Release 0.64.2

What's Changed

• ✅ Bring back transfer tests by @falexwolf in #1357
• 👷 Use ruff and clean up pre-commit by @Zethson in #1358
• 🐛 Fix mypy by @Koncopd in #1359
• 📝 Use .df() instead of .filter().df() by @sunnyosun in #1360
• 🐛 Account for length zero label lists by @falexwolf in #1362
• ✏️ Fix the spacing of describe by @sunnyosun in #1365
• 🚚 Rename view_flow to view_lineage by @falexwolf in #1367

Full Changelog: 0.64.1...0.64.2

Release 0.64.1

What's Changed

• 🐛 Fix hash inference for cloud non-s3 objects and use stored gcs credentials by @Koncopd in #1355
• 🚸 Silence the httpx logger by @falexwolf in #1356

Full Changelog: 0.64.0...0.64.1

Release 0.64.0

What's Changed

• 🏗️ Re-architect API around Artifact instead of File by @falexwolf in #1345
• 🐛 Fix size and hash for local folders in Artifact by @Koncopd in #1350
• 🐛 Only avoid hashing for in-memory zarr by @Koncopd in #1351
• ✅ Record number of objects, test hashes and folder properties by @falexwolf in #1354

Full Changelog: 0.63.5...0.64.0

Release 0.63.4

What's Changed

• 🚑️ Fix capitalization of feature names in describe by @sunnyosun in #1337
• 📝 Updated track guide to include scripts by @sunnyosun in #1338
• 🚸 Added literal checks for type when creating a Feature by @sunnyosun in #1339
• 🚸 Raise proper error when tracking script fails by @sunnyosun in #1340
• 🚸 Parse variables upon track, do not access storage during load by @falexwolf in #1341

Full Changelog: 0.63.3...0.63.4

Release 0.63.3

What's Changed

• 🚚 Move high-level bionty docs here by @falexwolf in #1332
• 📝 Add a track notebooks how-to by @sunnyosun in #1333
• ✨ Do virtual inner join of variables in Dataset.mapped by @Koncopd in #1334

Full Changelog: 0.63.2...0.63.3

Release 0.63.2

What's Changed

• 💚 Fix transfer by @sunnyosun in #1329
• ✨ Fix and extend get_label_weights in Dataset.mapped by @Koncopd in #1330
• ✨ Standardize return field by @sunnyosun in #1331

Full Changelog: 0.63.1...0.63.2

Release 0.63.1

What's Changed

• 🔊 Turn on progress on upload and download by @Koncopd in #1325
• ✨ Add context manager to File.backed and Dataset.mapped by @Koncopd in #1326
• 🚸 Do not rely on naming the primary key id by @falexwolf in #1328

Full Changelog: 0.63.0...0.63.1

0.63.0

What's Changed

• 📝 Add an FAQ on storage keys & locations by @Zethson in #1253
• 🐛 Fix save parents with bionty_source by @sunnyosun in #1315
• 📝 Start with File in quickstart by @sunnyosun in #1317
• ✨ Track Python scripts by @falexwolf in #1318
• 🚚 Recode visibility by @sunnyosun in #1319
• ♻️ Refactor notebook & script tracking by @falexwolf in #1320
• ✨ Added view_tree for keys by @sunnyosun in #1321
• ♻️ Centralize progressbar and convert to percentage by @falexwolf in #1322
• 💚 Fix visibility of flow graphs by @falexwolf in #1323
• 🩹 Fixed visibility of hidden files by @sunnyosun in #1324

Full Changelog: 0.62.0...0.63.0

0.62.0

What's Changed

• ⬆️ Update required versions of anndata, s3fs by @Koncopd in #1295
• 📝 Refactored intro by @sunnyosun in #1296
• 🔥 Remove Modality by @sunnyosun in #1297
• 🚸 Ensure saved notebooks aren't rerun with the same version by @falexwolf in #1298
• 🚸 Prettify view_tree, check for ahead migrations by @falexwolf in #1299
• ♻️ Refactor dataset from directory by @falexwolf in #1300
• 💚 Fix tests by @falexwolf in #1301
• 📝 Added an annotate guide by @sunnyosun in #1302
• 🍱 Updated bionty sources by @sunnyosun in #1305
• ✨ Initial implementation of IndexedDataset by @Koncopd in #1307
• 🚸 Add .df() to Registry by @falexwolf in #1313
• 🐛 Fix bug in transfer files by @falexwolf in #1311
• 🐛 Fix passing organism to featureset.from_values by @sunnyosun in #1312
• ♻️ Rename IndexedDataset to MappedDataset, homogenize by @falexwolf in #1314

Full Changelog: 0.60.3...0.62.0

0.61.0

What's Changed

• ⬆️ Update required versions of anndata, s3fs by @Koncopd in #1295
• 📝 Refactored intro by @sunnyosun in #1296
• 🔥 Remove Modality by @sunnyosun in #1297
• 🚸 Ensure saved notebooks aren't rerun with the same version by @falexwolf in #1298
• 🚸 Prettify view_tree, check for ahead migrations by @falexwolf in #1299
• ♻️ Refactor dataset from directory by @falexwolf in #1300
• 💚 Fix tests by @falexwolf in #1301

Full Changelog: 0.60.3...0.61.0