diff --git a/CITATIONS.md b/CITATIONS.md index 7805cb0a..977bca0a 100644 --- a/CITATIONS.md +++ b/CITATIONS.md @@ -45,7 +45,7 @@ - [Prodigal](https://github.com/hyattpd/Prodigal) -- [BBmap] (https://sourceforge.net/projects/bbmap/) +- [BBmap](https://sourceforge.net/projects/bbmap/) - [FeatureCounts](https://subread.sourceforge.net) @@ -73,8 +73,12 @@ - [EUKulele](https://github.com/AlexanderLabWHOI/EUKulele) - [CAT](https://github.com/dutilh/CAT) + > von Meijenfeldt FAB, Arkhipova K, Cambuy DD, Coutinho FH, Dutilh BE. Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT. Genome Biology. 2019;20:217. +- [transrate](https://hibberdlab.com/transrate/) + > TransRate: reference free quality assessment of de-novo transcriptome assemblies (2016). Richard D Smith-Unna, Chris Boursnell, Rob Patro, Julian M Hibberd, Steven Kelly. Genome Research doi: [http://dx.doi.org/10.1101/gr.196469.115](http://dx.doi.org/10.1101/gr.196469.115) + ## Software packaging/containerisation tools - [Anaconda](https://anaconda.com)