Update requirements.txt (#377) #473
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit Test nmma | |
| on: | |
| push: | |
| branches: [main] | |
| paths-ignore: | |
| - "doc/**" | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - "doc/**" | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Checkout branch being tested | |
| uses: actions/checkout@v4 | |
| - name: Set up Python with Conda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.os == 'macos-latest' && 'arm64' || 'x86_64' }} | |
| miniforge-version: latest | |
| use-mamba: true | |
| mamba-version: "*" | |
| activate-environment: nmma_env | |
| - name: Restore SVD models from cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: svdmodels | |
| key: svdmodels-${{ hashFiles('**/LICENSE') }} | |
| restore-keys: svdmodels- | |
| save-always: true | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: pip cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip-2- | |
| save-always: true | |
| - name: Update Homebrew | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| brew update --preinstall | |
| - name: Configure Homebrew cache | |
| if: matrix.os == 'macos-latest' | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/Library/Caches/Homebrew/openmpi--* | |
| ~/Library/Caches/Homebrew/downloads/*--openmpi-* | |
| ~/Library/Caches/Homebrew/hdf5--* | |
| ~/Library/Caches/Homebrew/downloads/*--hdf5-* | |
| ~/Library/Caches/Homebrew/gcc--* | |
| ~/Library/Caches/Homebrew/downloads/*--gcc-* | |
| ~/Library/Caches/Homebrew/openblas--* | |
| ~/Library/Caches/Homebrew/downloads/*--openblas-* | |
| ~/Library/Caches/Homebrew/lapack--* | |
| ~/Library/Caches/Homebrew/downloads/*--lapack-* | |
| ~/Library/Caches/Homebrew/basictex--* | |
| ~/Library/Caches/Homebrew/downloads/*--basictex-* | |
| ~/Library/Caches/Homebrew/cmake--* | |
| ~/Library/Caches/Homebrew/downloads/*--cmake-* | |
| key: brew-${{ hashFiles('**/pyproject.toml') }} | |
| restore-keys: brew- | |
| save-always: true | |
| - name: Install Homebrew dependencies | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| env HOMEBREW_NO_AUTO_UPDATE=1 brew install openmpi hdf5 gcc openblas lapack basictex cmake | |
| eval "$(/usr/libexec/path_helper)" | |
| sudo tlmgr update --self | |
| sudo tlmgr install collection-latex | |
| sudo tlmgr install collection-fontsrecommended | |
| sudo tlmgr install dvipng | |
| sudo tlmgr install cm-super | |
| sudo tlmgr install type1cm | |
| - name: Install Linux Dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: openmpi-bin libopenmpi-dev gfortran build-essential libblas3 libblas-dev liblapack3 liblapack-dev libatlas-base-dev texlive texlive-latex-extra texlive-fonts-recommended dvipng cm-super | |
| execute_install_scripts: true | |
| - name: Install dependencies (macOS) | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| conda install -c conda-forge pyfftw c-compiler ligo-segments python-ligo-lw | |
| echo "FC=$(which gfortran-11)" >> $GITHUB_ENV | |
| echo "CC=$(which gcc)" >> $GITHUB_ENV | |
| echo "CXX=$(which g++)" >> $GITHUB_ENV | |
| - name: Install dependencies (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y texlive texlive-latex-extra texlive-fonts-recommended dvipng cm-super | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade git+https://github.com/bitranox/wrapt_timeout_decorator.git | |
| python -m pip install pytest pytest-cov flake8 pytest-aiohttp sqlparse freezegun PyJWT joblib coveralls | |
| python -m pip install -r ml_requirements.txt -r grb_requirements.txt -r tf_requirements.txt -r sklearn_requirements.txt | |
| python -m pip install . | |
| git clone https://github.com/JohannesBuchner/MultiNest && cd MultiNest/build && rm -rf * && cmake .. && make && cd ../.. | |
| pwd | |
| - name: Export Libraries | |
| run: | | |
| echo "LD_LIBRARY_PATH=$HOME/work/nmma/nmma/MultiNest/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "DYLD_LIBRARY_PATH=$HOME/work/nmma/nmma/MultiNest/lib:$DYLD_LIBRARY_PATH" >> $GITHUB_ENV | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude docs | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude docs,versioneer.py,nmma/_version.py,nmma/tests,nmma/*/__init__.py | |
| - name: Test with pytest | |
| run: | | |
| python -m coverage run --source nmma -m pytest nmma/tests/*.py | |
| - name: Run Coveralls | |
| if: ${{ success() }} | |
| run: | | |
| coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |