Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to specify what segmentation is associated with an image? #64

Open
jcohenadad opened this issue Sep 18, 2024 · 1 comment
Open

How to specify what segmentation is associated with an image? #64

jcohenadad opened this issue Sep 18, 2024 · 1 comment
Assignees
Labels
BUG Something isn't working enhancement New feature or request help wanted Extra attention is needed priority high To manage as soon as possible. Anything within the big picture, not nit-picky.

Comments

@jcohenadad
Copy link
Member

jcohenadad commented Sep 18, 2024

From version: eef16bc

After loading a folder (checked no BIDS), I'm seeing the list of NIfTi images:

image

But at this point, what is unclear to me is:

  • how can I associate the existing segmentation (that are located under the derivatives folder) with each image?
  • for new segmentation, how can I specify their file name upon saving?

There is a path that is shown below the 'interpolate' button:

image

What does this path correspond to? If it is the segmentation, I suggest adding a clear title above that path to indicate what this is. Also, if it is the segmentation, then what is the logic to retrieve that file name? I see it is under derivatives, but nowhere in the config I specified that path:

image

Also, more problematic: that file name refers to the wrong segmentation (the subject name does not match between the image and the seg).

@AcastaPaloma AcastaPaloma self-assigned this Oct 16, 2024
@AcastaPaloma
Copy link
Collaborator

AcastaPaloma commented Oct 16, 2024

I don't think that I am able to replicate the problem of names not matching:
image
Is it possible to provide the steps to reach that bug?

@jcohenadad

@AcastaPaloma AcastaPaloma added the priority high To manage as soon as possible. Anything within the big picture, not nit-picky. label Oct 20, 2024
@maxradx maxradx added BUG Something isn't working enhancement New feature or request help wanted Extra attention is needed labels Oct 31, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
BUG Something isn't working enhancement New feature or request help wanted Extra attention is needed priority high To manage as soon as possible. Anything within the big picture, not nit-picky.
Projects
None yet
Development

No branches or pull requests

3 participants