test boh

mspodda · May 22, 2024 · c156c7b · c156c7b
1 parent 69f7657
commit c156c7b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml
@@ -32,6 +32,6 @@ jobs:
            wget -O test_data/gencode.v46.primary_assembly.basic.annotation.gtf.gz  https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_46/gencode.v46.primary_assembly.basic.annotation.gtf.gz 
            wget -O test_data/GRCh38.primary_assembly.genome.fa.gz https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_46/GRCh38.primary_assembly.genome.fa.gz 
       - name: Run snakemake
-        run: snakemake -s workflow/snakefile_final.smk --use-conda --rerun-incomplete --core 2 -k -np
+        run: snakemake -s workflow/snakefile_final.smk --use-conda --rerun-incomplete --core 2 -k
 
 
diff --git a/workflow/util/script.sh b/workflow/util/script.sh
@@ -1,2 +1,2 @@
-cd [../../results ]$1
+cd ../../results/$1
 ffq --ftp $1 | grep -Eo '"url": "[^"]*"' | grep -o ftp.sra.*$ | sed 's/.$//' | xargs wget -q -c