From d0e08f61b1c43762b743e98710ca5d0983dc4d2e Mon Sep 17 00:00:00 2001 From: noriakis Date: Sat, 9 Dec 2023 13:12:04 +0900 Subject: [PATCH] exportInteractive --- R/exportInteractive.R | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/R/exportInteractive.R b/R/exportInteractive.R index 965c8ad..aec4ec9 100644 --- a/R/exportInteractive.R +++ b/R/exportInteractive.R @@ -1,13 +1,14 @@ #' exportInteractive #' -#' @param stana stana object +#' export the current stana object to interactive application +#' for the convenient analysis and visualization +#' +#' @param stana stana object of type MIDAS2 #' @param out output directory -#' export the stana results for the inspection in interactive -#' application #' @param db db used to profile 'uhgg' or 'gtdb' #' @param calcko calculate KO abundance #' @param calctree calculate consensus tree -#' @param species calk +#' @param species candidate species, default to all the species #' @export #' @return output the results to specified directory exportInteractive <- function(stana, out=".", db="uhgg", calcko=TRUE,