Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Problem building published database #1

Open
ctparson opened this issue Nov 19, 2021 · 0 comments
Open

Problem building published database #1

ctparson opened this issue Nov 19, 2021 · 0 comments

Comments

@ctparson
Copy link

After install all of the dependencies appear to be functioning as they should, however when I attempt to build the published database I get the error posted below. Any assistance would be greatly appreciated.

Do you want to download the published ANIb database (118M)?: yes
Traceback (most recent call last):
File "btyper-2.3.3/build_btyper_anib_db.py", line 76, in
main()
File "btyper-2.3.3/build_btyper_anib_db.py", line 73, in main
download_genomes(btyper_path, genome_list, "published")
File "btyper-2.3.3/build_btyper_anib_db.py", line 43, in download_genomes
response = urlopen(gpath)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 429, in open
response = self._open(req, data)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 447, in _open
'_open', req)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 407, in _call_chain
result = func(*args)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1413, in ftp_open
fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1435, in connect_ftp
persistent=False)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 879, in init
self.init()
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 888, in init
self.ftp.connect(self.host, self.port, self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/ftplib.py", line 135, in connect
self.sock = socket.create_connection((self.host, self.port), self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/socket.py", line 575, in create_connection
raise err
urllib2.URLError: <urlopen error ftp error: [Errno 110] Connection timed out>

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant