From b0cba22df0d9e1cbec2ac26d6fa7b649069e7010 Mon Sep 17 00:00:00 2001 From: Michael Hall Date: Fri, 29 Nov 2024 14:31:38 +1000 Subject: [PATCH] chore: update genomescope info --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index cbe82f0..d5675db 100644 --- a/README.md +++ b/README.md @@ -420,8 +420,8 @@ metric. The methods we compare against are: [GenomeScope2](https://github.com/tbenavi1/genomescope2.0): to get estimates from GenomeScope2, you need to first generate -a k-mer spectrum. We used [KMC](https://github.com/refresh-bio/KMC) for this. You can find a Python script that takes reads -and generates a k-mer spectrum in [`genomescope.py`](./paper/workflow/scripts/genomescope.py). The list of parameters used +a k-mer spectrum. We used [KMC](https://github.com/refresh-bio/KMC) for this. You can find a Python script that takes +reads, generates a k-mer spectrum, and estimates genome size in [`genomescope.py`](./paper/workflow/scripts/genomescope.py). The list of parameters used can also be found in the [workflow config](./paper/config/config.yaml). [Mash](https://github.com/marbl/Mash): we used `mash sketch` on the reads, which prints out the estimated genome size in