diff.yml

name: 'Create ROBOT diffs on Pull requests'

on: 

  issue_comment:
        types: [created]

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  diff-reports:
    if: ${{ github.event.issue.pull_request }}
    runs-on: macos-latest
    permissions:
      contents: read
      pull-requests: read
    steps:
      - uses: khan/pull-request-comment-trigger@v1.1.0
        id: check
        with:
          trigger: '#gogoeditdiff'
        env:
          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
      - uses: docker-practice/actions-setup-docker@master
        if: steps.check.outputs.triggered == 'true'
      - run: |
          set -x
          docker version
        if: steps.check.outputs.triggered == 'true'
      - name: Install ODK
        run: docker pull obolibrary/odklite
        if: steps.check.outputs.triggered == 'true'
      # Checks-out current branch
      - uses: xt0rted/pull-request-comment-branch@v1
        id: comment-branch
      - uses: actions/checkout@v3
        if: steps.check.outputs.triggered == 'true'
        with:
          ref: ${{ steps.comment-branch.outputs.head_ref }}
      # Checks-out master branch under "master" directory
      - uses: actions/checkout@v3
        if: steps.check.outputs.triggered == 'true'
        with:
          ref: master
          path: master
      - name: Diff classification
        if: steps.check.outputs.triggered == 'true'
        run: |
          cd src/ontology
          docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx9G' -e JAVA_OPTS='-Xmx9G' --rm obolibrary/odklite robot diff --left ../../master/src/ontology/uberon-edit.obo --left-catalog ../../master/src/ontology/catalog-v001.xml --right uberon-edit.obo --right-catalog catalog-v001.xml -f markdown -o edit-diff.md
      - name: Upload diff
        if: steps.check.outputs.triggered == 'true'
        uses: actions/upload-artifact@v3
        with:
          name: edit-diff.md
          path: src/ontology/edit-diff.md
      - name: Make step for branch
        if: steps.check.outputs.triggered == 'true'
        run: cd src/ontology && mkdir -p tmp reports mirror && docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx9G' -e JAVA_OPTS='-Xmx9G' --rm obolibrary/odklite make BRI=false MIR=false PAT=false IMP=false uberon-simple.owl > TESTLOG.log
      - name: Make step for master
        if: steps.check.outputs.triggered == 'true'
        run: cd master/src/ontology && mkdir -p tmp reports mirror && docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx9G' -e JAVA_OPTS='-Xmx9G' --rm obolibrary/odklite make BRI=false MIR=false PAT=false IMP=false uberon-simple.owl > TESTLOG.log
      - name: Diff report
        if: steps.check.outputs.triggered == 'true'
        run: |
          cd src/ontology
          docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx9G' -e JAVA_OPTS='-Xmx9G' --rm obolibrary/odklite robot diff --left ../../master/src/ontology/uberon-simple.owl --left-catalog catalog-v001.xml --right uberon-simple.owl --right-catalog ../../master/src/ontology/catalog-v001.xml -f markdown -o simple-report.md
      - name: Upload diff
        if: steps.check.outputs.triggered == 'true'
        uses: actions/upload-artifact@v3
        with:
          name: simple-report.md
          path: src/ontology/simple-report.md
  post_comment:
    needs: [diff-reports]
    runs-on: ubuntu-latest
    steps:
      - uses: khan/pull-request-comment-trigger@v1.1.0
        id: check
        with:
          trigger: '#gogoeditdiff'
        env:
          GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
      - uses: actions/checkout@v3
        if: steps.check.outputs.triggered == 'true'
      - name: Download reasoned diff
        if: steps.check.outputs.triggered == 'true'
        uses: actions/download-artifact@v3
        with:
          name: simple-report.md
      - name: Prepare reasoned comment
        run: "echo \"<details>\n <summary> Here's a diff of how these changes impact the classified ontology (on -simple file): </summary> \n\" > comment.md; cat simple-report.md >> comment.md"
        if: steps.check.outputs.triggered == 'true'
      - name: Post reasoned comment
        if: steps.check.outputs.triggered == 'true'
        env:
          GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
        uses: NejcZdovc/comment-pr@v1.1.1
        with:
          file: "../../comment.md"
          identifier: "REASONED"
      - uses: actions/checkout@v3
        if: steps.check.outputs.triggered == 'true'
      - name: Download edit diff
        if: steps.check.outputs.triggered == 'true'
        uses: actions/download-artifact@v2
        with:
          name: edit-diff.md
      - name: Prepare edit file comment
        run: "echo \"<details>\n <summary> Here's a diff of your edit file (unreasoned) </summary> \n\" > edit-comment.md; cat edit-diff.md >> edit-comment.md"
        if: steps.check.outputs.triggered == 'true'
      - name: Post comment
        if: steps.check.outputs.triggered == 'true'
        env:
          GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
        uses: NejcZdovc/comment-pr@v1.1.1
        with:
          file: "../../edit-comment.md"
          identifier: "UNREASONED"