Dockerfile

# License

# C21035 MAUD Interface Tool Kit (MILK) has been acknowledged by NNSA for open source release.

# © 2022. Triad National Security, LLC. All rights reserved. This program was produced under 
# U.S. Government contract 89233218CNA000001 for Los Alamos National Laboratory (LANL), which 
# is operated by Triad National Security, LLC for the U.S. Department of Energy/National Nuclear 
# Security Administration. All rights in the program are reserved by Triad National Security, LLC, 
# and the U.S. Department of Energy/National Nuclear Security Administration. The Government is 
# granted for itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide 
# license in this material to reproduce, prepare derivative works, distribute copies to the public, 
# perform publicly and display publicly, and to permit others to do so.

FROM --platform=linux/amd64 mambaorg/micromamba:1.4.9

# environment variables
ENV MAUD_PATH=/Maud
ENV CINEMA_PATH=/cinema
ENV HOME=/home/$MAMBA_USER

# assign folder ownership to mamba
COPY --chown=$MAMBA_USER:$MAMBA_USER . $HOME/
WORKDIR $HOME

# Install MILK
RUN micromamba install -v -y -n base -f "${HOME}/environments/environment_linux_docker.yml" && \
    echo "conda activate $CONDA_ENV" >> ~/.bashrc

USER root

RUN apt-get update && apt-get install -y wget && apt-get install -y git

# Install MAUD
RUN mkdir -p ${MAUD_PATH} && \
    cd ${MAUD_PATH} && \
    wget -O Maud.tar.gz https://github.com/luttero/maud/releases/download/v2.9992/Maud.tar.gz && \
    tar -C / -xvzf Maud.tar.gz && \
    chown $MAMBA_USER:$MAMBA_USER ${MAUD_PATH}

# Install Cinema
RUN mkdir -p ${CINEMA_PATH} && \
    git clone https://github.com/cinemascience/cinema_debye_scherrer.git ${CINEMA_PATH} && \
    chown $MAMBA_USER:$MAMBA_USER ${CINEMA_PATH}

RUN echo '[ ! -z "$TERM" -a -r /etc/motd ] && cat /etc/issue && cat /etc/motd' \
    >> /etc/bash.bashrc \
    ; echo "\
    Licensing: \
    C21035 MAUD Interface Tool Kit (MILK) has been acknowledged by NNSA for open source release. \
    © 2022. Triad National Security, LLC. All rights reserved. This program was produced under \
    U.S. Government contract 89233218CNA000001 for Los Alamos National Laboratory (LANL), which \
    is operated by Triad National Security, LLC for the U.S. Department of Energy/National Nuclear \
    Security Administration. All rights in the program are reserved by Triad National Security, LLC, \
    and the U.S. Department of Energy/National Nuclear Security Administration. The Government is \
    granted for itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide \ 
    license in this material to reproduce, prepare derivative works, distribute copies to the public, \
    perform publicly and display publicly, and to permit others to do so."\
    > /etc/motd