fix output names

milaboratory · Feb 20, 2024 · a1664ca · a1664ca
1 parent 5652995
commit a1664ca
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -134,7 +134,7 @@ val toObfuscate: Configuration by configurations.creating {
 val obfuscationLibs: Configuration by configurations.creating
 
 
-val mixcrAlgoVersion = "4.6.0-49-rework_analyze"
+val mixcrAlgoVersion = "4.6.0-50-rework_analyze"
 // may be blank (will be inherited from mixcr-algo)
 val milibVersion = ""
 // may be blank (will be inherited from mixcr-algo or milib)

diff --git a/src/main/kotlin/com/milaboratory/mixcr/cli/CommandAnalyze.kt b/src/main/kotlin/com/milaboratory/mixcr/cli/CommandAnalyze.kt
@@ -453,7 +453,7 @@ object CommandAnalyze {
 
             fun setActualAlignOutputs(fileNames: List<String>) {
                 val outputSeed = Path(nextInputs.requireSingleton().fileNames.requireSingleton()).name
-                val samples = listSamplesForSeedFileName("alignments", outputSeed, fileNames)
+                val samples = listSamplesForSeedFileName(if (outputNamePrefix.isBlank()) "alignments" else "", outputSeed, fileNames)
                 nextInputs = samples.map {
                     InputFileSet(it.sample, listOf(outputFolder.resolve(it.fileName).toString()))
                 }