Docker Image

.github/workflows/hello.yml

@@ -1,21 +1,29 @@
-name: CI/CD run
+name: Build and Push Docker Image
+
 on:
   push:
-    branches: ["main"]
-  pull_request:
-    branches: ["main"]
-  workflow_dispatch:
+    branches:
+      - main
 
 jobs:
   build:
     runs-on: ubuntu-latest
+
     steps:
-      - uses: actions/checkout@v3
-      - name: install packages
-        run: make install
-      - name: lint
-        run: make lint
-      - name: test
-        run: make test
-      - name: format
-        run: make format
+    - name: Checkout repository
+      uses: actions/checkout@v2
+
+    - name: Log in to Docker Hub
+      uses: docker/login-action@v1
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_PASSWORD }}
+
+    - name: Build Docker image
+      run: make build
+
+    - name: Push Docker image
+      run: make push
+      env:
+        DOCKER_ID_USER: ${{ secrets.DOCKER_USERNAME }}
+        IMAGE_NAME: dashboard_demo

.gitignore

@@ -1 +1,138 @@
-__pycache__/
+#ignore huggingface
+summarizeApp
+#ignore fine-tuning
+test_trainer/
+
+#ignore pytorch artifacts
+data
+model.pth
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

Data_summary.md

@@ -0,0 +1,27 @@
+### Describe Log GDP per capita (constant 2010 US$):
+| Statistics | Value |
+| ----- | ----- |
+| count | 198.00 |
+| mean | 8.70 |
+| std | 1.47 |
+| min | 5.43 |
+| 25% | 7.52 |
+| 50% | 8.72 |
+| 75% | 9.78 |
+| max | 12.15 |
+
+
+### Describe Mortality rate, infant (per 1,000 live births):
+| Statistics | Value |
+| ----- | ----- |
+| count | 193.00 |
+| mean | 23.40 |
+| std | 21.06 |
+| min | 1.70 |
+| 25% | 6.50 |
+| 50% | 15.50 |
+| 75% | 35.10 |
+| max | 91.60 |
+
+
+![scatter_plot](static/images/plot.png)

Dockerfile

@@ -0,0 +1,32 @@
+# Use the official Python image from the Docker Hub
+FROM python:3.9-slim
+
+# Set the working directory in the container
+# this allows for any subsequent commands to be run from this directory
+WORKDIR /app
+
+# Copy the current directory contents into the container at /app
+# . indicates the directory where the Dockerfile is located and copies all 
+# files in that directory into our container working directory
+COPY . /app
+
+# Install any needed packages specified in requirements.txt
+# using --no-cache-dir to not cache the packages and save space
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Make port 5000 available to the world outside this container
+EXPOSE 5000
+
+# Define environment variable
+# FLASK_APP is a framework specific environmnent variable that tells
+# the flask command where the application is located
+
+#without this the flask run command will not know what app to run.
+ENV FLASK_APP=app.py
+
+# Run app.py when the container launches
+# 0.0.0.0 sets the application to listen on all network interfaces
+
+#a more secure option would be to specify the exact IP you plan to use 
+# (e.g.API gateway interface)
+CMD ["flask", "run", "--host=0.0.0.0"]

Makefile

@@ -1,13 +1,29 @@
-install:
-	pip install --upgrade pip && pip install -r requirements.txt
+# Define the image name
+IMAGE_NAME = dashboard_demo
+DOCKER_ID_USER = diego41
 
-format:
-	black *.py
+# Build the Docker image
+build:
+	docker build -t $(IMAGE_NAME) .
 
-lint:
-	pylint --disable =R,C --ignore-patterns=test_.*?py *.py
+# Run the Docker container
+run:
+	docker run -p 5000:7000 $(IMAGE_NAME)
 
-test:
-	python -m pytest -cov=main test_main.py
+# Remove the Docker image
+clean:
+	docker rmi $(IMAGE_NAME)
 
-all: install format lint test
+image_show:
+	docker images
+
+container_show:
+	docker ps
+
+push:
+	docker login
+	docker tag $(IMAGE_NAME) $(DOCKER_ID_USER)/$(IMAGE_NAME)
+	docker push $(DOCKER_ID_USER)/$(IMAGE_NAME):latest
+
+login:
+	docker login -u ${DOCKER_ID_USER}

app.py

@@ -0,0 +1,76 @@
+from flask import Flask, render_template, request, redirect, url_for
+import os
+import pandas as pd
+from mylib.lib import (
+    log_func,
+    scatter_plot,
+    generate_general_markdown,
+    summary_statistics,
+)
+
+# from dotenv import load_dotenv
+import os
+
+app = Flask(__name__)
+
+UPLOAD_FOLDER = "uploads"
+PLOT_FOLDER = "static/images"
+app.config["UPLOAD_FOLDER"] = UPLOAD_FOLDER
+app.config["PLOT_FOLDER"] = PLOT_FOLDER
+
+
+@app.route("/", methods=["GET", "POST"])
+def input_page():
+    if request.method == "POST":
+        # Handle file upload and form inputs
+        file = request.files["file"]
+        x = request.form["x"]
+        y = request.form["y"]
+        title = request.form["title"]
+
+        # Save uploaded file
+        file_path = os.path.join(app.config["UPLOAD_FOLDER"], file.filename)
+        file.save(file_path)
+
+        # Redirect to dashboard with parameters
+        return redirect(
+            url_for("dashboard", file_path=file_path, x=x, y=y, title=title)
+        )
+
+    return render_template("input_page.html")
+
+
+@app.route("/dashboard")
+def dashboard():
+    # Get parameters from URL
+    file_path = request.args.get("file_path")
+    x = request.args.get("x")
+    y = request.args.get("y")
+    title = request.args.get("title")
+
+    # Read data and process
+    df = pd.read_csv(file_path)
+    df = log_func(df, x)
+
+    # Generate plot
+    plot_path = os.path.join(app.config["PLOT_FOLDER"], "plot.png")
+    scatter_plot(df, x, y, title, "plot.png")
+
+    # Generate summary statistics
+    summary_x = summary_statistics(df, x).to_dict().items()
+    summary_y = summary_statistics(df, y).to_dict().items()
+
+    return render_template(
+        "dashboard.html",
+        plot_path=plot_path,
+        summary_x=summary_x,
+        summary_y=summary_y,
+        x=x,
+        y=y,
+    )
+
+
+if __name__ == "__main__":
+    os.makedirs(UPLOAD_FOLDER, exist_ok=True)
+    os.makedirs(PLOT_FOLDER, exist_ok=True)
+    app.run(host="0.0.0.0", port=5000)