From 3340fd433233cf851aabd89b7a744fa61395e5c2 Mon Sep 17 00:00:00 2001 From: Bolotin Dmitriy Date: Mon, 22 Jul 2019 19:37:17 +0100 Subject: [PATCH] Release v3.0.8 --- CHANGELOG | 20 ++++++++++++++++++++ CHANGELOG_CURRENT | 11 ----------- pom.xml | 2 +- 3 files changed, 21 insertions(+), 12 deletions(-) diff --git a/CHANGELOG b/CHANGELOG index 53e89c538..59f09b128 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,4 +1,24 @@ +MiXCR 3.0.8 (22 Jul 2019) +======================== + +-- Alignments are forced to the corresponding edge if the same V/J gene is detected in the opposite + PE read mate +-- Average quality threshold (`-OaverageQualityThreshold=...`) in `assembleContigs` increased to + `20` +-- Added `exportAlignmentsForClones` action +-- All indels in homopolimeric stretches are now shifted left in all alignment algorihtms +-- Smarter base V/J/C hit selection in `assembleContigs` +-- Read quality trimming (see help for `--trimming-window-size` and `--trimming-quality-threshold` + options in `align`) (disabled by default until 3.1) +-- Fix exception in `-mutationsDetailed` and similar export options +-- Fixes in step skipping logic in `analyze` (additional automatic parameter adjustment for VDJC + libraries covering only `VRegion`) +-- Several more fixes for `assembleContigs` +-- minor: Fixes incorrect numbers in `assemble` report +-- minor: Fix for filterAlignmentsAction + + MiXCR 3.0.7 (20 May 2019) ======================== diff --git a/CHANGELOG_CURRENT b/CHANGELOG_CURRENT index 920916b6d..e69de29bb 100644 --- a/CHANGELOG_CURRENT +++ b/CHANGELOG_CURRENT @@ -1,11 +0,0 @@ -Alignments are forced to the corresponding edge if the same V/J gene is detected in the opposite PE read mate -Average quality threshold (`-OaverageQualityThreshold=...`) in `assembleContigs` increased to `20` -Added `exportAlignmentsForClones` action -All indels in homopolimeric stretches are now shifted left in all alignment algorihtms -Smarter base V/J/C hit selection in `assembleContigs` -Read quality trimming (see help for `--trimming-window-size` and `--trimming-quality-threshold` options in `align`) (disabled by default until 3.1) -Fix exception in `-mutationsDetailed` and similar export options -Fixes in step skipping logic in `analyze` (additional automatic parameter adjustment for VDJC libraries covering only `VRegion`) -Several more fixes for `assembleContigs` -minor: Fixes incorrect numbers in `assemble` report -minor: Fix for filterAlignmentsAction \ No newline at end of file diff --git a/pom.xml b/pom.xml index 312318068..596f5e7d4 100644 --- a/pom.xml +++ b/pom.xml @@ -33,7 +33,7 @@ com.milaboratory mixcr - 3.0.8-SNAPSHOT + 3.0.8 jar MiXCR