=~/GitLab/ogdf/ogdf/build-debug\n" + ] + } + ], + "source": [ + "%env OGDF_BUILD_DIR=~/ogdf/build-debug\n", + "import os\n", + "import re\n", + "from collections import defaultdict\n", + "\n", + "from ogdf_python import ogdf, cppinclude, nullptr" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "752 1895 64 5\n" + ] + } + ], + "source": [ + "try:\n", + " from ogdf_python import BUILD_DIR\n", + " DIR = os.path.join(os.path.dirname(BUILD_DIR), \"include\")\n", + "except ImportError:\n", + " from ogdf_python import INSTALL_DIR\n", + " DIR = os.path.join(os.path.join(INSTALL_DIR, \"include\"))\n", + "\n", + "HEADERS = [\n", + " os.path.relpath(os.path.join(root,file),DIR)\n", + " for root, dirs, files in os.walk(DIR)\n", + " for file in files\n", + "]\n", + "CGA = CG = G = None\n", + "G = ogdf.Graph()\n", + "CG = ogdf.ClusterGraph(G)\n", + "CG.setUpdateDepth(True)\n", + "CGA = ogdf.ClusterGraphAttributes(CG, ogdf.ClusterGraphAttributes.all)\n", + "\n", + "NODES = {h:G.newNode() for h in HEADERS}\n", + "UNKNOWN = defaultdict(list)\n", + "CLUSTERS = {}\n", + "\n", + "\n", + "for header, node in NODES.items():\n", + " CGA.label[node] = header\n", + " CGA.width[node] = len(header) * 5\n", + " \n", + " parents = os.path.dirname(header).split(os.sep)\n", + " cluster_path = cluster = None\n", + " for i in range(1,len(parents)+1):\n", + " cluster_path = os.sep.join(parents[:i])\n", + " if cluster_path not in CLUSTERS:\n", + " cluster = CLUSTERS[cluster_path] = CG.createEmptyCluster(cluster or nullptr)\n", + " CGA.label[cluster] = cluster_path\n", + " CGA.strokeType[cluster] = ogdf.StrokeType.Dash\n", + " else:\n", + " cluster = CLUSTERS[cluster_path]\n", + " if cluster is not None:\n", + " CG.reassignNode(node, cluster)\n", + " \n", + " with open(os.path.join(DIR, header)) as f:\n", + " for match in re.finditer(\"#include\\s+([\\\"<])(.*)([\\\">])\", f.read()):\n", + " include = match.group(2)\n", + " include_rel = os.path.join(os.path.dirname(header), include)\n", + " if include in NODES:\n", + " e = G.newEdge(node, NODES[include])\n", + " elif include_rel in NODES and match.group(1) == \"\\\"\":\n", + " e = G.newEdge(node, NODES[include_rel])\n", + " else:\n", + " UNKNOWN[match.group(1)+include+match.group(3)].append(header)\n", + "\n", + "print(G.numberOfNodes(), G.numberOfEdges(), CG.numberOfClusters(), CG.treeDepth())" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": { + "scrolled": true, + "pycharm": { + "name": "#%%\n" + } + }, + "outputs": [ + { + "data": { + "text/plain": "", + "text/html": 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/MinHeap.h\n\t\n\t\n\t\t\n\t\togdf/basic/SubsetEnumerator.h\n\t\n\t\n\t\t\n\t\togdf/basic/DisjointSets.h\n\t\n\t\n\t\t\n\t\togdf/basic/Timeouter.h\n\t\n\t\n\t\t\n\t\togdf/basic/DualGraph.h\n\t\n\t\n\t\t\n\t\togdf/tree/TreeLayout.h\n\t\n\t\n\t\t\n\t\togdf/tree/RadialTreeLayout.h\n\t\n\t\n\t\t\n\t\togdf/tree/LCA.h\n\t\n\t\n\t\t\n\t\togdf/planarity/optimal_crossing_minimizer/Base.h\n\t\n\t\n\t\t\n\t\togdf/planarity/optimal_crossing_minimizer/MasterBase.h\n\t\n\t\n\t\t\n\t\togdf/planarity/optimal_crossing_minimizer/common.h\n\t\n\t\n\t\t\n\t\togdf/planarity/boyer_myrvold/BoyerMyrvoldInit.h\n\t\n\t\n\t\t\n\t\togdf/planarity/boyer_myrvold/FindKuratowskis.h\n\t\n\t\n\t\t\n\t\togdf/planarity/boyer_myrvold/BoyerMyrvoldPlanar.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeDualAscent.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowEdmondsKarp.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ConnectivityTester.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeShore.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/Triconnectivity.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/EdgeIndependentSpanningTrees.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowSTPlanarDigraph.h\n\t\n\t\n\t\t\n\t\tcoin/ClpPredictorCorrector.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpEventHandler.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveTighten.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpConstraintLinear.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinWarmStart.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyWssmp.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiCut.hpp\n\t\n\t\n\t\t\n\t\tcoin/config.h\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyWssmpKKT.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveForcing.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPdcoBase.hpp\n\t\n\t\n\t\t\n\t\tcoin/Readme.txt\n\t\n\t\n\t\t\n\t\tcoin/OsiBranchingObject.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpConstraint.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveEmpty.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinSnapshot.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpLsqr.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpNonLinearCost.hpp\n\t\n\t\n\t\t\n\t\tcoin/configall_system.h\n\t\n\t\n\t\t\n\t\tcoin/CoinUtilsConfig.h\n\t\n\t\n\t\t\n\t\tcoin/CoinPackedMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyTaucs.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpNetworkMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPackedMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveSingleton.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolvePsdebug.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpParameters.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiAuxInfo.hpp\n\t\n\t\n\t\t\n\t\tcoin/Idiot.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiSolverParameters.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinHelperFunctions.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinModel.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpDynamicMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpGubMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpSimplexDual.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyDense.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPlusMinusOneMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveImpliedFree.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpSimplexNonlinear.hpp\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/SaveStatic.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/Triple.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/Save.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/FullComponentDecisions.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/SaveDynamic.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/Full3ComponentGeneratorModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/HeavyPathDecomposition.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/FullComponentGeneratorCaller.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/FullComponentStore.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/EdgeWeightedGraphCopy.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/SaveEnum.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/steiner_tree/FullComponentGeneratorDreyfusWagner.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreePrimalDual.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSTCutModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ModifiedNibbleClusterer.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSTCutDijkstra.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ShortestPathModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/AStarSearch.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ShortestPathAlgorithms.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinimumCut.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeZelikovsky.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/Matching.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/GraphReduction.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeMehlhorn.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeGoemans139.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeDirectedCut.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/SteinerTreeLowerBoundDualAscent.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxAdjOrdering.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinCostFlowModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/PageRank.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/Dijkstra.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeRZLoss.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSTCutBFS.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowSTPlanarItaiShiloach.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/Voronoi.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/SteinerTreePreprocessing.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ShortestPathWithBFM.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSTCutMaxFlow.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeTakahashi.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowPlanarErickson.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/Clusterer.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ConvexHull.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinSteinerTreeKou.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/ClustererModule.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MinCostFlowReinelt.h\n\t\n\t\n\t\t\n\t\togdf/graphalg/MaxFlowGoldbergTarjan.h\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveZeros.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinFileIO.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinOslFactorization.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiCpxSolverInterface.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpConstraintQuadratic.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpDummyMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiCollections.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPrimalColumnPivot.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinSearchTree.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveTripleton.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinModelUseful.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinIndexedVector.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinMessage.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinSort.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinMpsIO.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPdco.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinLpIO.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpFactorization.hpp\n\t\n\t\n\t\t\n\t\tcoin/configall_system_msc.h\n\t\n\t\n\t\t\n\t\tcoin/OsiSolverInterface.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinWarmStartDual.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinFinite.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpMatrixBase.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiPresolve.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPragma.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiChooseVariable.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinTime.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinSimpFactorization.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyBase.hpp\n\t\n\t\n\t\t\n\t\tcoin/MyEventHandler.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyMumps.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpSolve.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinShallowPackedVector.hpp\n\t\n\t\n\t\t\n\t\tcoin/config_default.h\n\t\n\t\n\t\t\n\t\tcoin/ClpDualRowPivot.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinTypes.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpModel.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiSolverBranch.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinOslC.h\n\t\n\t\n\t\t\n\t\tcoin/ClpLinearObjective.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveUseless.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinError.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinAlloc.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpHelperFunctions.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiColCut.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpDualRowDantzig.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpConfig.h\n\t\n\t\n\t\t\n\t\tcoin/CoinWarmStartVector.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpDynamicExampleMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpGubDynamicMatrix.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPrimalColumnDantzig.hpp\n\t\n\t\n\t\t\n\t\tcoin/Coin_C_defines.h\n\t\n\t\n\t\t\n\t\tcoin/MyMessageHandler.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPrimalColumnSteepest.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveDual.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinBuild.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiRowCut.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPackedVector.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveDoubleton.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiClpSolverInterface.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpDualRowSteepest.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveDupcol.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpPresolve.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinDenseVector.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpInterior.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpMessage.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpNode.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinWarmStartPrimalDual.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpCholeskyUfl.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinFactorization.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinMessageHandler.hpp\n\t\n\t\n\t\t\n\t\tcoin/config_clp_default.h\n\t\n\t\n\t\t\n\t\tcoin/ClpSimplexPrimal.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpObjective.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinStructuredModel.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveSubst.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinFloatEqual.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiCuts.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpSimplex.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinParam.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiRowCutDebugger.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpQuadraticObjective.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinDistance.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPackedVectorBase.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinDenseFactorization.hpp\n\t\n\t\n\t\t\n\t\tcoin/ClpSimplexOther.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinWarmStartBasis.hpp\n\t\n\t\n\t\t\n\t\tcoin/config_coinutils_default.h\n\t\n\t\n\t\t\n\t\tcoin/ClpNetworkBasis.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveIsolated.hpp\n\t\n\t\n\t\t\n\t\tcoin/OsiGrbSolverInterface.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinSignal.hpp\n\t\n\t\n\t\t\n\t\tcoin/CoinPresolveFixed.hpp\n\t\n\t\n\t\t\n\t\togdf/planarlayout/LeftistOrdering.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/SchnyderLayout.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/PlanarStraightLayout.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/MMCBBase.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/MMCBDoubleGrid.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/MMCBLocalStretch.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/PlanarDrawLayout.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/FPPLayout.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/TriconnectedShellingOrder.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/MixedModelCrossingsBeautifierModule.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/GridLayoutModule.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/ShellingOrderModule.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/BiconnectedShellingOrder.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/internal/CommonCompactionConstraintGraphBase.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/internal/RoutingChannel.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/edge_router/NodeInfo.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/EdgeRouter.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/KandinskyLayout.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/FlowCompaction.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/OrthoShaper.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/GridCompactionConstraintGraph.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/GridFlowCompaction.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/OrthoCompactionModule.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/OrthoGridLayout.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/MinimumEdgeDistances.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/CompactionConstraintGraph.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/OrthoLayout.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/LongestPathCompaction.h\n\t\n\t\n\t\t\n\t\togdf/orthogonal/OrthoRep.h\n\t\n\t\n\t\t\n\t\togdf/packing/SimpleCCPacker.h\n\t\n\t\n\t\t\n\t\togdf/packing/TileToRowsCCPacker.h\n\t\n\t\n\t\t\n\t\togdf/packing/CCLayoutPackModule.h\n\t\n\t\n\t\t\n\t\togdf/packing/ComponentSplitterLayout.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/DynamicSPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/PertinentGraph.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/Skeleton.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/DynamicPlanarSPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/PlanarSPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/DynamicBCTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/SPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/DynamicSPQRForest.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/DynamicSkeleton.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/StaticPlanarSPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/BCTree.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/StaticSkeleton.h\n\t\n\t\n\t\t\n\t\togdf/decomposition/StaticSPQRTree.h\n\t\n\t\n\t\t\n\t\togdf/lpsolver/LPSolver.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/FMMMOptions.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/numexcept.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/EdgeAttributes.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/MAARPacking.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/Multilevel.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/NewMultipoleMethod.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/FruchtermanReingold.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/Set.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/NodeAttributes.h\n\t\n\t\n\t\t\n\t\togdf/energybased/fmmm/common.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/Repulsion.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/UniformGrid.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/NodePairEnergy.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/Planarity.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/PlanarityGrid.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/Overlap.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/Attraction.h\n\t\n\t\n\t\t\n\t\togdf/energybased/davidson_harel/EnergyFunction.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/SpringEmbedderBase.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/SE_ForceModel.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/MasterBase.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/SEGV_ForceModel.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/WorkerBase.h\n\t\n\t\n\t\t\n\t\togdf/energybased/spring_embedder/common.h\n\t\n\t\n\t\t\n\t\togdf/energybased/PivotMDS.h\n\t\n\t\n\t\t\n\t\togdf/energybased/SpringEmbedderGridVariant.h\n\t\n\t\n\t\t\n\t\togdf/energybased/FastMultipoleEmbedder.h\n\t\n\t\n\t\t\n\t\togdf/energybased/SpringForceModel.h\n\t\n\t\n\t\t\n\t\togdf/energybased/StressMinimization.h\n\t\n\t\n\t\t\n\t\togdf/energybased/GEMLayout.h\n\t\n\t\n\t\t\n\t\togdf/energybased/SpringEmbedderKK.h\n\t\n\t\n\t\t\n\t\togdf/energybased/DavidsonHarel.h\n\t\n\t\n\t\t\n\t\togdf/energybased/ForceLayoutModule.h\n\t\n\t\n\t\t\n\t\togdf/energybased/DTreeMultilevelEmbedder.h\n\t\n\t\n\t\t\n\t\togdf/energybased/TutteLayout.h\n\t\n\t\n\t\t\n\t\togdf/energybased/SpringEmbedderFRExact.h\n\t\n\t\n\t\t\n\t\togdf/energybased/MultilevelLayout.h\n\t\n\t\n\t\t\n\t\togdf/energybased/FMMMLayout.h\n\t\n\t\n\t\t\n\t\togdf/energybased/NodeRespecterLayout.h\n\t\n\t\n\t\t\n\t\togdf/energybased/SpringEmbedderExact.h\n\t\n\t\n\t\t\n\t\togdf/energybased/DavidsonHarelLayout.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/mixed_model_layout/MixedModelBase.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/mixed_model_layout/IOPoints.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/mixed_model_layout/MMOrder.h\n\t\n\t\n\t\t\n\t\togdf/planarlayout/MixedModelLayou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\n\t\n\t\n\t\t\n\t\togdf/upward/FUPSModule.h\n\t\n\t\n\t\t\n\t\togdf/upward/UpwardPlanarizationLayout.h\n\t\n\t\n\t\t\n\t\togdf/upward/FaceSinkGraph.h\n\t\n\t\n\t\t\n\t\togdf/upward/LayerBasedUPRLayout.h\n\t\n\t\n\t\t\n\t\togdf/upward/MaximalFUPS.h\n\t\n\t\n\t\t\n\t\togdf/upward/UPRLayoutModule.h\n\t\n\t\n\t\t\n\t\togdf/upward/UpwardPlanarity.h\n\t\n\t\n\t\t\n\t\togdf/cluster/internal/MaxCPlanarMaster.h\n\t\n\n" + }, + "execution_count": 3, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "cppinclude(\"ogdf/layered/SugiyamaLayout.h\")\n", + "cppinclude(\"ogdf/layered/MedianHeuristic.h\")\n", + "cppinclude(\"ogdf/layered/OptimalHierarchyClusterLayout.h\")\n", + "cppinclude(\"ogdf/layered/OptimalRanking.h\")\n", + "\n", + "SL = ogdf.SugiyamaLayout()\n", + "r = ogdf.OptimalRanking()\n", + "r.__python_owns__ = False\n", + "SL.setRanking(r)\n", + "h = ogdf.MedianHeuristic()\n", + "h.__python_owns__ = False\n", + "SL.setCrossMin(h)\n", + "\n", + "ohl = ogdf.OptimalHierarchyClusterLayout()\n", + "ohl.__python_owns__ = False\n", + "ohl.layerDistance(30.0)\n", + "ohl.nodeDistance(100.0)\n", + "ohl.weightBalancing(0.8)\n", + "SL.setClusterLayout(ohl)\n", + "\n", + "SL.call(CGA)\n", + "for name, node in NODES.items():\n", + " CGA.width[node] = len(name) * 5\n", + "CGA.updateClusterPositions()\n", + "ogdf.GraphIO.drawSVG(CGA, \"ogdf-includes.svg\")\n", + "ogdf.GraphIO.write(CGA, \"ogdf-includes.gml\")\n", + "CGA" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "ogdf-python", + "language": "python", + "name": "ogdf-python" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.3" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} \ No newline at end of file diff --git a/docs/examples/ogdf-includes.svg b/docs/examples/ogdf-includes.svg new file mode 100644 index 0000000..17a4cf4 --- /dev/null +++ b/docs/examples/ogdf-includes.svg @@ -0,0 +1,10846 @@ + + + + + + + + + coin + + + + ogdf + + + + ogdf/graphalg + + + + ogdf/cluster + + + + ogdf/upward + + + + ogdf/fileformats + + + + ogdf/simultaneous + + + + ogdf/lpsolver + + + + ogdf/decomposition + + + + ogdf/packing + + + + ogdf/orthogonal + + + + ogdf/planarlayout + + + + 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ogdf/planarity/boyer_myrvold/BoyerMyrvoldPlanar.h + + + + ogdf/graphalg/MinSteinerTreeDualAscent.h + + + + ogdf/graphalg/MaxFlowEdmondsKarp.h + + + + ogdf/graphalg/ConnectivityTester.h + + + + ogdf/graphalg/MaxFlowModule.h + + + + ogdf/graphalg/MinSteinerTreeShore.h + + + + ogdf/graphalg/Triconnectivity.h + + + + ogdf/graphalg/EdgeIndependentSpanningTrees.h + + + + ogdf/graphalg/MaxFlowSTPlanarDigraph.h + + + + coin/ClpPredictorCorrector.hpp + + + + coin/ClpEventHandler.hpp + + + + coin/CoinPresolveTighten.hpp + + + + coin/ClpConstraintLinear.hpp + + + + coin/CoinWarmStart.hpp + + + + coin/ClpCholeskyWssmp.hpp + + + + coin/OsiCut.hpp + + + + coin/config.h + + + + coin/ClpCholeskyWssmpKKT.hpp + + + + coin/CoinPresolveForcing.hpp + + + + coin/ClpPdcoBase.hpp + + + + coin/Readme.txt + + + + coin/OsiBranchingObject.hpp + + + + coin/ClpConstraint.hpp + + + + coin/CoinPresolveEmpty.hpp + + + + coin/CoinSnapshot.hpp + + + + coin/ClpLsqr.hpp + + + + coin/ClpNonLinearCost.hpp + + + + coin/configall_system.h + + + + coin/CoinUtilsConfig.h + + + + coin/CoinPackedMatrix.hpp + + + + coin/ClpCholeskyTaucs.hpp + + + + coin/ClpNetworkMatrix.hpp + + + + coin/ClpPackedMatrix.hpp + + + + coin/CoinPresolveSingleton.hpp + + + + coin/CoinPresolvePsdebug.hpp + + + + coin/ClpParameters.hpp + + + + coin/OsiAuxInfo.hpp + + + + coin/Idiot.hpp + + + + coin/OsiSolverParameters.hpp + + + + coin/CoinHelperFunctions.hpp + + + + coin/CoinModel.hpp + + + + coin/ClpDynamicMatrix.hpp + + + + coin/ClpGubMatrix.hpp + + + + coin/ClpSimplexDual.hpp + + + + coin/ClpCholeskyDense.hpp + + + + coin/ClpPlusMinusOneMatrix.hpp + + + + coin/CoinPresolveImpliedFree.hpp + + + + coin/ClpSimplexNonlinear.hpp + + + + ogdf/graphalg/steiner_tree/SaveStatic.h + + + + ogdf/graphalg/steiner_tree/Triple.h + + + + ogdf/graphalg/steiner_tree/Save.h + + + + ogdf/graphalg/steiner_tree/FullComponentDecisions.h + + + + ogdf/graphalg/steiner_tree/SaveDynamic.h + + + + ogdf/graphalg/steiner_tree/Full3ComponentGeneratorModule.h + + + + ogdf/graphalg/steiner_tree/HeavyPathDecomposition.h + + + + ogdf/graphalg/steiner_tree/FullComponentGeneratorCaller.h + + + + ogdf/graphalg/steiner_tree/FullComponentStore.h + + + + ogdf/graphalg/steiner_tree/EdgeWeightedGraphCopy.h + + + + ogdf/graphalg/steiner_tree/SaveEnum.h + + + + ogdf/graphalg/steiner_tree/FullComponentGeneratorDreyfusWagner.h + + + + ogdf/graphalg/MinSteinerTreePrimalDual.h + + + + ogdf/graphalg/MinSTCutModule.h + + + + ogdf/graphalg/ModifiedNibbleClusterer.h + + + + ogdf/graphalg/MinSTCutDijkstra.h + + + + ogdf/graphalg/ShortestPathModule.h + + + + ogdf/graphalg/AStarSearch.h + + + + ogdf/graphalg/ShortestPathAlgorithms.h + + + + ogdf/graphalg/MinimumCut.h + + + + ogdf/graphalg/MinSteinerTreeZelikovsky.h + + + + ogdf/graphalg/Matching.h + + + + ogdf/graphalg/GraphReduction.h + + + + ogdf/graphalg/MinSteinerTreeMehlhorn.h + + + + ogdf/graphalg/MinSteinerTreeGoemans139.h + + + + ogdf/graphalg/MinSteinerTreeDirectedCut.h + + + + ogdf/graphalg/SteinerTreeLowerBoundDualAscent.h + + + + ogdf/graphalg/MaxAdjOrdering.h + + + + ogdf/graphalg/MinCostFlowModule.h + + + + ogdf/graphalg/PageRank.h + + + + ogdf/graphalg/MinSteinerTreeModule.h + + + + ogdf/graphalg/Dijkstra.h + + + + ogdf/graphalg/MinSteinerTreeRZLoss.h + + + + ogdf/graphalg/MinSTCutBFS.h + + + + ogdf/graphalg/MaxFlowSTPlanarItaiShiloach.h + + + + ogdf/graphalg/Voronoi.h + + + + ogdf/graphalg/SteinerTreePreprocessing.h + + + + ogdf/graphalg/ShortestPathWithBFM.h + + + + ogdf/graphalg/MinSTCutMaxFlow.h + + + + ogdf/graphalg/MinSteinerTreeTakahashi.h + + + + ogdf/graphalg/MaxFlowPlanarErickson.h + + + + ogdf/graphalg/Clusterer.h + + + + ogdf/graphalg/ConvexHull.h + + + + ogdf/graphalg/MinSteinerTreeKou.h + + + + ogdf/graphalg/ClustererModule.h + + + + ogdf/graphalg/MinCostFlowReinelt.h + + + + ogdf/graphalg/MaxFlowGoldbergTarjan.h + + + + coin/CoinPresolveZeros.hpp + + + + coin/CoinFileIO.hpp + + + + coin/CoinOslFactorization.hpp + + + + coin/OsiCpxSolverInterface.hpp + + + + coin/ClpConstraintQuadratic.hpp + + + + coin/ClpDummyMatrix.hpp + + + + coin/OsiCollections.hpp + + + + coin/ClpPrimalColumnPivot.hpp + + + + coin/CoinSearchTree.hpp + + + + coin/CoinPresolveTripleton.hpp + + + + coin/CoinModelUseful.hpp + + + + coin/CoinIndexedVector.hpp + + + + coin/CoinPresolveMatrix.hpp + + + + coin/CoinMessage.hpp + + + + coin/CoinSort.hpp + + + + coin/CoinMpsIO.hpp + + + + coin/ClpPdco.hpp + + + + coin/CoinLpIO.hpp + + + + coin/ClpFactorization.hpp + + + + coin/configall_system_msc.h + + + + coin/OsiSolverInterface.hpp + + + + coin/CoinWarmStartDual.hpp + + + + coin/CoinFinite.hpp + + + + coin/ClpMatrixBase.hpp + + + + coin/OsiPresolve.hpp + + + + coin/CoinPragma.hpp + + + + coin/OsiChooseVariable.hpp + + + + coin/CoinTime.hpp + + + + coin/CoinSimpFactorization.hpp + + + + coin/ClpCholeskyBase.hpp + + + + coin/MyEventHandler.hpp + + + + coin/ClpCholeskyMumps.hpp + + + + coin/ClpSolve.hpp + + + + coin/CoinShallowPackedVector.hpp + + + + coin/config_default.h + + + + coin/ClpDualRowPivot.hpp + + + + coin/CoinTypes.hpp + + + + coin/ClpModel.hpp + + + + coin/OsiSolverBranch.hpp + + + + coin/CoinOslC.h + + + + coin/ClpLinearObjective.hpp + + + + coin/CoinPresolveUseless.hpp + + + + coin/CoinError.hpp + + + + coin/CoinAlloc.hpp + + + + coin/ClpHelperFunctions.hpp + + + + coin/OsiColCut.hpp + + + + coin/ClpDualRowDantzig.hpp + + + + coin/ClpConfig.h + + + + coin/CoinWarmStartVector.hpp + + + + coin/ClpDynamicExampleMatrix.hpp + + + + coin/ClpGubDynamicMatrix.hpp + + + + coin/ClpPrimalColumnDantzig.hpp + + + + coin/Coin_C_defines.h + + + + coin/MyMessageHandler.hpp + + + + coin/ClpPrimalColumnSteepest.hpp + + + + coin/CoinPresolveDual.hpp + + + + coin/CoinBuild.hpp + + + + coin/OsiRowCut.hpp + + + + coin/CoinPackedVector.hpp + + + + coin/CoinPresolveDoubleton.hpp + + + + coin/OsiClpSolverInterface.hpp + + + + coin/ClpDualRowSteepest.hpp + + + + coin/CoinPresolveDupcol.hpp + + + + coin/ClpPresolve.hpp + + + + coin/CoinDenseVector.hpp + + + + coin/ClpInterior.hpp + + + + coin/ClpMessage.hpp + + + + coin/ClpNode.hpp + + + + coin/CoinWarmStartPrimalDual.hpp + + + + coin/ClpCholeskyUfl.hpp + + + + coin/CoinFactorization.hpp + + + + coin/CoinMessageHandler.hpp + + + + coin/config_clp_default.h + + + + coin/ClpSimplexPrimal.hpp + + + + coin/ClpObjective.hpp + + + + coin/CoinStructuredModel.hpp + + + + coin/CoinPresolveSubst.hpp + + + + coin/CoinFloatEqual.hpp + + + + coin/OsiCuts.hpp + + + + coin/ClpSimplex.hpp + + + + coin/CoinParam.hpp + + + + coin/OsiRowCutDebugger.hpp + + + + coin/ClpQuadraticObjective.hpp + + + + coin/CoinDistance.hpp + + + + coin/CoinPackedVectorBase.hpp + + + + coin/CoinDenseFactorization.hpp + + + + coin/ClpSimplexOther.hpp + + + + coin/CoinWarmStartBasis.hpp + + + + coin/config_coinutils_default.h + + + + coin/ClpNetworkBasis.hpp + + + + coin/CoinPresolveIsolated.hpp + + + + coin/OsiGrbSolverInterface.hpp + + + + coin/CoinSignal.hpp + + + + coin/CoinPresolveFixed.hpp + + + + ogdf/planarlayout/LeftistOrdering.h + + + + ogdf/planarlayout/SchnyderLayout.h + + + + ogdf/planarlayout/PlanarStraightLayout.h + + + + ogdf/planarlayout/MMCBBase.h + + + + ogdf/planarlayout/MMCBDoubleGrid.h + + + + ogdf/planarlayout/MMCBLocalStretch.h + + + + ogdf/planarlayout/PlanarDrawLayout.h + + + + ogdf/planarlayout/FPPLayout.h + + + + ogdf/planarlayout/TriconnectedShellingOrder.h + + + + ogdf/planarlayout/MixedModelCrossingsBeautifierModule.h + + + + ogdf/planarlayout/GridLayoutModule.h + + + + ogdf/planarlayout/ShellingOrderModule.h + + + + ogdf/planarlayout/BiconnectedShellingOrder.h + + + + ogdf/orthogonal/internal/CommonCompactionConstraintGraphBase.h + + + + ogdf/orthogonal/internal/RoutingChannel.h + + + + ogdf/orthogonal/edge_router/NodeInfo.h + + + + ogdf/orthogonal/EdgeRouter.h + + + + ogdf/orthogonal/KandinskyLayout.h + + + + ogdf/orthogonal/FlowCompaction.h + + + + ogdf/orthogonal/OrthoShaper.h + + + + ogdf/orthogonal/GridCompactionConstraintGraph.h + + + + ogdf/orthogonal/GridFlowCompaction.h + + + + ogdf/orthogonal/OrthoCompactionModule.h + + + + ogdf/orthogonal/OrthoGridLayout.h + + + + ogdf/orthogonal/MinimumEdgeDistances.h + + + + ogdf/orthogonal/CompactionConstraintGraph.h + + + + ogdf/orthogonal/OrthoLayout.h + + + + ogdf/orthogonal/LongestPathCompaction.h + + + + ogdf/orthogonal/OrthoRep.h + + + + ogdf/packing/SimpleCCPacker.h + + + + ogdf/packing/TileToRowsCCPacker.h + + + + ogdf/packing/CCLayoutPackModule.h + + + + ogdf/packing/ComponentSplitterLayout.h + + + + ogdf/decomposition/DynamicSPQRTree.h + + + + ogdf/decomposition/PertinentGraph.h + + + + ogdf/decomposition/Skeleton.h + + + + ogdf/decomposition/DynamicPlanarSPQRTree.h + + + + ogdf/decomposition/PlanarSPQRTree.h + + + + ogdf/decomposition/DynamicBCTree.h + + + + ogdf/decomposition/SPQRTree.h + + + + ogdf/decomposition/DynamicSPQRForest.h + + + + ogdf/decomposition/DynamicSkeleton.h + + + + ogdf/decomposition/StaticPlanarSPQRTree.h + + + + ogdf/decomposition/BCTree.h + + + + ogdf/decomposition/StaticSkeleton.h + + + + ogdf/decomposition/StaticSPQRTree.h + + + + ogdf/lpsolver/LPSolver.h + + + + ogdf/energybased/fmmm/FMMMOptions.h + + + + ogdf/energybased/fmmm/numexcept.h + + + + ogdf/energybased/fmmm/EdgeAttributes.h + + + + ogdf/energybased/fmmm/MAARPacking.h + + + + ogdf/energybased/fmmm/Multilevel.h + + + + ogdf/energybased/fmmm/NewMultipoleMethod.h + + + + ogdf/energybased/fmmm/FruchtermanReingold.h + + + + ogdf/energybased/fmmm/Set.h + + + + ogdf/energybased/fmmm/NodeAttributes.h + + + + ogdf/energybased/fmmm/common.h + + + + ogdf/energybased/davidson_harel/Repulsion.h + + + + ogdf/energybased/davidson_harel/UniformGrid.h + + + + ogdf/energybased/davidson_harel/NodePairEnergy.h + + + + ogdf/energybased/davidson_harel/Planarity.h + + + + ogdf/energybased/davidson_harel/PlanarityGrid.h + + + + ogdf/energybased/davidson_harel/Overlap.h + + + + ogdf/energybased/davidson_harel/Attraction.h + + + + ogdf/energybased/davidson_harel/EnergyFunction.h + + + + ogdf/energybased/spring_embedder/SpringEmbedderBase.h + + + + ogdf/energybased/spring_embedder/SE_ForceModel.h + + + + ogdf/energybased/spring_embedder/MasterBase.h + + + + ogdf/energybased/spring_embedder/SEGV_ForceModel.h + + + + ogdf/energybased/spring_embedder/WorkerBase.h + + + + ogdf/energybased/spring_embedder/common.h + + + + ogdf/energybased/PivotMDS.h + + + + ogdf/energybased/SpringEmbedderGridVariant.h + + + + ogdf/energybased/FastMultipoleEmbedder.h + + + + ogdf/energybased/SpringForceModel.h + + + + ogdf/energybased/StressMinimization.h + + + + ogdf/energybased/GEMLayout.h + + + + ogdf/energybased/SpringEmbedderKK.h + + + + ogdf/energybased/DavidsonHarel.h + + + + ogdf/energybased/ForceLayoutModule.h + + + + ogdf/energybased/DTreeMultilevelEmbedder.h + + + + ogdf/energybased/TutteLayout.h + + + + ogdf/energybased/SpringEmbedderFRExact.h + + + + ogdf/energybased/MultilevelLayout.h + + + + ogdf/energybased/FMMMLayout.h + + + + ogdf/energybased/NodeRespecterLayout.h + + + + ogdf/energybased/SpringEmbedderExact.h + + + + ogdf/energybased/DavidsonHarelLayout.h + + + + ogdf/planarlayout/mixed_model_layout/MixedModelBase.h + + + + ogdf/planarlayout/mixed_model_layout/IOPoints.h + + + + ogdf/planarlayout/mixed_model_layout/MMOrder.h + + + + ogdf/planarlayout/MixedModelLayout.h + + + + ogdf/planarlayout/ShellingOrder.h + + + + ogdf/planarlayout/BitonicOrdering.h + + + + ogdf/cluster/internal/MinimalClusterConnection.h + + + + ogdf/cluster/internal/CPlanarEdgeVar.h + + + + ogdf/cluster/internal/MaxCPlanarSub.h + + + + ogdf/cluster/internal/ClusterPQContainer.h + + + + ogdf/cluster/internal/basics.h + + + + ogdf/cluster/internal/MaxPlanarEdgesConstraint.h + + + + ogdf/cluster/internal/CutConstraint.h + + + + ogdf/cluster/internal/CPlanarityMaster.h + + + + ogdf/cluster/internal/CP_MasterBase.h + + + + ogdf/cluster/internal/EdgeVar.h + + + + ogdf/cluster/internal/ChunkConnection.h + + + + ogdf/cluster/internal/ClusterKuratowskiConstraint.h + + + + ogdf/cluster/internal/CPlanaritySub.h + + + + ogdf/cluster/internal/CPlanarSubClusteredST.h + + + + ogdf/cluster/ClusterSet.h + + + + ogdf/cluster/ClusterAnalysis.h + + + + ogdf/cluster/CconnectClusterPlanarEmbed.h + + + + ogdf/cluster/ClusterPlanarModule.h + + + + ogdf/cluster/CPlanarSubgraphModule.h + + + + ogdf/cluster/ClusterOrthoShaper.h + + + + ogdf/cluster/ClusterGraphObserver.h + + + + ogdf/cluster/CPlanarSubClusteredGraph.h + + + + ogdf/cluster/CconnectClusterPlanar.h + + + + ogdf/cluster/MaximumCPlanarSubgraph.h + + + + ogdf/cluster/ClusterGraphCopyAttributes.h + + + + ogdf/cluster/ClusterPlanarizationLayout.h + + + + ogdf/cluster/ClusterArray.h + + + + ogdf/cluster/ClusterOrthoLayout.h + + + + ogdf/cluster/LayoutClusterPlanRepModule.h + + + + ogdf/cluster/ClusterPlanarity.h + + + + ogdf/cluster/ClusterGraph.h + + + + ogdf/cluster/ClusterGraphAttributes.h + + + + ogdf/cluster/ClusterPlanRep.h + + + + ogdf/cluster/CPlanarEdgeInserter.h + + + + ogdf/cluster/HananiTutteCPlanarity.h + + + + ogdf/graphalg/steiner_tree/goemans/CoreEdgeModule.h + + + + ogdf/graphalg/steiner_tree/goemans/CoreEdgeRandomSpanningTree.h + + + + ogdf/graphalg/steiner_tree/goemans/BlowupGraph.h + + + + ogdf/graphalg/steiner_tree/goemans/Approximation.h + + + + ogdf/graphalg/steiner_tree/goemans/BlowupComponents.h + + + + ogdf/graphalg/steiner_tree/Full3ComponentGeneratorEnumeration.h + + + + ogdf/graphalg/steiner_tree/Full2ComponentGenerator.h + + + + ogdf/graphalg/steiner_tree/EdgeWeightedGraph.h + + + + ogdf/graphalg/steiner_tree/FullComponentGeneratorDreyfusWagnerWithoutMatrix.h + + + + ogdf/graphalg/steiner_tree/Full3ComponentGeneratorVoronoi.h + + + + ogdf/graphalg/steiner_tree/common_algorithms.h + + + + ogdf/graphalg/steiner_tree/LPRelaxationSER.h + + + + ogdf/simultaneous/SimDrawCaller.h + + + + ogdf/simultaneous/SimDrawCreator.h + + + + ogdf/simultaneous/SimDrawManipulatorModule.h + + + + ogdf/simultaneous/SimDrawCreatorSimple.h + + + + ogdf/simultaneous/SimDraw.h + + + + ogdf/simultaneous/TwoLayerCrossMinSimDraw.h + + + + ogdf/simultaneous/SimDrawColorizer.h + + + + ogdf/fileformats/SvgPrinter.h + + + + ogdf/fileformats/GexfParser.h + + + + ogdf/fileformats/GraphML.h + + + + ogdf/fileformats/GraphIO.h + + + + ogdf/fileformats/DOT.h + + + + ogdf/fileformats/TlpParser.h + + + + ogdf/fileformats/GraphMLParser.h + + + + ogdf/fileformats/GmlParser.h + + + + ogdf/fileformats/DotParser.h + + + + ogdf/fileformats/GML.h + + + + ogdf/fileformats/Tlp.h + + + + ogdf/fileformats/GdfParser.h + + + + ogdf/fileformats/DotLexer.h + + + + ogdf/fileformats/GDF.h + + + + ogdf/fileformats/Utils.h + + + + ogdf/fileformats/GEXF.h + + + + ogdf/fileformats/TlpLexer.h + + + + ogdf/fileformats/DLParser.h + + + + ogdf/upward/internal/UpwardPlanarityEmbeddedDigraph.h + + + + ogdf/upward/internal/UpwardPlanaritySingleSource.h + + + + ogdf/upward/internal/UpSAT.h + + + + ogdf/upward/UpwardPlanarizerModule.h + + + + ogdf/upward/UpwardEdgeInserterModule.h + + + + ogdf/upward/UpwardPlanarSubgraphSimple.h + + + + ogdf/upward/ExpansionGraph.h + + + + ogdf/upward/VisibilityLayout.h + + + + ogdf/upward/UpwardPlanRep.h + + + + ogdf/upward/DominanceLayout.h + + + + ogdf/upward/FixedEmbeddingUpwardEdgeInserter.h + + + + ogdf/upward/SubgraphUpwardPlanarizer.h + + + + ogdf/upward/UpwardPlanarSubgraphModule.h + + + + ogdf/upward/FUPSSimple.h + + + + ogdf/upward/FUPSModule.h + + + + ogdf/upward/UpwardPlanarizationLayout.h + + + + ogdf/upward/FaceSinkGraph.h + + + + ogdf/upward/LayerBasedUPRLayout.h + + + + ogdf/upward/MaximalFUPS.h + + + + ogdf/upward/UPRLayoutModule.h + + + + ogdf/upward/UpwardPlanarity.h + + + + ogdf/cluster/internal/MaxCPlanarMaster.h + + diff --git a/docs/examples/pitfalls.ipynb b/docs/examples/pitfalls.ipynb new file mode 100644 index 0000000..77a7962 --- /dev/null +++ b/docs/examples/pitfalls.ipynb @@ -0,0 +1,75 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 12, + "metadata": {}, + "outputs": [], + "source": [ + "from ogdf_python import ogdf, cppinclude" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "cppinclude(\"ogdf/layered/SugiyamaLayout.h\")\n", + "cppinclude(\"ogdf/layered/MedianHeuristic.h\")\n", + "cppinclude(\"ogdf/layered/OptimalHierarchyLayout.h\")\n", + "cppinclude(\"ogdf/layered/OptimalRanking.h\")\n", + "\n", + "SL = ogdf.SugiyamaLayout()\n", + "r = ogdf.OptimalRanking()\n", + "r.__python_owns__ = False # ogdf modules take ownership of objects, conflicting with cppyy clean-up\n", + "SL.setRanking(r)\n", + "h = ogdf.MedianHeuristic()\n", + "h.__python_owns__ = False\n", + "SL.setCrossMin(h)\n", + "\n", + "ohl = ogdf.OptimalHierarchyLayout()\n", + "ohl.__python_owns__ = False\n", + "ohl.layerDistance(30.0)\n", + "ohl.nodeDistance(25.0)\n", + "ohl.weightBalancing(0.8)\n", + "SL.setLayout(ohl)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "metadata": {}, + "outputs": [], + "source": [ + "from itertools import count\n", + "for i in count(5):\n", + " CGA = CG = G = None # deletion order is important when overwriting parents of dependant objects\n", + " G = ogdf.Graph()\n", + " CG = ogdf.ClusterGraph(G)\n", + " CGA = ogdf.ClusterGraphAttributes(CG, ogdf.ClusterGraphAttributes.all)" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "ogdf-python", + "language": "python", + "name": "ogdf-python" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.5" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} \ No newline at end of file diff --git a/docs/examples/sugiyama-simple.ipynb b/docs/examples/sugiyama-simple.ipynb new file mode 100644 index 0000000..17a95f5 --- /dev/null +++ b/docs/examples/sugiyama-simple.ipynb @@ -0,0 +1,69 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 4, + "metadata": { + "collapsed": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "env: OGDF_BUILD_DIR=~/ogdf/build-debug\n" + ] + }, + { + "data": { + "text/plain": "", + "text/html": 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+ }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "%env OGDF_BUILD_DIR=~/ogdf/build-debug\n", + "from src.ogdf_python import ogdf, cppinclude\n", + "cppinclude(\"ogdf/basic/graph_generators/randomized.h\")\n", + "cppinclude(\"ogdf/layered/SugiyamaLayout.h\")\n", + "\n", + "G = ogdf.Graph()\n", + "ogdf.setSeed(1)\n", + "ogdf.randomPlanarTriconnectedGraph(G, 20, 40)\n", + "GA = ogdf.GraphAttributes(G, ogdf.GraphAttributes.all)\n", + "\n", + "for n in G.nodes:\n", + " GA.label[n] = \"N%s\" % n.index()\n", + "\n", + "SL = ogdf.SugiyamaLayout()\n", + "SL.call(GA)\n", + "ogdf.GraphIO.drawSVG(GA, \"sugiyama-simple.svg\")\n", + "GA" + ] + } + ], + "metadata": { + "kernelspec": { + "name": "ogdf-python", + "language": "python", + "display_name": "ogdf-python" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 2 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython2", + "version": "2.7.6" + } + }, + "nbformat": 4, + "nbformat_minor": 0 +} \ No newline at end of file diff --git a/docs/examples/sugiyama-simple.svg b/docs/examples/sugiyama-simple.svg new file mode 100644 index 0000000..cb8d16e --- /dev/null +++ b/docs/examples/sugiyama-simple.svg @@ -0,0 +1,245 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + N0 + + + + N1 + + + + N2 + + + + N3 + + + + N7 + + + + N8 + + + + N9 + + + + N10 + + + + N11 + + + + N12 + + + + N13 + + + + N14 + + + + N15 + + + + N16 + + + + N17 + + + + N18 + + + + N19 + + + + N20 + + + + N21 + + + + N22 + + diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..3d4d648 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,37 @@ +[tool.poetry] +name = "ogdf-python" +version = "0.1.0-dev" +description = "Automagic Python Bindings for the Open Graph Drawing Framework written in C++" +authors = ["Simon D. Fink "] +license = "Apache-2.0" +readme = "README.rst" +homepage = "https://ogdf.github.io" +repository = "https://github.com/N-Coder/ogdf-python" +documentation = "https://ogdf-python.readthedocs.io" +keywords = ["ogdf", "graph", "network", "drawing", "algorithm"] +classifiers = [ + 'Development Status :: 3 - Alpha', + 'Intended Audience :: Developers', + 'Intended Audience :: Science/Research', + 'License :: OSI Approved :: Apache Software License', + 'Operating System :: Unix', + 'Programming Language :: C++', + 'Programming Language :: Python :: 3 :: Only', + 'Programming Language :: Python :: 3', + 'Programming Language :: Python :: 3.6', + 'Programming Language :: Python :: 3.7', + 'Programming Language :: Python :: 3.8', + 'Programming Language :: Python', + 'Topic :: Scientific/Engineering :: Information Analysis', + 'Topic :: Scientific/Engineering :: Mathematics', + 'Topic :: Scientific/Engineering :: Visualization', + 'Topic :: Software Development :: Libraries :: Python Modules', +] + +[tool.poetry.dependencies] +python = "^3.6" +cppyy = "^1.8.1" + +[build-system] +requires = ["poetry>=0.12"] +build-backend = "poetry.masonry.api" diff --git a/src/ogdf_python/__init__.py b/src/ogdf_python/__init__.py new file mode 100644 index 0000000..b353fb9 --- /dev/null +++ b/src/ogdf_python/__init__.py @@ -0,0 +1,31 @@ +import os + +import cppyy.ll +from cppyy import include as cppinclude, cppdef, nullptr + +cppyy.ll.set_signals_as_exception(True) +cppyy.add_include_path(os.path.dirname(os.path.realpath(__file__))) + +if "OGDF_INSTALL_DIR" in os.environ: + INSTALL_DIR = os.path.expanduser(os.getenv("OGDF_INSTALL_DIR", "/usr/local")) + cppyy.add_include_path(os.path.join(INSTALL_DIR, "include")) + cppyy.add_library_path(os.path.join(INSTALL_DIR, "lib")) +elif "OGDF_BUILD_DIR" in os.environ: + BUILD_DIR = os.path.expanduser(os.getenv("OGDF_BUILD_DIR", "~/ogdf/build-debug")) + cppyy.add_include_path(os.path.join(BUILD_DIR, "include")) + cppyy.add_include_path(os.path.join(os.path.dirname(BUILD_DIR), "include")) + cppyy.add_library_path(BUILD_DIR) + +cppyy.cppdef("#undef NDEBUG") +cppyy.include("ogdf/basic/internal/config_autogen.h") +cppyy.include("ogdf/basic/internal/config.h") +cppyy.include("ogdf/basic/Graph.h") +cppyy.include("ogdf/fileformats/GraphIO.h") + +cppyy.load_library("libOGDF.so") + +import ogdf_python.pythonize +from cppyy.gbl import ogdf + +__all__ = ["ogdf", "cppinclude", "cppdef", "nullptr"] +__keep_imports = [cppyy, ogdf_python.pythonize, ogdf, cppinclude, cppdef, nullptr] diff --git a/src/ogdf_python/pythonize.py b/src/ogdf_python/pythonize.py new file mode 100644 index 0000000..5eb00c5 --- /dev/null +++ b/src/ogdf_python/pythonize.py @@ -0,0 +1,193 @@ +import functools +import re +import tempfile + +import cppyy + + +class GraphAttributesProxy(object): + def __init__(self, GA, getter, setter): + self.GA = GA + self.getter = getter + self.setter = setter + + def __setitem__(self, key, item): + return self.setter(self.GA, key, item) + + def __getitem__(self, key): + return self.getter(self.GA, key) + + def __call__(self, key): + return self.getter(self.GA, key) + + +class GraphAttributesDescriptor(object): + def __init__(self, getter, setter): + self.getter = getter + self.setter = setter + + def __get__(self, obj, type=None): + return GraphAttributesProxy(obj, self.getter, self.setter) + + +GA_FIELDS = [ + ("x", "ogdf::node", "double"), + ("y", "ogdf::node", "double"), + ("z", "ogdf::node", "double"), + ("xLabel", "ogdf::node", "double"), + ("yLabel", "ogdf::node", "double"), + ("zLabel", "ogdf::node", "double"), + ("width", "ogdf::node", "double"), + ("height", "ogdf::node", "double"), + ("shape", "ogdf::node", "ogdf::Shape"), + ("strokeType", "ogdf::node", "ogdf::StrokeType"), + ("strokeColor", "ogdf::node", "const ogdf::Color &"), + ("strokeWidth", "ogdf::node", "float"), + ("fillPattern", "ogdf::node", "ogdf::FillPattern"), + ("fillColor", "ogdf::node", "const ogdf::Color &"), + ("fillBgColor", "ogdf::node", "const ogdf::Color &"), + ("label", "ogdf::node", "const std::string &"), + ("templateNode", "ogdf::node", "const std::string &"), + ("weight", "ogdf::node", "int"), + ("type", "ogdf::node", "ogdf::Graph::NodeType"), + ("idNode", "ogdf::node", "int"), + ("bends", "ogdf::edge", "const ogdf::DPolyline &"), + ("arrowType", "ogdf::edge", "ogdf::EdgeArrow"), + ("strokeType", "ogdf::edge", "ogdf::StrokeType"), + ("strokeColor", "ogdf::edge", "const ogdf::Color &"), + ("strokeWidth", "ogdf::edge", "float"), + ("label", "ogdf::edge", "const std::string &"), + ("intWeight", "ogdf::edge", "int"), + ("doubleWeight", "ogdf::edge", "double"), + ("type", "ogdf::edge", "ogdf::Graph::EdgeType"), + ("subGraphBits", "ogdf::edge", "uint32_t"), +] +CGA_FIELDS = [ + ("x", "ogdf::cluster", "double"), + ("y", "ogdf::cluster", "double"), + ("width", "ogdf::cluster", "double"), + ("height", "ogdf::cluster", "double"), + ("label", "ogdf::cluster", "const std::string &"), + ("strokeType", "ogdf::cluster", "ogdf::StrokeType"), + ("strokeColor", "ogdf::cluster", "const ogdf::Color &"), + ("strokeWidth", "ogdf::cluster", "float"), + ("fillPattern", "ogdf::cluster", "ogdf::FillPattern"), + ("fillColor", "ogdf::cluster", "const ogdf::Color &"), + ("fillBgColor", "ogdf::cluster", "const ogdf::Color &"), + ("templateCluster", "ogdf::cluster", "const std::string &"), +] +GA_FIELD_NAMES = set(t[0] for t in GA_FIELDS) +CGA_FIELD_NAMES = set(t[0] for t in GA_FIELDS + CGA_FIELDS) + + +def generate_GA_setters(): + DEFS = """ +#include +#include + +namespace ogdf_pythonization { + void GraphAttributes_set_directed(ogdf::GraphAttributes &GA, bool v) { GA.directed() = v; }""" + for name, obj, val in GA_FIELDS: + DEFS += ("\n\tvoid GraphAttributes_set_{name}(ogdf::GraphAttributes &GA, {obj} o, {val} v) " + "{{ GA.{name}(o) = v; }}\n".format(name=name, obj=obj, val=val)) + for name, obj, val in CGA_FIELDS: + DEFS += ("\n\tvoid GraphAttributes_set_{name}(ogdf::ClusterGraphAttributes &GA, {obj} o, {val} v) " + "{{ GA.{name}(o) = v; }}\n".format(name=name, obj=obj, val=val)) + cppyy.cppdef(DEFS + "};") + + +SVGConf = None + + +def GraphAttributes_to_html(self): + global SVGConf + if SVGConf == None: + SVGConf = cppyy.gbl.ogdf.GraphIO.SVGSettings() + SVGConf.margin(50) + SVGConf.bezierInterpolation(True) + SVGConf.curviness(0.3) + with tempfile.NamedTemporaryFile("w+t", suffix=".svg", prefix="ogdf-python-") as f: + # os = cppyy.gbl.std.ofstream(f.name) + # cppyy.bind_object(cppyy.addressof(os), "std::basic_ostream") + cppyy.gbl.ogdf.GraphIO.drawSVG(self, f.name, SVGConf) + # os.close() + return f.read() + + +def replace_GraphAttributes(klass, name): + if not name.endswith("GraphAttributes"): return + klass.directed = property(klass.directed, cppyy.gbl.ogdf_pythonization.GraphAttributes_set_directed) + for field in (CGA_FIELD_NAMES if name.startswith("Cluster") else GA_FIELD_NAMES): + setattr(klass, field, GraphAttributesDescriptor( + getattr(klass, field), + getattr(cppyy.gbl.ogdf_pythonization, "GraphAttributes_set_%s" % field) + )) + klass._repr_html_ = GraphAttributes_to_html + + +generate_GA_setters() +replace_GraphAttributes(cppyy.gbl.ogdf.GraphAttributes, "GraphAttributes") +replace_GraphAttributes(cppyy.gbl.ogdf.ClusterGraphAttributes, "ClusterGraphAttributes") + +cppyy.gbl.ogdf.Graph._repr_html_ = GraphAttributes_to_html # TODO layout +cppyy.gbl.ogdf.ClusterGraph._repr_html_ = GraphAttributes_to_html + + +def GraphObjectContainer_getitem(self, idx): + for e in self: + if e.index() == idx: + return e + raise IndexError() + + +def pythonize_ogdf_internal(klass, name): + if name.startswith("GraphObjectContainer"): + klass.__getitem__ = GraphObjectContainer_getitem + + +cppyy.py.add_pythonization(pythonize_ogdf_internal, "ogdf::internal") + + +class StreamToStr(object): + def __init__(self, klass): + self.klass = klass + self.old_str = klass.__str__ + + def __get__(self, obj, type=None): + @functools.wraps(self.old_str) + def to_str(): + try: + return cppyy.gbl.ogdf_pythonization.to_string(obj) + except TypeError as e: + print(e) + return self.old_str(obj) + + return to_str + + +def generic_getitem(self, idx): + # TODO more efficient implementation for random-access, reverse iteration + for i, e in enumerate(self): + if i == idx: + return e + raise IndexError() + + +def pythonize_ogdf(klass, name): + if not isinstance(klass.__str__, StreamToStr): + klass.__str__ = StreamToStr(klass) + if re.match("List(Const)?(Reverse)?Iterator(Base)?(<.+>)?", name): + def advance(self): + if not self.valid(): + raise StopIteration() + val = self.__deref__() + self.__preinc__() + return val + + klass.__next__ = advance + if re.match("S?List(Pure)?", name): + klass.__getitem__ = generic_getitem + # TODO setitem? + + +cppyy.py.add_pythonization(pythonize_ogdf, "ogdf")