From c37e159955600b14f489a4bc2a3f3274dba9f85b Mon Sep 17 00:00:00 2001 From: darrelln32 Date: Sun, 17 Nov 2024 22:37:28 -0500 Subject: [PATCH] Update LaunchMetrics.py to process the genome Synthetic on DRAGEN --- scripts/LaunchMetrics.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/LaunchMetrics.py b/scripts/LaunchMetrics.py index 24d6f27..82e5770 100644 --- a/scripts/LaunchMetrics.py +++ b/scripts/LaunchMetrics.py @@ -80,7 +80,7 @@ def launch_metrics(self, all_samples, run, project_directory): self.dragen_rna_alignment_and_metrics(sample, run, sample_parameters, rna_directory, work_directory, fastq_list) continue # check to see if we need to run the samples on dragen - if any(s in sample.recipe for s in RUN_ON_DRAGEN): + if any(s in sample.recipe for s in RUN_ON_DRAGEN) or (sample.genome == "Synthetic"): pathlib.Path(dragen_directory).mkdir(parents = True, exist_ok = True) self.dragen(sample, run, sample_parameters, work_directory, dragen_directory, fastq_list) continue