New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Input seurat integration object #135

Open

mudappathir opened this issue Jun 1, 2021 · 1 comment

mudappathir commented Jun 1, 2021

Hi,

I am running Seurat pipeline similar to this: https://satijalab.org/seurat/archive/v3.0/immune_alignment.html

Can I input the integrated seurat object as input to MAESTRO RNARunSeurat function?

Collaborator

crazyhottommy commented Aug 24, 2021

@mudappathir the input for this function is a matrix https://github.com/liulab-dfci/MAESTRO/blob/master/R/RNARunSeurat.R#L51
we use Seurat under the hood.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment