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<!DOCTYPE html>
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<title>Chapter 2 Introduction | Project Log</title>
<meta name="description" content="This log records the progress of the summer project." />
<meta name="generator" content="bookdown 0.17 and GitBook 2.6.7" />
<meta property="og:title" content="Chapter 2 Introduction | Project Log" />
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<meta property="og:description" content="This log records the progress of the summer project." />
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<meta name="twitter:title" content="Chapter 2 Introduction | Project Log" />
<meta name="twitter:description" content="This log records the progress of the summer project." />
<meta name="author" content="LING Ludi" />
<meta name="date" content="2020-05-22" />
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<li><a href="./">A Minimal Book Example</a></li>
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<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> Project</a></li>
<li class="chapter" data-level="2" data-path="intro.html"><a href="intro.html"><i class="fa fa-check"></i><b>2</b> Introduction</a>
<ul>
<li class="chapter" data-level="2.1" data-path="intro.html"><a href="intro.html#transcriptional-factors"><i class="fa fa-check"></i><b>2.1</b> Transcriptional factors</a></li>
<li class="chapter" data-level="2.2" data-path="intro.html"><a href="intro.html#chip-seq"><i class="fa fa-check"></i><b>2.2</b> ChIP-seq</a></li>
<li class="chapter" data-level="2.3" data-path="intro.html"><a href="intro.html#ulicutrun"><i class="fa fa-check"></i><b>2.3</b> uliCUT&RUN</a></li>
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<li class="chapter" data-level="3" data-path="download-data.html"><a href="download-data.html"><i class="fa fa-check"></i><b>3</b> Download Data</a>
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<li class="chapter" data-level="3.1" data-path="download-data.html"><a href="download-data.html#chip-seq-1"><i class="fa fa-check"></i><b>3.1</b> ChIP-seq</a>
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<li class="chapter" data-level="3.1.1" data-path="download-data.html"><a href="download-data.html#samfile"><i class="fa fa-check"></i><b>3.1.1</b> samFile</a></li>
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<li class="chapter" data-level="4" data-path="ulicutrun-data-analysis.html"><a href="ulicutrun-data-analysis.html"><i class="fa fa-check"></i><b>4</b> uliCUT&RUN data analysis</a>
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<li class="chapter" data-level="4.1" data-path="ulicutrun-data-analysis.html"><a href="ulicutrun-data-analysis.html#qc"><i class="fa fa-check"></i><b>4.1</b> QC</a></li>
<li class="chapter" data-level="4.2" data-path="ulicutrun-data-analysis.html"><a href="ulicutrun-data-analysis.html#fastq-file"><i class="fa fa-check"></i><b>4.2</b> Fastq file</a></li>
<li class="chapter" data-level="4.3" data-path="ulicutrun-data-analysis.html"><a href="ulicutrun-data-analysis.html#mm10"><i class="fa fa-check"></i><b>4.3</b> mm10</a></li>
<li class="chapter" data-level="4.4" data-path="ulicutrun-data-analysis.html"><a href="ulicutrun-data-analysis.html#bowtie2-alignment"><i class="fa fa-check"></i><b>4.4</b> bowtie2 alignment</a></li>
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<div id="intro" class="section level1" number="2">
<h1><span class="header-section-number">Chapter 2</span> Introduction</h1>
<div id="transcriptional-factors" class="section level2" number="2.1">
<h2><span class="header-section-number">2.1</span> Transcriptional factors</h2>
</div>
<div id="chip-seq" class="section level2" number="2.2">
<h2><span class="header-section-number">2.2</span> ChIP-seq</h2>
</div>
<div id="ulicutrun" class="section level2" number="2.3">
<h2><span class="header-section-number">2.3</span> uliCUT&RUN</h2>
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