Leaf Age Response function for all Biogenic VOCs consistent with MEGAN #744
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| name: CI | |
| on: | |
| push: | |
| branches: [main, develop] | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| name: Build and test | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| compiler: [gfortran-9, gfortran-10, gfortran-11] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev | |
| - name: Set up Python (micromamba) | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-file: python/environment.yml | |
| cache-env: true | |
| extra-specs: | | |
| python=3.10 | |
| - name: Check that default input is nc | |
| run: | | |
| f90nml -g filenames -v file_vars="'input/gfs.t12z.20220701.sfcf000.canopy.nc'" \ | |
| input/namelist.canopy input/namelist.canopy | |
| f90nml -g userdefs -v ntime=1 \ | |
| input/namelist.canopy input/namelist.canopy | |
| python -c ' | |
| import f90nml | |
| with open("input/namelist.canopy") as f: | |
| nml = f90nml.read(f) | |
| assert nml["filenames"]["file_vars"].endswith((".nc", ".ncf")), "nc input by default, like build" | |
| assert nml["userdefs"]["infmt_opt"] == 0, "necessary to read 2-D" | |
| ' | |
| - name: Debug compile and run | |
| run: | | |
| make -C src clean | |
| make -C src | |
| ./canopy | |
| env: | |
| DEBUG: 1 | |
| FC: ${{ matrix.compiler }} | |
| - name: Run Python module as script | |
| run: | | |
| cd python | |
| python canopy_app.py | |
| cd - | |
| - name: Run Python example nbs | |
| run: | | |
| cd python | |
| for f in *.ipynb; do | |
| jupyter nbconvert --to notebook --execute $f | |
| done | |
| cd - | |
| - name: Non-debug compile and run | |
| run: | | |
| make -C src clean | |
| make -C src | |
| ./canopy | |
| env: | |
| DEBUG: 0 | |
| FC: ${{ matrix.compiler }} | |
| - name: Non-NetCDF compile and run | |
| run: | | |
| make -C src clean | |
| make -C src | |
| f90nml -g filenames -v file_vars="'input/gfs.t12z.20220701.sfcf000.canopy.txt'" \ | |
| input/namelist.canopy input/namelist.canopy | |
| f90nml -g userdefs -v infmt_opt=1 \ | |
| input/namelist.canopy input/namelist.canopy | |
| ./canopy | |
| env: | |
| DEBUG: 0 | |
| FC: ${{ matrix.compiler }} | |
| NETCDF: 0 |