-
Notifications
You must be signed in to change notification settings - Fork 2
/
sampleDNA.fa
300 lines (300 loc) · 9.55 KB
/
sampleDNA.fa
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
>promoter-1
AGCCAGGCGAGATATGATCTATATCAATTTCTCATCTATAATGCTTTGTTAGTATCT
CGTCGCCGACTTAATAAAGAGAGA
>promoter-2
CGGGCCTATAAGCCAGGCGAGATATGATCTATATCAATTTCTCATCTATAATGCTTT
GTTAGTATCTCGTCGCCGACTTAA
>promoter-3
TAAAATCAAATAGCCTACGCAATGTAGGCTTAATGATTAGTCTGAGTTATATTACGG
GGCGTTTTTTTAATGCCCCGCTTT
>promoter-4
TTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGC
GACAATTTTTTTTATCGGGAAATC
>promoter-5
TCGATTGAGCCTTCCAGTCCTTCGGGACTGGAATTTTTTTGTTCGGAGAACGAAGAT
AAGGCAAGTCAATCAAAACAGGAG
>promoter-6
ATAACATCACAAATGTCGCGACTCTCTCTGATTACCACGAATCAATATTTATCATAT
TCTTCTTTTCGTCCTCACTACTTA
>promoter-7
TAAAAAAATCGATCTCGTCAAATTTCAGACTTATCCATCAGACTATACTGTTGTACC
TATAAAGGAGCAGTGGAATAGCGT
>promoter-8
CAACGCCTGGCACTGCCGGGCGTTGTTCTTTTTAACTTCAGGCGGGTTACAATAGTT
TCCAGTAAGTATTCTGGAGGCTGC
>promoter-9
ATATAAACTTGATGATTTAAGCATTTTCTTATACCCGTTCAGACGTTATTCTTATTT
CAGATCATCGTCAGAATTGACTCC
>promoter-10
AAGACGCGCTAACACGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTT
AATCCATACAGCAACAGTACTGGG
>promoter-11
AATTCAATACCGCTGTACAAAAACTTGAAGAAATTCAGGAGTGTCATTTAGTATCCG
GTGATTTCGACTACCTGTTGAAAA
>promoter-12
GGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGA
GAGCCTTTCTTGAGCCAGGAATAC
>promoter-13
TACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATG
ATTATGAGGCGAAGTATCTCTCTG
>promoter-14
CTAGCTAATAAGTGTGACCGCCGTCATATTACAGAGCGTTTTTTATTTGAAAATGAA
TCCATGAGTTCATTTCAGACAGGC
>promoter-15
CAAAAAGTCGTACTAGTCTCAGTTTTTGTTAAAAAAGTGTGTAGGATATTGTTACTC
GCTTTTAACAGGGCAACGGAACAC
>promoter-16
TATAAATGCACTTTGCGTGCCGCCCGTGACTACGCGGCACGCCATTTTCGAATAACA
AATACAGAGTTACAGGCTGGAAGC
>promoter-17
ACAATATTTGCCAGGGACTTGTGGTTTTCATTTAGGCGTGGCAATTCTATAATGATA
CGCATTATCTCAAGAGCAAATTCT
>promoter-18
TTTATTAACAATATTTGCCAGGGACTTGTGGTTTTCATTTAGGCGTGGCAATTCTAT
AATGATACGCATTATCTCAAGAGC
>promoter-19
GGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACAAACGCT
GTTGGCAAGCCAGAGTAACCCCGG
>promoter-20
TATTTAAATTAAGCCTGTAATGCCTTGCTTCCATTGCGGATAAATCCTACTTTTTTA
TTGCCTTCAAATAAATTTAAGGAG
>promoter-21
TATTTAAACACGAGTCCTTTGCACTTGCTTACTTTATCGATAAATCCTACTTTTTTA
ATGCGATCCAATCATTTTAAGGAG
>promoter-22
GATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTGTTATGCTATGGTTAT
TTCATACCATAAGCCTAATGGAGC
>promoter-23
TAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTGTTATGCTATG
GTTATTTCATACCATAAGCCTAAT
>promoter-24
ATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATT
CACAATAAAAAATAACCATATTGG
>promoter-25
TCCCACGATGAAAACACGCCACCCCTTGAACCAACGGGCGTTTTCCGTAACACTGAA
AGAATGTAAGCGTTTACCCACTAA
>promoter-26
TTTCCATTGCTGTGACTCGATTCACGAAGTCCTGTATTCAGTGCTGACAAAATAGCC
GCCAGCAAGCAGTCATTTACTGCA
>promoter-27
GTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACA
GGCAACCTTTTATTCACTAACAAA
>promoter-28
TGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGG
GGCGCCGACCCCATGTGGTCTCAA
>promoter-29
TGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGAT
CTCGACGAAATGGCTGCACCTAAA
>promoter-30
TATTGTCGTTTTTGTGATCGTTATCTCGATATTTAAAAACAAATAATTTCATTATAT
TTTGAAATCGAAAACAAACGACAG
>promoter-31
ATCTGTTAATAAAGCTCGAATTGTGATGACGATCACACATGTTAAAACCTATAATTA
ATTGCTACTAAAATATTAATGAAT
>promoter-32
AAGTGCCGCCACTATAGGTATTTGCTGGTAGAAGCTCAACGGACAATTTATAATGGC
TCAGATTAAAAAAACTAATAGGTT
>promoter-33
AATCTGAGCCATTATAAATTGTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGC
GGCACTTCCTGAGCCGGAACGAAA
>promoter-34
AAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAG
AACAACTCACCCCTTAAAGGAATA
>promoter-35
ATGTGATGATCAATTTTACCTTATGGTTAACAGTCTGTTTCGGTGGTAAGTTCAGGC
AAAAGAGAACGATTGCGTTGGGGA
>promoter-36
CTTTCCTGGGTCATTTTTTTCTTGCTTACCGTCACATTCTTGATGGTATAGTCGAAA
ACTGCAAAAGCACATGACATAAAC
>promoter-37
CCAGCTCTGTGACCTTGTCTTGGTTAACTCAATGTTAAATTGATGTAACATAATCAC
TTACGTGATGTGCGTGTTTTGCGA
>promoter-38
GGTCTGACCGGTAGCTAAAGAGATAGACGAAAACGAAAAGCCCGCTTAATAACTGTT
CACAGAAGCAGCGCGCAAAAATCA
>promoter-39
CTGGGGAGTGGCACGCCATTCCCCCATTCGCTGGAGAGGATAACCCAGTGATTACGG
CTGTCTGGCAGGGACCTGCACACG
>promoter-40
CTGTCCATTTCACGATGAAAAAAATGTAGTTTTTTCAAGGTGAAGCGGTTTAAATTC
GTTCTCAAATTACAGTCAGGACGC
>promoter-41
AAATTAAGGTACTGCCTTAATTTTCTGCAGACAAAAGGCGTGACGATGGTCGAAAAT
GGCGCTTTCGTCAGCGGGGATAAT
>promoter-42
GCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAATGTTTCCATT
GAAGCACTATATTGGTGCAACATT
>promoter-43
CACGAGCTGGATGCAAACGATTTCAAGGAATGAATTGGCGTTATGTGTTACGTTTAG
CAGATCAAAAGACAGGCGACCTTT
>promoter-44
TCACCCACGCGGCGAGAATGGCGGGGCGCAACCGGACAGAATTTTATAAACTGCTTT
CCCGACACGAGCTGGATGCAAACG
>promoter-45
TTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTTATCCGTAAAAAGCTATAATGC
ACTAAAATGGTGCAACCTGTTCAG
>promoter-46
AAGCGGTGGAGATCTTCTCTGCCGCTTTTTTTTTCATCAATCATCCCCATAATCCTT
GTTAGATTATCAATTTTAAAAAAC
>promoter-47
TTACCCGACGTTGTAATCCAACATTGCGAGCGGCGTAAAGCCGCCGCTATACTAAAA
CAACATTTTGAATCTGTTAGCCAT
>promoter-48
AATGTTCAAAATGACGCATGAAATCACGTTTCACTTTCGAATTATGAGCGAATATGC
GCGAAATCAAACAATTCATGTTTT
>promoter-49
TCACTCTAAAATGTTTTTTCAATGTTACCTAAAGCGCGATTCTTTGCTAATATGTTC
GATAACGAACATTTATGAGCTTTA
>promoter-50
GGCACACACATTTTAAGTTCGATATTTCTCGTTTTTGCTCGTTAACGATAAGTTTAC
AGCATGCCTACAAGCATCGTGGAG
>non-promoter-1
GCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCT
TGCGCAGCCGATGGTGCAGGGCGG
>non-promoter-2
CGAAAGCCCGCGGCGTGATGCTGAAATCCTGCTGGAGCATGTTACCGGCAGAGGGCG
TACTTTTATTCTCGCCTTTGGTGA
>non-promoter-3
CATGATCCTGGCTTGCGAAGCAATCCGCCGCGATTTTCCCTCGCAAGATGTTTACGA
CGAACTGGAGCGTCTCGTTAGTCT
>non-promoter-4
GCCGTTCGTACTGTTTGGCGGTATGAACGTGTTGGAATCTCGCGATCTGGCGATGCG
CATTTGCGAGCACTACGTAACTGT
>non-promoter-5
TATTTTCCCGGTTCTGGCGCTGGTAGTGCTGTTCCTGTGGGGAAGCAGCCAGACACT
ACCAGTGGTCATTGCCATCAATCT
>non-promoter-6
ACCGTCTCATGCCCAGGATATCTATAAAGAAGCGTTCAACAGCGCATGGGATCAATA
TAAAGATAAAGAAGATCGGCGTGA
>non-promoter-7
AGATTTCGGCGAAACCAGTATGAATGATAACGGGCTGGATACTGGCGAGCAGGCAAA
AGCTTTCGCATTGGGAAAAGTCCG
>non-promoter-8
GCTGCGAACTGGCGTAAAACAGCTTATCAGTATGGCACCAGATATCACCGTGGTTGG
CGAAGCGAGTAATGGCGAACAGGG
>non-promoter-9
TTGGCGACCGGAAGATCCTGCGTTCTGGCAACAACGCGGTCAACGTATTGCCAGCCG
CAACCTGTGGATTTCCGTTCCCTG
>non-promoter-10
CTTTGCCGATGGGCATGGCCAGCTTCTCAATACCAACCGTGACTGGGAGGATGGATA
TCGCCAGCGTTGGCAGCATGACAA
>non-promoter-11
CGGCTGCCACACCTGTTCAGTTACCTGTAAAAACGTCTGGACCAGCCGTGAAGGCGT
GGAATATGCGTGGTTCAACAACGT
>non-promoter-12
GGCGGTCTTCCTGATTGGTAGCTGGCTGCGTTATGACTACGGGCAGTACACCTGGCG
CGCGGCGTCCAGCCAGATGCTGGA
>non-promoter-13
GGTATTTCGCTCGCTTCTGGATTCATGGTTTTCCTCATTGGGAGCGACAACGGTACT
GGCGGCTGATGGGGTGGATGCCCT
>non-promoter-14
ATTAGGAACCAGGATGTTGCCGGCGACGAAAGCCATCCCGAAAGAGATGCTGCCACT
TGTCGATAAGCCATTAATTCAATA
>non-promoter-15
GGCAAGAGAATGTACACTTGAAACGCTGGAAGAAATGCTGGAAAAATTAGAAGTTGT
TGTTAACGAACGTCGCGAAGAAGA
>non-promoter-16
AGCATTGTTGCAATCTTCATACAATTACCAGGAACGCGGCATGCGCACTGTCGTATA
TACGGCAGAAATTGATGATCGCTT
>non-promoter-17
GTTATTTGCGCTGGTCAACCCGGTAGGGATTATTCCCGTCTTTATCAGCATGACCAG
TTATCAGACAGCGGCAGCGCGAAA
>non-promoter-18
TATTCTTATTACTATTTCGTTCTTTATGATGCGCCTCGCGCCGGGAAGCCCTTTTAC
CGGCGAACGTACTTTACCGCCAGA
>non-promoter-19
TAAAGTGCACTTTGAAATCAAAGATGGCAAACAGTGGTTCTGGCAACCGCCGAAAAC
GCTCAAAGCCGTCGATGGTGTCAC
>non-promoter-20
GCCAACAGAGGTTAAACAGGTAGTAACTATGGATATGGATCTAAACAATCGCCTGAC
TGAAGATGAAACGCTTGAACAGGC
>non-promoter-21
TTCAAATAACGTACTTTACAACTTTCCCGAACAAGGAGTTGTGCCCGTGTTGTATGT
TATTTACGCTCAAGACAAAGCTGA
>non-promoter-22
CTGCATTCATGGTGCTGTTGTGGCGGGTCTGCTCTATACCTCGGTACATCAGGTTAT
TGAACTACCTGCGCCTGCGCAGCC
>non-promoter-23
CAAGATTTATGACATCTATGCGGCTACTGCGGCGCTGATCGTCGCCACGGCGATTGT
GCTTATCTATAGCTGGGTTCGCTT
>non-promoter-24
TAATCAATTTATGACCATTCTGTTGGTATCGTTGCTATGTGCGTTTATCACAGTGGT
GTTAGGGCATGTTTTCTCACCCAG
>non-promoter-25
CAGTGCCTTTGCGCATGAAGCAGGCGAATTTTTTATGCGTGCAGGTTCTGCAACCGT
ACGTCCAACAGAAGGTGCTGGTGG
>non-promoter-26
CTACAGCGCAGAAAAACAATTAACCCGGGCACTGGCAAAACTCGCAAGAGCAACATC
AAATGAAAAATTAAGTCAGGCTTT
>non-promoter-27
AAATAACATGGCCGAACATCGTGGTGGTTCAGGAAATTTCGCCGAAGACCGTGAGAA
GGCATCCGACGCAGGCCGTAAAGG
>non-promoter-28
CGCATTCGTTCCTTTCGTCACGCTCGGTGATCCGGGCATTGAGCAGTCATTGAAAAT
TATCGATACGCTAATTGAAGCCGG
>non-promoter-29
AGCTTCCGATGGCTGCCTGACGCCAGAAGCATTGGTGCACCGTGCAGTCGAGATGCG
CGTCGGCACCCTGGCGATCACCGA
>non-promoter-30
GACGGGAGCCAGCGATGGTATTGGTCGTGAAGCCGCGATGACGTATGCACGCTATGG
TGCGACAGTGATTCTGTTGGGCCG
>non-promoter-31
TGTGCTAGCGATTGCGGCGATTGCCGCCATTATTGTCAATGTTGCTCAACGTAATAA
ACGCCAGCGTGGCGAGTTACGGGT
>non-promoter-32
CAACAAAATCATTCGTGAGCATGAGGATACGCTCGCAGGGATTGAAGCCACCGGCGT
CACGCAGCGTAATGGCGTGCTGGT
>non-promoter-33
GAATGTCTCATCAACAGCGGAAGGACTTTACACATCACAACCCGGGATCAGTAAACA
AGTCAGAATGCTGGAAGACGAGCT
>non-promoter-34
CATGCCAGTAGCCGTATGGATTTCTGGCTGGCGTTGGCAACCTGGAGAACAAAGTTG
GCTACTAAAAGCGGCTTTTTGGGT
>non-promoter-35
GGTCACGTTGGGTGCGCAGAACGATCAACAGGTGACGTTTAATTATCTGTTAGCGCA
AGGGGAGTACCGTATTTCCACATT
>non-promoter-36
GTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATGAAGCCAACCGCTTGTC
GCGTGATTACGTAGCGGGGGTTAA
>non-promoter-37
TATTGATGAGCCCAAAGCGGCCCCTGTACGCCCTAAAGGCGACGGTGTGGTGCGTAT
TCAGCGTCAGACCAGTGGACGTAA
>non-promoter-38
GGCAATGTCTCTGAGTGCCTGTTCTAACTGGTCTAAACGGGACCGCAACACCGCAAT
CGGCGCGGGTGCAGGGGCATTAGG
>non-promoter-39
CCAGACGCCACGCGCTGAAGGGGTGGTAAAAGCCACAGAAAAAGGCTTTGGCTTCCT
GGAAGTCGACGCGCAAAAAAGTTA
>non-promoter-40
CGATTTCCTTTACGACCAAGGAGCGCCCATGGAACAACGCCACATCACCGGCAAAAG
CCACTGGTATCATGAAACGCAATC
>non-promoter-41
ACTATCCATCGCCTACGGTATCGCTCAGGCGATGCACCGCGAAGGAGCTGAACTGGC
ATTCACCTACCAGAACGACAAACT
>non-promoter-42
CCGGACCGGCTGGTTTCGTCGTCAGACCGTAGAAGCGGTAAAACCCTTGAGCTTTAC
GCTACGTGAAGGCCAGACACTGGC
>non-promoter-43
TACCGCCTGGCGCAAATTTTATAGTGACGCCTCTGCGATGGTCGGCCTGTACGGCTG
CGCGGGGCTGGCTGTACTGTGTAT
>non-promoter-44
TCAGGCAATCGCCGCGCCTGAATCTCCCCCGCATGCTGATATCCGCGACAGCGGTTT
TGTCTATTGCGTCAGCGGGCAAGT
>non-promoter-45
GACCGAATGCGCAGAGCCTGTCGCAGAGGCTGAACGCACACCGCTGGCCCACTACTT
CCAGTTACTGCTCACCCGTTTGAT
>non-promoter-46
AATTATGGCTATTAATTCACCACTGAATATTGCTGCGCAACCCGGCAAAACCCGTCT
GCGAAAATCACTGAAATTGTGGCA
>non-promoter-47
GCGGAAAACAAACCAAAGGCGAAGAATCATGGAAACCAATATCGTTGAAGTAGAGAA
CTTTGTTCAGCAGTCAGAAGAGAG
>non-promoter-48
AATGTGCAGGAACAGGCTTAAGGGTCATGCGACCCAGACTCTGCAAGAAAAGTACCT
GAATGCCATCATCCATGCAGGCGG
>non-promoter-49
ACCATTCGACACGCTGAATGAGTCAATCACCTGCGACGTTTGCGTGGTTGGCGGCGG
CTATACCGGGCTCTCCTCCGCGCT
>non-promoter-50
GGTTGGCGTGATGTGTAACTTCTTCGCCCAGTCGGCTGAAAACGCCACGCTGAAGGA
TGTTGAGGGCAACGAGTACATCGA