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Update fastqc to 0.12.1 to allow fixing Java OOM issue #74

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Update fastqc to 0.12.1 to allow fixing Java OOM issue

Update fastqc to 0.12.1 to allow fixing Java OOM issue #74

Triggered via push March 27, 2024 03:25
@lczechlczech
pushed c09eb40
master
Status Failure
Total duration 10m 34s
Artifacts 48

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
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52 errors
envs (ubuntu-20.04, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
example (ubuntu-20.04)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 1.
example (ubuntu-22.04)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, base, mamba)
Process completed with exit code 1.
test (ubuntu-22.04, base)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, pileup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 1.
envs (ubuntu-22.04, mamba)
Process completed with exit code 1.
test (ubuntu-20.04, base)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 1.
envs (macos-12, mamba)
Process completed with exit code 1.
example (macos-12)
Process completed with exit code 1.
envs (macos-11, mamba)
Process completed with exit code 1.
test (macos-11, base)
Process completed with exit code 1.
example (macos-11)
Process completed with exit code 1.
test (macos-12, base)
Process completed with exit code 1.

Artifacts

Produced during runtime
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logs-example-macos-11 Expired
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logs-example-macos-12 Expired
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logs-example-ubuntu-20.04 Expired
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logs-example-ubuntu-22.04 Expired
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logs-test-macos-11-base Expired
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logs-test-macos-12-base Expired
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logs-test-ubuntu-20.04-base Expired
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logs-test-ubuntu-22.04-base Expired
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logs-test-ubuntu-latest-base Expired
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logs-test-ubuntu-latest-calling-bcftools-1 Expired
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logs-test-ubuntu-latest-calling-freebayes-1 Expired
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logs-test-ubuntu-latest-calling-haplotypecaller-1 Expired
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logs-test-ubuntu-latest-calling-haplotypecaller-3 Expired
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logs-test-ubuntu-latest-calling-haplotypecaller-4 Expired
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logs-test-ubuntu-latest-duplicates-dedup-1 Expired
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logs-test-ubuntu-latest-duplicates-dedup-2 Expired
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logs-test-ubuntu-latest-hafpipe-1 Expired
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logs-test-ubuntu-latest-hafpipe-3 Expired
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logs-test-ubuntu-latest-hafpipe-4 Expired
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logs-test-ubuntu-latest-mapping-bowtie2-1 Expired
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logs-test-ubuntu-latest-mapping-bowtie2-2 Expired
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logs-test-ubuntu-latest-mapping-bwa-mem-1 Expired
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logs-test-ubuntu-latest-mapping-bwa-mem2-1 Expired
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logs-test-ubuntu-latest-mapping-bwa-mem2-2 Expired
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logs-test-ubuntu-latest-mapping-bwaaln-1 Expired
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logs-test-ubuntu-latest-mapping-bwaaln-2 Expired
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logs-test-ubuntu-latest-mapping-bwaaln-3 Expired
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logs-test-ubuntu-latest-mapping-bwaaln-4 Expired
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logs-test-ubuntu-latest-pileup-1 Expired
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logs-test-ubuntu-latest-trimming-adapterremoval-1 Expired
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logs-test-ubuntu-latest-trimming-adapterremoval-2 Expired
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logs-test-ubuntu-latest-trimming-adapterremoval-3 Expired
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logs-test-ubuntu-latest-trimming-cutadapt-1 Expired
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logs-test-ubuntu-latest-trimming-cutadapt-2 Expired
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logs-test-ubuntu-latest-trimming-fastp-1 Expired
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logs-test-ubuntu-latest-trimming-fastp-2 Expired
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logs-test-ubuntu-latest-trimming-fastp-3 Expired
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logs-test-ubuntu-latest-trimming-seqprep-1 Expired
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logs-test-ubuntu-latest-trimming-seqprep-2 Expired
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logs-test-ubuntu-latest-trimming-skewer-1 Expired
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logs-test-ubuntu-latest-trimming-skewer-2 Expired
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