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Switch data backend to Zarr #411

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jeromekelleher opened this issue Nov 21, 2024 · 2 comments
Closed

Switch data backend to Zarr #411

jeromekelleher opened this issue Nov 21, 2024 · 2 comments
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1.0

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@jeromekelleher
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Currently we use the metadata DB and AlignmentStore to represent the dataset, which is very tedious. We can store everything in a 300M Zip file using Zarr. Switch to this.
@jeromekelleher jeromekelleher added this to the 1.0 milestone Nov 21, 2024
@jeromekelleher
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See sgkit-dev/vcf-zarr-publication#175 for prototype and some analysis

@jeromekelleher
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Closed in #409

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