derfinderData

Data package for derfinder and derfinderPlot examples.

Documentation

For more information about derfinderData check the vignettes through Bioconductor or at the documentation website.

Installation instructions

Get the latest stable R release from CRAN. Then install derfinderData from Bioconductor using the following code:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("derfinderData")

Citation

Below is the citation output from using citation('derfinderData') in R. Please run this yourself to check for any updates on how to cite derfinderData.

print(citation("derfinderData"), bibtex = TRUE)
#> To cite package 'derfinderData' in publications use:
#> 
#>   Collado-Torres L, Jaffe A, Leek J (2021). _derfinderData: Processed
#>   BigWigs from BrainSpan for examples_. R package version 2.19.0,
#>   <https://github.com/leekgroup/derfinderData>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {derfinderData: Processed BigWigs from BrainSpan for examples},
#>     author = {Leonardo Collado-Torres and Andrew Jaffe and Jeffrey Leek},
#>     year = {2021},
#>     note = {R package version 2.19.0},
#>     url = {https://github.com/leekgroup/derfinderData},
#>   }

Please note that the derfinderData was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.

Code of Conduct

Please note that the derfinderData project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Development tools

• Continuous code testing is possible thanks to GitHub actions through usethis, remotes, sysreqs and rcmdcheck customized to use Bioconductor’s docker containers and BiocCheck.
• Code coverage assessment is possible thanks to codecov and covr.
• The documentation website is automatically updated thanks to pkgdown.
• The code is styled automatically thanks to styler.
• The documentation is formatted thanks to devtools and roxygen2.

For more details, check the dev directory.

This package was developed using biocthis.