.gitlab-ci.yml

image: 
    name: quay.io/singularity/singularity:v3.4.0
    entrypoint: [""]

stages:
  - pull
  - test

# Pull OpenImpala Singularity container
openimpala-image:
  stage: pull
  script: 
     - singularity pull shub://jameslehoux/openimpala-singularity
  artifacts:
    paths:
     - openimpala-singularity_latest.sif
    expire_in: 1 hour

# Test OpenImpala TiffReader class
tiffreader:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tTiffReader

# Test OpenImpala TiffStackReader class
tiffstackreader:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tTiffStackReader

# Test OpenImpala DatReader class
datreader:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tDatReader

# Test OpenImpala HDF5Reader class
HDF5reader:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tHDF5Reader

# Test OpenImpala VolumeFraction class
volumefraction:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tVolumeFraction
     
# Test OpenImpala Tortuosity class
tortuosity:
  stage: test
  script: 
     - singularity exec openimpala-singularity_latest.sif /openImpala/build/tests/tTortuosity