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--skip_qualimap parameter to disable qualimap #367

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adamrtalbot opened this issue Jan 3, 2024 · 0 comments · Fixed by #471
Closed

--skip_qualimap parameter to disable qualimap #367

adamrtalbot opened this issue Jan 3, 2024 · 0 comments · Fixed by #471
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enhancement New feature or request
Milestone
2.8.0

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Description of feature

Qualimap has notoriously high memory usage, which means when analysing ultra-high depth samples it can run out of memory and bring the entire pipeline down. We should add a a --skip_qualimap option to enable a user to disable qualimap.
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enhancement New feature or request
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2.8.0
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run_qualimap param and skip qualimap/bamqc by default nf-core/methylseq
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@adamrtalbot @sateeshperi