Release-2.1.3

update dask version and fix axes bug in heatmap

Release-2.1.0

Release post peer-review

Release-2.0.0

version upgrade

Release-1.3.3

edit test for kmeans clustering as defauls have changed

Release-1.0.0

update packages

Release-0.22.0

doc up

Release-0.19.0

• Included support for Apple M1 machines
• Included support for native rendering of Zarr stored images using Napari: pl.image_viewer and pl.gate_finder

Temporary workaround for installing in Apple M1 machines

# reate and load a new environment
conda create --name scimap python=3.8 -y
conda activate scimap

# if you do not have xcode please install it
xcode-select --install

# if you do not have homebrew please install it
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"

# if you do not have cmake install it
brew install cmake

# install h5py
brew install hdf5@1.12
export HDF5_DIR=/opt/homebrew/Cellar/hdf5/1.12.1_1/
pip install --no-binary=h5py h5py

# install llvmlite
conda install llvmlite -y

# install leidenalg
pip install git+https://github.com/vtraag/leidenalg.git

# install scimap
pip install -U scimap

# uninstall 
conda remove llvmlite -y
pip uninstall numba -y
pip uninstall numpy -y

# reinstall this specific version of llvmlite (ignore errors/warning)
pip install -i https://pypi.anaconda.org/numba/label/wheels_experimental_m1/simple llvmlite

# reinstall this specific version of numpy (ignore errors/warning)
pip install numpy==1.22.3

# reinstall this specific version of numba (ignore errors/warning)
pip install -i https://pypi.anaconda.org/numba/label/wheels_experimental_m1/simple numba

Release-0.18.1

update 2

Release-0.17.7

Testing the new GitHub Action that automatically builds, tags and pushed Docker container images. The action is triggered by new releases.

Release-0.17.6

docker edit to force upgrade