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Update README.md
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mspodda authored May 24, 2024
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Expand Up @@ -65,7 +65,7 @@ git clone https://github.com/ctglab/isoworm

### Usage

Edit `config.yml` to set the input datasets and parameters, edit `config.R` to set the input datasets and parameters for R and edit `script.sh` with the directory where download your fastq, then issue:
Edit `config.yml` to set the input datasets and parameters, edit `config.R` to set the input datasets and parameters for R and edit `script.sh` with the directory where you want to download your fastqs, then issue:
```bash
snakemake -s snakefile_final.smk --use-conda --rerun-incomplete --core 2 -k
```

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