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After install all of the dependencies appear to be functioning as they should, however when I attempt to build the published database I get the error posted below. Any assistance would be greatly appreciated.
Do you want to download the published ANIb database (118M)?: yes
Traceback (most recent call last):
File "btyper-2.3.3/build_btyper_anib_db.py", line 76, in
main()
File "btyper-2.3.3/build_btyper_anib_db.py", line 73, in main
download_genomes(btyper_path, genome_list, "published")
File "btyper-2.3.3/build_btyper_anib_db.py", line 43, in download_genomes
response = urlopen(gpath)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 429, in open
response = self._open(req, data)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 447, in _open
'_open', req)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 407, in _call_chain
result = func(*args)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1413, in ftp_open
fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1435, in connect_ftp
persistent=False)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 879, in init
self.init()
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 888, in init
self.ftp.connect(self.host, self.port, self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/ftplib.py", line 135, in connect
self.sock = socket.create_connection((self.host, self.port), self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/socket.py", line 575, in create_connection
raise err
urllib2.URLError: <urlopen error ftp error: [Errno 110] Connection timed out>
The text was updated successfully, but these errors were encountered:
After install all of the dependencies appear to be functioning as they should, however when I attempt to build the published database I get the error posted below. Any assistance would be greatly appreciated.
Do you want to download the published ANIb database (118M)?: yes
Traceback (most recent call last):
File "btyper-2.3.3/build_btyper_anib_db.py", line 76, in
main()
File "btyper-2.3.3/build_btyper_anib_db.py", line 73, in main
download_genomes(btyper_path, genome_list, "published")
File "btyper-2.3.3/build_btyper_anib_db.py", line 43, in download_genomes
response = urlopen(gpath)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 154, in urlopen
return opener.open(url, data, timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 429, in open
response = self._open(req, data)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 447, in _open
'_open', req)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 407, in _call_chain
result = func(*args)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1413, in ftp_open
fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib2.py", line 1435, in connect_ftp
persistent=False)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 879, in init
self.init()
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/urllib.py", line 888, in init
self.ftp.connect(self.host, self.port, self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/ftplib.py", line 135, in connect
self.sock = socket.create_connection((self.host, self.port), self.timeout)
File "/home/admin/anaconda3/envs/btyper/lib/python2.7/socket.py", line 575, in create_connection
raise err
urllib2.URLError: <urlopen error ftp error: [Errno 110] Connection timed out>
The text was updated successfully, but these errors were encountered: