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automate generate .bai file #26

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jharri34 opened this issue Mar 26, 2017 · 2 comments
Open

automate generate .bai file #26

jharri34 opened this issue Mar 26, 2017 · 2 comments

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@jharri34
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@jharri34
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to convert bam to vcf the haplotype caller needs the bai (index) file to use as reference

@smchuks
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smchuks commented Mar 31, 2017

We can build the bam index (bai) using Picard commands

@jharri34 jharri34 changed the title we need to generate .bai files for all of bam files automate generate .bai files for all of bam files Mar 31, 2017
@jharri34 jharri34 changed the title automate generate .bai files for all of bam files automate generate .bai file Mar 31, 2017
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@jharri34 @smchuks