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A few modules.config things #210

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erikrikarddaniel opened this issue Nov 14, 2023 · 1 comment
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A few modules.config things #210

erikrikarddaniel opened this issue Nov 14, 2023 · 1 comment
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enhancement New feature or request

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@erikrikarddaniel
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erikrikarddaniel commented Nov 14, 2023

Description of feature

We might want to include something like the below in conf/modules.config:

(I'm not totally sure about the BBDUK part, but the files can be incredibly large.)

  withName: BBMAP_BBDUK {
    publishDir = [
      pattern: '*.fastq.gz',
      enabled: false
    ]
  }
  withName: ".*SAMTOOLS.*" {
    publishDir = [
      [
        pattern: "*.bam",
        enabled: false
      ],
      [
        pattern: "*.bam.bai",
        enabled: false
      ]
    ]
  }
  withName: 'UNPIGZ_GFF' {
    publishDir = [
      enabled: true
    ]
  }
@erikrikarddaniel erikrikarddaniel added the enhancement New feature or request label Nov 14, 2023
@erikrikarddaniel erikrikarddaniel added this to the nf-core candidate milestone Nov 22, 2023
@erikrikarddaniel erikrikarddaniel self-assigned this Nov 22, 2023
@erikrikarddaniel
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Fixed in #212

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