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25 Open 53 Closed
25 Open 53 Closed
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Issues list

Rename repository to "viridian"
#106 opened May 18, 2023 by martinghunt
More informative error messages for assembly failures
#103 opened Oct 19, 2022 by bede
Handling adapter sequences
#101 opened Oct 11, 2022 by martinghunt
9
Primers contributing to Clean.Tot.cons
#100 opened Oct 11, 2022 by martinghunt
7
Deciding when to exclude primers
#99 opened Oct 11, 2022 by martinghunt
15
Version string in refactor_2022
#97 opened Sep 12, 2022 by jeff-k
Singularity build failing
#95 opened Sep 6, 2022 by martinghunt
4
Update JSON with summary block/new info while preserving tags used by GPAS
#94 opened Sep 2, 2022 by iqbal-lab
2
VCF mods
#93 opened Aug 11, 2022 by iqbal-lab
errors in installation.
#91 opened Jul 26, 2022 by hafizmtalha
1
Enumerate what is happening in the extra indel errors in validation set
#88 opened Jul 20, 2022 by iqbal-lab
Delete temp files by default
#85 opened Jul 20, 2022 by iqbal-lab
keep-bam option should make a coord sorted indexed bam not name-sorted
#84 opened Jul 20, 2022 by iqbal-lab
@jeff-k
JSON log - multiple small things
#83 opened Jul 20, 2022 by iqbal-lab
1 of 3 tasks
@jeff-k
Cope gracefully if passed empty fastq
#78 opened Jul 20, 2022 by iqbal-lab
Ampliseq digests primers future release
#74 opened Jun 21, 2022 by iqbal-lab
Artefact in 0.3.9 to evaluate on 0.9: variants in spike 142 in delta likely due to dropouts
#52 opened May 11, 2022 by iqbal-lab
2
Viridian 0.9 checklist
#50 opened Apr 22, 2022 by iqbal-lab
Provide requisite JSON fields for accurate completeness calculation
#48 opened Mar 8, 2022 by bede
Add terminal newline to final assembly fasta
#42 opened Feb 2, 2022 by bede
add linebreaks to final fasta file
#39 opened Jan 17, 2022 by martinghunt
1
Reasons for masked positions in output json
#32 opened Dec 10, 2021 by martinghunt
Check return code of every subprocess command
#19 opened Nov 22, 2021 by martinghunt
3
fail gracefully when viridian correctly fails to assemble
#5 opened Jun 1, 2021 by jeff-k
2
Add one sample pipeline tests
#3 opened Apr 6, 2021 by martinghunt
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