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The same thing happens to me, but it's actually processing all the files. It's probably something with the progress bar (always with the last 20 files).
Issue Description
I run the following command which finished successfully but the log says it merged 53 out of 73 files (73%).
pod5 merge -t 32 pod5/*.pod5 -o pod5merged/PAQ83015_bd9104da_d74a1b29.pod5
Logs
Merging reads from 73 files
Merging: 73%|#######2 | 53/73 [18:12<06:52, 20.61s/File]
Specifications
The text was updated successfully, but these errors were encountered: