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Add a final report #75

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iqbal-lab opened this issue Jun 17, 2020 · 0 comments

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iqbal-lab commented Jun 17, 2020

Some stats we could add, requested in our WHO/UNITAID call

output a warning if any resistance gene has <99% of the gene at >5x depth
warn if <95% of the genome has >5x depth

Summarise QC, Mykrobe, variant calling.

iqbal-lab added the enhancement label

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