to-do list 2022-06-10

[jokergoo]

chord diagram

• chordDiagram: Color gradients between groups chordDiagram: Color gradients between groups #313
• In circos.heatmap, support border.color as a vector In circos.heatmap, support border.color as a vector #308
• calc_gap() when it is not a two-group chord diagram calc_gap() when it is not a two-group chord diagram #319
• Visualize multiple group intersections (similar to a multi group Venn diagram) Visualize multiple group intersections (similar to a multi group Venn diagram) #296

Heatmap

• support render circular heatmap as a raster image support render circular heatmap as a raster image #279
• Time consuming Time consuming #278
• in circular.heatmap(), support column clustering, show column names. Note columns are corresponded from most outside to inside.

pos transform

• posTrans should go to basic low-level graphics
• overlap circos.labels() to other tracks
• optimize circos.labels() Strange anti-overlap reaction with circos.labels #357
• shift text for neighbour sectors, e.g. in chord diagram, where there is a cluster of small sectors.

Others

• Sector has radical offset Sector has radical offset #290
• A real circular coordinate A real circular coordinate #295
• add circos.labels add circos.labels #274, labels #255
• add circos.initializeCircularGenome in the book add circos.initializeCircularGenome in the book #273
• Comparison of 3 bacterial genomes Comparison of 3 bacterial genomes  #276
• add a circos.phylo()
• add a circos.horizon()
• add a circos.stackedText(): https://twitter.com/jokergoo_gu/status/1596081092154753024
• add borders around text control of label fill color #341
• moving the whole sector (including all tracks) away from the circle
• Hierarchical edge bundling try to do this #354
• combine two half circos plot (how to add links between them)?
• units?

[DMCDS]

Hi jokergoo,

Was 'chordDiagram: Color gradients between groups' ever added? I saw a checkmark, but I couldn't find it in the package. This feature would be great for showing non-directional relations between groups (e.g., co-localization of cells).

Thanks so much!
David