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filds.txt
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filds.txt
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"Sample Name",
"Lane",
"BarcodeIdx",
"Project",
"Harvest By",
"Harvest Date",
"Harvest Time",
"First Strand Amp By",
"First Strand Amp Date",
"Amplified By",
"Amplified Date",
"Library By",
"Library Date",
"Species",
"Strain",
"Strain Other",
"Age Harvested Unit",
"Age Harvested Unit Other",
"Age Harvested Value",
"Age Culture",
"Harvest Method",
"Harvest Quant",
"Harvest Compound",
"Is Harvest Compound Uncaged",
"Region",
"Subregion",
"Subregion Other",
"Cell Class",
"Cell Class Other",
"Cell Type",
"Cell Type Other",
"Supplier",
"Source Type",
"Source Unit",
"Source Unit Other",
"Source Region",
"Source Region Other",
"Patient ID",
"Cell ID",
"Dendrite ID",
"Source Well ID",
"Treatment",
"Replicate",
"Source Amplification Method",
"Source Amplification Rounds",
"First Sequencing Barcode",
"Second Sequencing Barcode",
"Non-Sequencing Barcode",
"Spike-In Type",
"Spike-In Dilution",
"Library Input Amount",
"Library Kit",
"Strand Specific",
"Library Const PCR Cycles",
"Amplification Protocol",
"Library Protocol",
"Analysis Protocol",
"Contaminants File",
"dbGaP Release",
"SRA ID",
"Notes",
"pipeline",
"STAR.star.version",
"STAR.samtools.version",
"STAR.species (genome)",
"STAR.SE",
"STAR.readLength",
"STAR.Tot Reads After Trim",
"STAR.Avg Inp Read Len",
"STAR.Avg Uniq Map Len",
"STAR.Perc Bases Mismatched",
"STAR.Uniq-mapped Reads",
"STAR.Total-mapped Reads",
"STAR.Uniq-mapped Perc",
"STAR.Multi-mapped Perc",
"STAR.Not-mapped Perc",
"VERSE.verse.version",
"VERSE.transcriptome",
"VERSE.stranded",
"VERSE.ID_attribute",
"VERSE.introns",
"VERSE.intergenic",
"VERSE.lines-sines",
"VERSE.exons Level 1,2: non-SpikeIn Reads Counted",
"VERSE.exons Level 1,2: SpikeIn ReadsCounted",
"VERSE.exons Level 1,2: Num Genes",
"VERSE.exons Level 1,2: Avg Read Per Gene",
"VERSE.exons Level 1,2: Max Reads Per Gene",
"VERSE.exons Level 1,2: Ambiguous Mapped",
"VERSE.exons Level 3: Reads Counted",
"VERSE.exons Level 3: Num Genes",
"VERSE.exons Level 3: Avg Read Per Gene",
"VERSE.exons Level 3: Max Reads Per Gene",
"VERSE.exons Level 3: Ambiguous Mapped",
"VERSE.anti-exons: non-spikeIn Reads Counted",
"VERSE.anti-exons: spikeIn Reads Counted",
"VERSE.anti-exons: Reads Counted",
"VERSE.anti-exons: Num Genes",
"VERSE.anti-exons: Avg Read Per Gene",
"VERSE.anti-exons: Max Reads Per Gene",
"VERSE.anti-exons: Ambiguous Mapped",
"VERSE.introns Level 1,2: Reads Counted",
"VERSE.introns Level 1,2: Num Genes",
"VERSE.introns Level 1,2: Avg Read Per Gene",
"VERSE.introns Level 1,2: Max Reads Per Gene",
"VERSE.introns Level 1,2: Ambiguous Mapped",
"VERSE.introns Level 3: Reads Counted",
"VERSE.introns Level 3: Num Genes",
"VERSE.introns Level 3: Avg Read Per Gene",
"VERSE.introns Level 3: Max Reads Per Gene",
"VERSE.introns Level 3: Ambiguous Mapped",
"VERSE.anti-introns: Reads Counted",
"VERSE.anti-introns: Num Genes",
"VERSE.anti-introns: Avg Read Per Gene",
"VERSE.anti-introns: Max Reads Per Gene",
"VERSE.anti-introns: Ambiguous Mapped",
"VERSE.mito: Reads Counted",
"VERSE.mito: Num Genes",
"VERSE.mito: Avg Read Per Gene",
"VERSE.mito: Max Reads Per Gene",
"VERSE.mito: Ambiguous Mapped",
"VERSE.anti-mito: Reads Counted",
"VERSE.anti-mito: Num Genes",
"VERSE.anti-mito: Avg Read Per Gene",
"VERSE.anti-mito: Max Reads Per Gene",
"VERSE.anti-mito: Ambiguous Mapped",
"VERSE.Intergenic: Reads Counted",
"VERSE.Intergenic: Num Regions",
"VERSE.Intergenic: Avg Read Per Region",
"VERSE.Intergenic: Max Reads Per Region",
"VERSE.Intergenic: Ambiguous Mapped",
"VERSE.LINE Reads",
"VERSE.SINE Reads",
"VERSE.Num LINEs",
"VERSE.Num SINEs",
"VERSE.Neither LINEs nor SINEs",
"VERSE.No Feature",
"VERSE.Reads Missing Mates",
"VERSE.Perc: Exons Level 1,2",
"VERSE.Perc: Exons Level 3",
"VERSE.Perc: Anti-Exons",
"VERSE.Perc: Introns Level 1,2",
"VERSE.Perc: Introns Level 3",
"VERSE.Perc: Anti-Introns",
"VERSE.Perc: Mito",
"VERSE.Perc: Anti-Mito",
"VERSE.Perc: Intergenic",
"VERSE.Perc: Spike-In",
"BLAST.blastn.version",
"BLAST.parseBlast.py.version",
"BLAST.species",
"BLAST.readLength",
"BLAST.numReads",
"BLAST.kmer",
"BLAST.Total Hits",
"BLAST.Hits Not Counted",
"BLAST.Perc Hits Not Target or SpikeIn",
"BLAST.Bacteria",
"BLAST.Danio",
"BLAST.Fly",
"BLAST.Human",
"BLAST.Mouse",
"BLAST.Rat",
"BLAST.Yeast",
"BLAST.Carp",
"BLAST.ERCC",
"BLAST.PhiX",
"BLAST.TATAGTGAGT",
"BLAST.Perc Counted",
"TRIM.trimReads.py.version",
"TRIM.minLen",
"TRIM.phredThresh",
"TRIM.removeN",
"TRIM.numAT",
"TRIM.SE",
"TRIM.ContamFile",
"TRIM.nTotalReadsBeforeTrim",
"TRIM.nBothTrimmed",
"TRIM.nFirstTrimmed",
"TRIM.nSecondTrimmed",
"TRIM.nBothDiscarded",
"TRIM.nFirstDiscarded",
"TRIM.nSecondDiscarded",
"TRIM.Phred Threshold (first)",
"TRIM.Phred Threshold (second)",
"TRIM.removed5N (first)",
"TRIM.removed5N (second)",
"TRIM.removed3N (first)",
"TRIM.removed3N (second)",
"TRIM.init3G (first)",
"TRIM.init3G (second)",
"TRIM.indexAdapter (first)",
"TRIM.indexAdapter (second)",
"TRIM.univAdapterRC (first)",
"TRIM.univAdapterRC (second)",
"TRIM.aRNAPrimer (first)",
"TRIM.aRNAPrimer (second)",
"TRIM.aRNAPrimerRC (first)",
"TRIM.aRNAPrimerRC (second)",
"TRIM.tivaXoligo (first)",
"TRIM.tivaXoligo (second)",
"TRIM.tivaXoligoRC (first)",
"TRIM.tivaXoligoRC (second)",
"TRIM.dT5oligo (first)",
"TRIM.dT5oligo (second)",
"TRIM.dT5oligoRC (first)",
"TRIM.dT5oligoRC (second)",
"TRIM.dT6oligo (first)",
"TRIM.dT6oligo (second)",
"TRIM.dT6oligoRC (first)",
"TRIM.dT6oligoRC (second)",
"TRIM.NexteraRead1ExternalAdapter (first)",
"TRIM.NexteraRead1ExternalAdapter (second)",
"TRIM.NexteraRead2ExternalAdapter (first)",
"TRIM.NexteraRead2ExternalAdapter (second)",
"TRIM.ChexPolyCprimerRC (first)",
"TRIM.ChexPolyCprimerRC (second)",
"TRIM.istT7primerRC (first)",
"TRIM.istT7primerRC (second)",
"TRIM.NexteraTransposaseAdapterR1 (first)",
"TRIM.NexteraTransposaseAdapterR1 (second)",
"TRIM.NexteraTransposaseAdapterR1RC (first)",
"TRIM.NexteraTransposaseAdapterR1RC (second)",
"TRIM.NexteraTransposaseAdapterR2 (first)",
"TRIM.NexteraTransposaseAdapterR2 (second)",
"TRIM.NexteraTransposaseAdapterR2RC (first)",
"TRIM.NexteraTransposaseAdapterR2RC (second)",
"TRIM.NexteraTransposonEndSequence (first)",
"TRIM.NexteraTransposonEndSequence (second)",
"TRIM.NexteraTransposonEndSequenceRC (first)",
"TRIM.NexteraTransposonEndSequenceRC (second)",
"TRIM.SmartSeqTSO (first)",
"TRIM.SmartSeqTSO (second)",
"TRIM.SmartSeqTSORC (first)",
"TRIM.SmartSeqTSORC (second)",
"TRIM.SmartSeqOligo (first)",
"TRIM.SmartSeqOligo (second)",
"TRIM.SmartSeqOligoRC (first)",
"TRIM.SmartSeqOligoRC (second)",
"TRIM.5 polyT (first)",
"TRIM.5 polyT (second)",
"TRIM.3 polyA (first)",
"TRIM.3 polyA (second)",
"TRIM.removed5A (first)",
"TRIM.removed5A (second)",
"TRIM.removed3A (first)",
"TRIM.removed3A (second)",
"TRIM.removed5T (first)",
"TRIM.removed5T (second)",
"TRIM.removed3T (first)",
"TRIM.removed3T (second)",
"TRIM.removed5C (first)",
"TRIM.removed5C (second)",
"TRIM.removed3C (first)",
"TRIM.removed3C (second)",
"TRIM.removed5G (first)",
"TRIM.removed5G (second)",
"TRIM.removed3G (first)",
"TRIM.removed3G (second)",
"RMDUP.removeDuplicates.py.version",
"RMDUP.nInitialReadPairs",
"RMDUP.nUniqueReadPairs",
"RMDUP.nDuplicatesFound",
"RMDUP.nReadsWithDuplicates",
"RMDUP.maxDuplicateCount",
"GMAP.gmap.version",
"GMAP.samtools.version",
"GMAP.species (genome)",
"GMAP.SE",
"GMAP.readLength",
"GMAP.Reads After Trim",
"GMAP.Reads Mapped",
"GMAP.Uniq Reads",
"GMAP.Mismatches",
"GMAP.Bases Mapped",
"GMAP.Avg Read Length",
"GMAP.Max Read Length",
"BARCODE.kmerFind.py.version",
"BARCODE.barcode",
"BARCODE.prefix",
"BARCODE.suffix",
"BARCODE.cut",
"BARCODE.SE",
"BARCODE.R1_threshold",
"BARCODE.R2_threshold",
"BARCODE.nTotalReadsBeforeMapping",
"BARCODE.totalBothMapped",
"BARCODE.totalFirstMapped",
"BARCODE.totalSecondMapped",
"BARCODE.firstKmer",
"BARCODE.firstRC",
"BARCODE.secondKmer",
"BARCODE.secondRC",
"BARCODE.avgPosFirst",
"BARCODE.avgPosSecond",
"BARCODE.avgPosFirstForward",
"BARCODE.avgPosFirstReverse",
"BARCODE.avgPosSecondForward",
"BARCODE.avgPosSecondReverse",
"Experiment Name",
"Description",
"Investigators",
"External Lab",
"Submitted Date",
"Machine Manufacturer",
"Model",
"Sequencing Kit",
"Read Length",
"Paired",
"Facility",
"Facility ID",
"Processing",
"Notes",