From 34ba01b42bf4a5b86c228340d1579f1b8e5bd4a4 Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Thu, 7 Nov 2024 10:32:50 +0000 Subject: [PATCH 1/7] update lockfile --- poetry.lock | 1317 +++++++++++++++++++++++++++------------------------ 1 file changed, 708 insertions(+), 609 deletions(-) diff --git a/poetry.lock b/poetry.lock index 36e12ec6d9..abb16e0088 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,27 +2,25 @@ [[package]] name = "altair" -version = "5.3.0" +version = "5.4.1" description = "Vega-Altair: A declarative statistical visualization library for Python." optional = false python-versions = ">=3.8" files = [ - {file = "altair-5.3.0-py3-none-any.whl", hash = "sha256:7084a1dab4d83c5e7e5246b92dc1b4451a6c68fd057f3716ee9d315c8980e59a"}, - {file = "altair-5.3.0.tar.gz", hash = "sha256:5a268b1a0983b23d8f9129f819f956174aa7aea2719ed55a52eba9979b9f6675"}, + {file = "altair-5.4.1-py3-none-any.whl", hash = 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11 Nov 2024 17:51:04 +0000 Subject: [PATCH 2/7] change duckdb default timestamp format duckdb changed how it deals with timezones, and doesn't recognise 'Z' (iso-8601 utc zero-offset specifier) as a timezone. So instead let's just treat it as a literal for default purposes --- splink/internals/dialects.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/splink/internals/dialects.py b/splink/internals/dialects.py index 2759f9623d..ce26469e15 100644 --- a/splink/internals/dialects.py +++ b/splink/internals/dialects.py @@ -208,7 +208,7 @@ def default_date_format(self): @property def default_timestamp_format(self): - return "%Y-%m-%dT%H:%M:%S%Z" + return "%Y-%m-%dT%H:%M:%SZ" def _try_parse_date_raw(self, name: str, date_format: str = None) -> str: if date_format is None: From 242c360cd4710059ce3fdab9f1a2d925df466a8d Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Mon, 11 Nov 2024 17:58:44 +0000 Subject: [PATCH 3/7] substr -> substring for sake of consistency let's pin dialect to duckdb also --- tests/test_sql_transform.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/tests/test_sql_transform.py b/tests/test_sql_transform.py index b72e7efb58..0c3beb8d9c 100644 --- a/tests/test_sql_transform.py +++ b/tests/test_sql_transform.py @@ -11,7 +11,7 @@ def move_l_r_test(br, expected): - res = move_l_r_table_prefix_to_column_suffix(br) + res = move_l_r_table_prefix_to_column_suffix(br, sqlglot_dialect="duckdb") assert res.lower() == expected.lower() @@ -20,8 +20,8 @@ def test_move_l_r_table_prefix_to_column_suffix(): expected = "first_name_l = first_name_r" move_l_r_test(br, expected) - br = "substr(l.last_name, 1, 2) = substr(r.last_name, 1, 2)" - expected = "substr(last_name_l, 1, 2) = substr(last_name_r, 1, 2)" + br = "substring(l.last_name, 1, 2) = substring(r.last_name, 1, 2)" + expected = "substring(last_name_l, 1, 2) = substring(last_name_r, 1, 2)" move_l_r_test(br, expected) br = "l.name['first'] = r.name['first'] and levenshtein(l.dob, r.dob) < 2" From 04fdb66bd2cfda964d77da18bdc9026e7be24f08 Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Mon, 18 Nov 2024 17:00:31 +0000 Subject: [PATCH 4/7] inherit generator from the Spark version --- splink/internals/spark/spark_helpers/custom_spark_dialect.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/splink/internals/spark/spark_helpers/custom_spark_dialect.py b/splink/internals/spark/spark_helpers/custom_spark_dialect.py index ccf4c80210..e2b09c5d1e 100644 --- a/splink/internals/spark/spark_helpers/custom_spark_dialect.py +++ b/splink/internals/spark/spark_helpers/custom_spark_dialect.py @@ -1,6 +1,5 @@ from sqlglot import exp from sqlglot.dialects import Dialect, Spark -from sqlglot.generator import Generator as GeneratorSqlglot def cast_as_double_edit(self, expression): @@ -25,7 +24,7 @@ class Parser(Spark.Parser): **Spark.Parser.FUNCTIONS, } - class Generator(GeneratorSqlglot): + class Generator(Spark.Generator): TYPE_MAPPING = { **Spark.Generator.TYPE_MAPPING, } From 1cd97120a42515b7e7ad6df115c86af28db187ba Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Mon, 18 Nov 2024 17:00:45 +0000 Subject: [PATCH 5/7] correct postgres setup path --- scripts/postgres_docker/setup.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/postgres_docker/setup.sh b/scripts/postgres_docker/setup.sh index cc7dd64a26..7273fafa50 100755 --- a/scripts/postgres_docker/setup.sh +++ b/scripts/postgres_docker/setup.sh @@ -2,4 +2,4 @@ # run from root # add -d for detached mode (run in background) -docker-compose -f scripts/postgres/docker-compose.yaml up +docker-compose -f scripts/postgres_docker/docker-compose.yaml up From 7941433da6512ce3900ad1e1d0f327b2b6864abd Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Wed, 20 Nov 2024 09:32:48 +0000 Subject: [PATCH 6/7] register table on each mock call this ensures the dummy frame is accessible to the db_api connexion, which is no longer guaranteed in duckdb --- tests/test_caching.py | 19 ++++++++++++++++--- 1 file changed, 16 insertions(+), 3 deletions(-) diff --git a/tests/test_caching.py b/tests/test_caching.py index ce87a1fcb4..9a0db49c94 100644 --- a/tests/test_caching.py +++ b/tests/test_caching.py @@ -16,15 +16,28 @@ from tests.basic_settings import get_settings_dict df = pd.read_csv("./tests/datasets/fake_1000_from_splink_demos.csv") -__splink__dummy_frame = pd.DataFrame(["id"]) +_dummy_pd_frame = pd.DataFrame(["id"]) def make_mock_execute(db_api): # creates a mock version of linker._sql_to_splink_dataframe, # so we can count calls - dummy_splink_df = DuckDBDataFrame("template", "__splink__dummy_frame", db_api) + dummy_table_name = "__splink__dummy_frame" + dummy_splink_df = DuckDBDataFrame("template", dummy_table_name, db_api) + + def register_and_return_dummy_frame(*args, **kwargs): + # need to make sure that the dummy frame always exist in the context + # we are running tests + # not actually interested in the frame itself, but needs to exist in + # connexion in case a method tries to access it + db_api._con.sql( + f"CREATE TABLE IF NOT EXISTS {dummy_table_name} AS " + f"SELECT * FROM _dummy_pd_frame" + ) + return dummy_splink_df + mock_execute = create_autospec( - db_api._sql_to_splink_dataframe, return_value=dummy_splink_df + db_api._sql_to_splink_dataframe, side_effect=register_and_return_dummy_frame ) return mock_execute From 14b131d8fe2f214cf1f2776ee093bfae4b1a6887 Mon Sep 17 00:00:00 2001 From: ADBond <48208438+ADBond@users.noreply.github.com> Date: Wed, 20 Nov 2024 11:41:13 +0000 Subject: [PATCH 7/7] constrain dev pandas version to deal with getting inconsistent pandas + numpy versions from dependency resolver for python >= 3.10 --- poetry.lock | 138 +++++++++++++++++++++++++++++++++++++++---------- pyproject.toml | 7 +++ 2 files changed, 117 insertions(+), 28 deletions(-) diff --git a/poetry.lock b/poetry.lock index abb16e0088..1ac7a752bf 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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["botocore[crt] (>=1.33.2,<2.0a.0)"] [[package]] name = "setuptools" -version = "75.5.0" +version = "75.6.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = true python-versions = ">=3.9" files = [ - {file = "setuptools-75.5.0-py3-none-any.whl", hash = "sha256:87cb777c3b96d638ca02031192d40390e0ad97737e27b6b4fa831bea86f2f829"}, - {file = "setuptools-75.5.0.tar.gz", hash = "sha256:5c4ccb41111392671f02bb5f8436dfc5a9a7185e80500531b133f5775c4163ef"}, + {file = "setuptools-75.6.0-py3-none-any.whl", hash = "sha256:ce74b49e8f7110f9bf04883b730f4765b774ef3ef28f722cce7c273d253aaf7d"}, + {file = "setuptools-75.6.0.tar.gz", hash = "sha256:8199222558df7c86216af4f84c30e9b34a61d8ba19366cc914424cdbd28252f6"}, ] [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.7.0)"] -core = ["importlib-metadata (>=6)", "jaraco.collections", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more-itertools", "more-itertools (>=8.8)", "packaging", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] +core = ["importlib_metadata (>=6)", "jaraco.collections", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"] enabler = ["pytest-enabler (>=2.2)"] test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"] -type = ["importlib-metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (>=1.12,<1.14)", "pytest-mypy"] +type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (>=1.12,<1.14)", "pytest-mypy"] [[package]] name = "six" @@ -1620,4 +1702,4 @@ spark = ["pyspark"] [metadata] lock-version = "2.0" python-versions = ">=3.8.0,<4.0.0" -content-hash = "82eb3ca8c6c624fb21a3f4e35ea0a309e512d73f06d5a567f6c4aab3462de1a8" +content-hash = "bf16f96aed8647dd153d06067dec7ccc7b76a89ddc2428f2d1329ed613b3f78f" diff --git a/pyproject.toml b/pyproject.toml index 871786bf1d..04eb892dd4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,6 +48,13 @@ sqlalchemy = ">=1.4.0" # temporarily use binary version, to avoid issues with pg_config path psycopg2-binary = ">=2.8.0" igraph = ">=0.11.2" +# 2.2.2 is first version that supports numpy >= 2.0.0 +# if we don't constrain this, we can end up with numpy >= 2.0.0 and pandas < 2.2.2 +# particularly in pythons 3.10 and 3.11 +pandas = [ + {version= ">1.3.5", python = ">=3.8"}, + {version=">=2.2.2", python = ">=3.10"}, +] [tool.poetry.group.linting] [tool.poetry.group.linting.dependencies]