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Document how to segment a folder #78

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jcohenadad opened this issue Oct 22, 2024 · 0 comments
Open

Document how to segment a folder #78

jcohenadad opened this issue Oct 22, 2024 · 0 comments
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@jcohenadad
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There is currently no documentation about how to use the tool. In order to provide feedback to the dev team, a minimalist documentation is required. Below is an example scenario for which a documentation would be a good starting point:

  • Select a folder that has BIDS-organize data
  • At the root, there is a folder /derivatives/labels, that contains labels for some subjects.
  • The data of interest have the suffix _T1w.nii.gz and the labels of interest (the existing ones, and those to create from scratch) have the suffix _T1w_label-SC_seg.nii.gz
  • Select a value to assign to the label (eg: 1)
  • Start the segmentation in a few subjects
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