From 5d8ca378119b17d17590c6175d2b5205e0560721 Mon Sep 17 00:00:00 2001 From: luc Date: Wed, 14 Aug 2024 16:29:24 -0400 Subject: [PATCH] add ORION for dlp yaml file generation --- demux_run_dag.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/demux_run_dag.py b/demux_run_dag.py index ee8dce3..129cd67 100644 --- a/demux_run_dag.py +++ b/demux_run_dag.py @@ -159,7 +159,7 @@ def stats(ds, **kwargs): fld_file = Path(fld_file_path) response = requests.get(fld_endpoint, auth = ("pms", "tiagostarbuckslightbike"), verify = False) fld_file.write_bytes(response.content) - if "FAUCI" in sequencer_and_run: + if "FAUCI" in sequencer_and_run or "ORION" in sequencer_and_run: python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + fld_file_path + " " + project + " " + output_yaml else: python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + fld_file_path + " " + project + " " + output_yaml + " --revcomp_i5"