DESCRIPTION

Package: IReNA
Title: IReNA
Version: 0.99.0
Authors@R: 
    c(person(given = "Junyao",
           family = "Jiang",
           role = c("aut", "cre"),
           email = "jiangjunyao789@163.com"),
           person(given = "Jie",
           family = "Wang",
           role = "ctb",
           email = "wang_jie01@gibh.ac.cn"))
Description: IReNA(Integrated Regulatory Network analysis) is an R package to intergrate scRNA-seq data with scATAC-seq/ATAC-seq data to reconstrcut regulatory network. 
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Suggests: 
    covr,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: 
    R (>= 4.0),
    pheatmap,
    DDRTree,
    RcisTarget,
Imports: 
    Rsamtools,
    GenomicRanges,
    ChIPseeker,
    IRanges,
    Biostrings,
    igraph,
    pbapply,
    RCy3,
    ROCR,
    Seurat (>= 3.0.0),
    ggplot2,
    dplyr,
    gridExtra,
    stats,
    utils,
    monocle,
    VGAM,
    BiocGenerics,
    clusterProfiler,
    edgeR,
    limma,
    rlang,
    reshape2,
    stringr,
    furrr,
    future,
    purrr
biocViews: SingleCell,RNASeq,ATACSeq,Network
VignetteBuilder: knitr
BugReports: https://github.com/jiang-junyao/IReNA/issues