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poetry.lock
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# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand.
[[package]]
name = "anybadge"
version = "1.14.0"
description = "Simple, flexible badge generator for project badges."
optional = false
python-versions = ">=3.7"
files = [
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]
[package.dependencies]
packaging = "*"
[[package]]
name = "astroid"
version = "3.3.5"
description = "An abstract syntax tree for Python with inference support."
optional = false
python-versions = ">=3.9.0"
files = [
{file = "astroid-3.3.5-py3-none-any.whl", hash = "sha256:a9d1c946ada25098d790e079ba2a1b112157278f3fb7e718ae6a9252f5835dc8"},
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]
[package.dependencies]
typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
[[package]]
name = "bgzip"
version = "0.5.0"
description = "Utilities working with blocked gzip streams."
optional = false
python-versions = "*"
files = [
{file = "bgzip-0.5.0.tar.gz", hash = "sha256:26ea6eed35ac43ea36cff828ca0f94925298ac21283cd0debaf072a92ac4be74"},
]
[[package]]
name = "biom-format"
version = "2.1.16"
description = "Biological Observation Matrix (BIOM) format"
optional = false
python-versions = ">=3.6"
files = [
{file = "biom-format-2.1.16.tar.gz", hash = "sha256:47f88d57a94ecaa4d06f3578ca394e78db6d12e46ab0886634743181e67dcfc9"},
]
[package.dependencies]
click = "*"
h5py = "*"
numpy = ">=1.9.2"
pandas = ">=0.20.0"
scipy = ">=1.3.1"
[package.extras]
anndata = ["anndata"]
hdf5 = ["h5py (>=2.2.0)"]
[[package]]
name = "black"
version = "23.12.1"
description = "The uncompromising code formatter."
optional = false
python-versions = ">=3.8"
files = [
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{file = "black-23.12.1-py3-none-any.whl", hash = "sha256:78baad24af0f033958cad29731e27363183e140962595def56423e626f4bee3e"},
{file = "black-23.12.1.tar.gz", hash = "sha256:4ce3ef14ebe8d9509188014d96af1c456a910d5b5cbf434a09fef7e024b3d0d5"},
]
[package.dependencies]
click = ">=8.0.0"
mypy-extensions = ">=0.4.3"
packaging = ">=22.0"
pathspec = ">=0.9.0"
platformdirs = ">=2"
tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
[package.extras]
colorama = ["colorama (>=0.4.3)"]
d = ["aiohttp (>=3.7.4)", "aiohttp (>=3.7.4,!=3.9.0)"]
jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
uvloop = ["uvloop (>=0.15.2)"]
[[package]]
name = "chardet"
version = "5.2.0"
description = "Universal encoding detector for Python 3"
optional = false
python-versions = ">=3.7"
files = [
{file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
{file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
]
[[package]]
name = "click"
version = "8.1.7"
description = "Composable command line interface toolkit"
optional = false
python-versions = ">=3.7"
files = [
{file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
{file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
]
[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}
[[package]]
name = "cloudpickle"
version = "3.1.0"
description = "Pickler class to extend the standard pickle.Pickler functionality"
optional = false
python-versions = ">=3.8"
files = [
{file = "cloudpickle-3.1.0-py3-none-any.whl", hash = "sha256:fe11acda67f61aaaec473e3afe030feb131d78a43461b718185363384f1ba12e"},
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]
[[package]]
name = "cogent3"
version = "2024.7.19a9"
description = "COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs."
optional = false
python-versions = "<3.13,>=3.9"
files = [
{file = "cogent3-2024.7.19a9-py3-none-any.whl", hash = "sha256:3a52e17f47ad8bf0b3d396ddfa4f5878061afb86e766b49a0eedb7e510985511"},
{file = "cogent3-2024.7.19a9.tar.gz", hash = "sha256:5f1ab042294f718a77e0d8fa8adf3b20fefe9ef5a47b1c2092e50e8560883afa"},
]
[package.dependencies]
chardet = "*"
loky = "*"
numba = [
{version = ">0.54", markers = "python_version >= \"3.10\" and python_version < \"3.12\" and python_version != \"3.11\""},
{version = ">=0.59.0", markers = "python_version == \"3.12\""},
{version = ">=0.57.0", markers = "python_version == \"3.11\""},
]
numpy = "*"
scipy = "*"
scitrack = "*"
stevedore = "*"
tqdm = "*"
typing_extensions = "*"
[package.extras]
dev = ["flit", "ipykernel", "ipython", "ipywidgets", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "nbconvert (>5.4)", "nbformat", "nbsphinx", "nox", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "pytest", "pytest-cov", "pytest-xdist", "ruff (==0.6.7)", "scriv", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video", "tinydb"]
doc = ["click", "ipykernel", "ipython", "ipywidgets", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "nbconvert (>5.4)", "nbformat", "nbsphinx", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video"]
extra = ["kaleido", "pandas", "plotly", "psutil"]
test = ["kaleido", "nox", "pandas", "plotly", "psutil", "pytest", "pytest-cov", "pytest-xdist", "ruff (==0.6.7)", "tinydb"]
[[package]]
name = "colorama"
version = "0.4.6"
description = "Cross-platform colored terminal text."
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
files = [
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]
[[package]]
name = "coverage"
version = "7.6.8"
description = "Code coverage measurement for Python"
optional = false
python-versions = ">=3.9"
files = [
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