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DESCRIPTION
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DESCRIPTION
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Package: IHW
Title: Independent Hypothesis Weighting
Version: 1.29.0
Authors@R: c(person("Nikos", "Ignatiadis", email = "nikos.ignatiadis01@gmail.com", role = c("aut", "cre")),
person("Wolfgang", "Huber", role = "aut"))
Description: Independent hypothesis weighting (IHW) is a multiple testing
procedure that increases power compared to the method of Benjamini and Hochberg by assigning
data-driven weights to each hypothesis. The input to IHW is a two-column
table of p-values and covariates. The covariate can be any continuous-valued
or categorical variable that is thought to be informative on the statistical
properties of each hypothesis test, while it is independent of the p-value under
the null hypothesis.
Depends:
R (>= 3.3.0)
License: Artistic-2.0
LazyData: true
Imports:
methods,
slam,
lpsymphony,
fdrtool,
BiocGenerics
Suggests:
ggplot2,
dplyr,
gridExtra,
scales,
DESeq2,
airway,
testthat,
Matrix,
BiocStyle,
knitr,
rmarkdown,
devtools
VignetteBuilder: knitr
biocViews: ImmunoOncology,
MultipleComparison,
RNASeq
RoxygenNote: 7.1.1